Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,804,884	T→C	H281R (CAC→CGC)	rfaQ ←	RfaQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,804,884	0	T	C	100.0%	771.4 / NA	242	H281R (CAC→CGC)	rfaQ	RfaQ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (143/99); total (143/99)

Only 100 of 245 total aligned reads displayed.

TTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACT  >  NC_000913/3804794‑3804973

ttgCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGa                                                                                         <  1:4426538/93‑1 (MQ=255)

  gCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATc                                                                                       >  1:4595922/1‑93 (MQ=255)

  gCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATc                                                                                       >  1:181489/1‑93 (MQ=255)

    ggTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCg                                                                                     >  2:5362737/1‑93 (MQ=255)

     gTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGt                                                                                    >  1:793239/1‑93 (MQ=255)

       cAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTg                                                                                  >  1:4525565/1‑93 (MQ=255)

       cAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTg                                                                                  >  1:3806271/1‑93 (MQ=255)

        aaGTTCATTCCGGGTCGGCCTTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGc                                                                                 >  2:6162767/1‑93 (MQ=255)

        aaGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGc                                                                                 >  2:3731820/1‑93 (MQ=255)

         aGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCa                                                                                >  1:1099686/1‑93 (MQ=255)

         aGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCa                                                                                >  1:5836539/1‑93 (MQ=255)

          gTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCAc                                                                               >  2:5298976/1‑93 (MQ=255)

           ttCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCAcc                                                                              >  1:418979/1‑93 (MQ=255)

           ttCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCAcc                                                                              >  2:5435691/1‑93 (MQ=255)

            tCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCa                                                                             >  1:5232982/1‑93 (MQ=255)

             cATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCaa                                                                            >  1:4972469/1‑93 (MQ=255)

              aTGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCaaa                                                                           <  2:6007758/93‑1 (MQ=255)

              aTGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCaaa                                                                           >  2:4436075/1‑93 (MQ=255)

               tGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAAt                                                                          >  1:5417582/1‑93 (MQ=255)

               tGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGGCCAGGGACGTCAGAATACGCGATCCGTTGCACCaaaa                                                                          >  1:1124193/1‑92 (MQ=255)

                gCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATa                                                                         <  1:6159493/93‑1 (MQ=255)

                gCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATa                                                                         <  2:1113104/93‑1 (MQ=255)

                 ccGGGTCGGCATTTTCTGATAATCCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAg                                                                        <  2:4952956/93‑1 (MQ=255)

                     gTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTa                                                                    >  1:5033489/1‑93 (MQ=255)

                     gTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTa                                                                    >  1:3967495/1‑93 (MQ=255)

                      tCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTaa                                                                   >  1:2032861/1‑93 (MQ=255)

                       cGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAAt                                                                  <  1:6026794/93‑1 (MQ=255)

                        ggCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATg                                                                 <  2:5932430/93‑1 (MQ=255)

                        ggCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATg                                                                 <  1:1535875/93‑1 (MQ=255)

                          cATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGAc                                                               >  1:2825738/1‑93 (MQ=255)

                          cATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGAc                                                               <  2:419487/93‑1 (MQ=255)

                             tttCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTgg                                                            <  2:5234410/93‑1 (MQ=255)

                              ttCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGc                                                           >  2:2124804/1‑93 (MQ=255)

                               tCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCg                                                          >  2:2792068/1‑93 (MQ=255)

                               tCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCg                                                          <  1:2547389/93‑1 (MQ=255)

                               tCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCg                                                          >  2:5137021/1‑93 (MQ=255)

                                cTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGt                                                         >  2:3353134/1‑93 (MQ=255)

                                cTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGt                                                         >  1:1852228/1‑93 (MQ=255)

                                  gATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGttt                                                       <  1:1687030/93‑1 (MQ=255)

                                    tAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTc                                                     >  2:5674348/1‑93 (MQ=255)

                                     aaTTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCa                                                    >  1:13647/1‑93 (MQ=255)

                                      aTTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACTCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCAc                                                   <  1:1946054/93‑1 (MQ=255)

                                      aTTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCAc                                                   <  2:1934093/93‑1 (MQ=255)

                                      aTTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCAc                                                   <  1:4538305/93‑1 (MQ=255)

                                         ccccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGc                                                <  1:2984994/93‑1 (MQ=255)

                                         ccccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGc                                                >  2:1359161/1‑93 (MQ=255)

                                         ccccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGc                                                <  1:4883603/93‑1 (MQ=255)

                                          cccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGcc                                               >  1:4718680/1‑93 (MQ=255)

                                          cccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGcc                                               <  2:2339337/93‑1 (MQ=255)

                                           ccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCg                                              >  1:5448792/1‑93 (MQ=255)

                                             gCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCt                                            <  1:3734668/93‑1 (MQ=255)

                                             gCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCt                                            <  1:5241790/93‑1 (MQ=255)

                                               ccAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGc                                          >  2:3943927/1‑93 (MQ=255)

                                                cAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCa                                         >  1:2388595/1‑93 (MQ=255)

                                                   aaTTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAata                                      <  2:4247148/93‑1 (MQ=255)

                                                   aaTTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAata                                      <  1:3167489/93‑1 (MQ=255)

                                                   aaTTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAata                                      >  2:30799/1‑93 (MQ=255)

                                                     ttGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATg                                    <  1:5115942/93‑1 (MQ=255)

                                                      tGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGt                                   <  2:3880825/93‑1 (MQ=255)

                                                      tGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGt                                   >  2:5805164/1‑93 (MQ=255)

                                                       gAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTc                                  >  2:2811673/1‑93 (MQ=255)

                                                       gAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTc                                  >  2:1239573/1‑93 (MQ=255)

                                                       gAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTc                                  >  2:1458911/1‑93 (MQ=255)

                                                        aataatATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTcc                                 <  1:2135417/93‑1 (MQ=255)

                                                        aataatATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTcc                                 <  1:4937961/93‑1 (MQ=255)

                                                         ataataTTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTccc                                <  2:4620842/93‑1 (MQ=255)

                                                         ataataTTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTccc                                >  1:3290764/1‑93 (MQ=255)

                                                          taataTTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCg                               >  2:5529948/1‑93 (MQ=255)

                                                           aataTTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCgg                              >  1:2348616/1‑93 (MQ=255)

                                                            atatTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGgc                             <  2:4420390/93‑1 (MQ=255)

                                                                tctcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAg                         <  2:1667993/93‑1 (MQ=255)

                                                                 ctcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGa                        >  2:35212/1‑93 (MQ=255)

                                                                 ctcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGa                        >  1:6205110/1‑93 (MQ=255)

                                                                 ctcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGa                        >  2:3210763/1‑93 (MQ=255)

                                                                  tcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGaa                       <  2:2717336/93‑1 (MQ=255)

                                                                  tcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGaa                       >  2:1050040/1‑93 (MQ=255)

                                                                     gTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATcc                    <  2:737432/93‑1 (MQ=255)

                                                                     gTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATcc                    >  1:1017597/1‑93 (MQ=255)

                                                                       ccAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCcac                  >  1:6100836/1‑93 (MQ=255)

                                                                        cAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCcaca                 >  1:2739420/1‑93 (MQ=255)

                                                                        cAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCcaca                 >  1:3414332/1‑93 (MQ=255)

                                                                        cAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCcaca                 <  2:248622/93‑1 (MQ=255)

                                                                        cAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCcaca                 >  1:380689/1‑93 (MQ=255)

                                                                         aGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCacac                <  2:3487598/93‑1 (MQ=255)

                                                                          gggACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACAcc               >  1:715467/1‑93 (MQ=255)

                                                                          gggACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACAcc               >  1:5729331/1‑93 (MQ=255)

                                                                            gACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCaa             >  2:1995649/1‑93 (MQ=255)

                                                                            gACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCaa             <  1:1393637/93‑1 (MQ=255)

                                                                             aCGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAAt            <  1:3059849/93‑1 (MQ=255)

                                                                              cGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATa           <  1:904169/93‑1 (MQ=255)

                                                                               gCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaa          <  1:446436/93‑1 (MQ=255)

                                                                                ccAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaa         >  2:47254/1‑93 (MQ=255)

                                                                                 cAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaa        >  1:362606/1‑93 (MQ=255)

                                                                                 cAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaa        >  2:3813558/1‑93 (MQ=255)

                                                                                 cAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaa        >  2:2943060/1‑93 (MQ=255)

                                                                                  aGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaaa       <  2:435312/93‑1 (MQ=255)

                                                                                  aGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaaa       <  2:2034015/93‑1 (MQ=255)

                                                                                  aGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaaa       <  2:30274/93‑1 (MQ=255)

                                                                                   gAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAg      >  1:2639410/1‑93 (MQ=255)

                                                                                       aCGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACt  <  1:3992164/93‑1 (MQ=255)

TTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACT  >  NC_000913/3804794‑3804973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGTTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACTGCAT  >  NC_000913/3804791‑3804977

TTGTTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGC                                                                                               <  SRR4302533.4344374/94‑1 (MQ=60)

 TGTTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCG                                                                                              >  SRR4302533.3831848/1‑94 (MQ=60)

 TGTTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCG                                                                                              >  SRR4302533.3301442/1‑94 (MQ=60)

  GTTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGA                                                                                             <  SRR4302533.6196059/94‑1 (MQ=60)

   TTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGAT                                                                                            <  SRR4302533.4453293/94‑1 (MQ=60)

    TGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATC                                                                                           >  SRR4302533.182619/1‑94 (MQ=60)

    TGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATC                                                                                           >  SRR4302533.4623763/1‑94 (MQ=60)

      CGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCG                                                                                         >  SRR4302533.5388420/1‑94 (MQ=60)

      CGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCG                                                                                         >  SRR4302533.5931596/1‑94 (MQ=60)

       GGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGT                                                                                        >  SRR4302533.797907/1‑94 (MQ=60)

        GTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTT                                                                                       <  SRR4302533.4020620/94‑1 (MQ=60)

         TCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTG                                                                                      >  SRR4302533.4552964/1‑94 (MQ=60)

         TCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTG                                                                                      >  SRR4302533.3829560/1‑94 (MQ=60)

           AAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCA                                                                                    >  SRR4302533.5871830/1‑94 (MQ=60)

           AAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCA                                                                                    >  SRR4302533.1106204/1‑94 (MQ=60)

            AGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCAC                                                                                   <  SRR4302533.5060268/94‑1 (MQ=60)

            AGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCAC                                                                                   >  SRR4302533.3134718/1‑94 (MQ=60)

            AGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCAC                                                                                   >  SRR4302533.831458/1‑94 (MQ=60)

            AGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCAC                                                                                   <  SRR4302533.5802575/94‑1 (MQ=60)

             GTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACC                                                                                  >  SRR4302533.3829635/1‑94 (MQ=60)

             GTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACC                                                                                  >  SRR4302533.421488/1‑94 (MQ=60)

              TTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCA                                                                                 >  SRR4302533.5264454/1‑94 (MQ=60)

               TCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAA                                                                                >  SRR4302533.5002617/1‑94 (MQ=60)

                CATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAA                                                                               <  SRR4302533.2927764/94‑1 (MQ=60)

                 ATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAAT                                                                              >  SRR4302533.5450172/1‑94 (MQ=60)

                 ATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGGCCAGGGACGTCAGAATACGCGATCCGTTGCACCAAAA                                                                              >  SRR4302533.1130864/1‑94 (MQ=60)

                  TGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATA                                                                             <  SRR4302533.3743023/94‑1 (MQ=60)

                   GCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAG                                                                            <  SRR4302533.6196537/94‑1 (MQ=60)

                    CCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGA                                                                           >  SRR4302533.5494800/1‑94 (MQ=60)

                     CGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGAC                                                                          <  SRR4302533.1770348/94‑1 (MQ=60)

                       GGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTA                                                                        <  SRR4302533.390146/94‑1 (MQ=60)

                       GGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTA                                                                        >  SRR4302533.3991665/1‑94 (MQ=60)

                       GGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTA                                                                        >  SRR4302533.5063979/1‑94 (MQ=60)

                        GTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAA                                                                       >  SRR4302533.2045405/1‑94 (MQ=60)

                        GTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAA                                                                       >  SRR4302533.5453034/1‑94 (MQ=60)

                         TCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAAT                                                                      >  SRR4302533.1389288/1‑94 (MQ=60)

                          CGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATG                                                                     <  SRR4302533.6063315/94‑1 (MQ=60)

                           GGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGA                                                                    >  SRR4302533.5971847/1‑94 (MQ=60)

                           GGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGA                                                                    <  SRR4302533.1545105/94‑1 (MQ=60)

                           GGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGA                                                                    >  SRR4302533.2208416/1‑94 (MQ=60)

                           GGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGA                                                                    >  SRR4302533.1121330/1‑94 (MQ=60)

                           GGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGA                                                                    <  SRR4302533.1863707/94‑1 (MQ=60)

                            GCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGAC                                                                   >  SRR4302533.2843126/1‑94 (MQ=60)

                              ATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTG                                                                 >  SRR4302533.2013753/1‑94 (MQ=60)

                                  TCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGT                                                             <  SRR4302533.2563067/94‑1 (MQ=60)

                                  TCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGT                                                             >  SRR4302533.1863523/1‑94 (MQ=60)

                                    TGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTT                                                           >  SRR4302533.455630/1‑94 (MQ=60)

                                     GATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTT                                                          <  SRR4302533.4944117/94‑1 (MQ=60)

                                     GATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTT                                                          <  SRR4302533.1697252/94‑1 (MQ=60)

                                       TAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCA                                                        >  SRR4302533.13749/1‑94 (MQ=60)

                                       TAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCA                                                        >  SRR4302533.4536389/1‑94 (MQ=60)

                                        AATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCAC                                                       >  SRR4302533.3880323/1‑94 (MQ=60)

                                         ATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACTCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACT                                                      <  SRR4302533.1957920/94‑1 (MQ=60)

                                         ATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACT                                                      <  SRR4302533.4565782/94‑1 (MQ=60)

                                          TTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTG                                                     >  SRR4302533.2326413/1‑94 (MQ=60)

                                            CCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGGATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCC                                                   >  SRR4302533.4464349/1‑94 (MQ=60)

                                            CCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCC                                                   <  SRR4302533.4913192/94‑1 (MQ=60)

                                            CCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCC                                                   >  SRR4302533.4747294/1‑94 (MQ=60)

                                            CCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCC                                                   >  SRR4302533.6147419/1‑94 (MQ=60)

                                            CCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCC                                                   <  SRR4302533.3003255/94‑1 (MQ=60)

                                             CCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCG                                                  >  SRR4302533.452831/1‑94 (MQ=60)

                                             CCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCG                                                  >  SRR4302533.5481616/1‑94 (MQ=60)

                                             CCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCG                                                  <  SRR4302533.517488/94‑1 (MQ=60)

                                             CCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCG                                                  >  SRR4302533.6121657/1‑94 (MQ=60)

                                             CCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCG                                                  >  SRR4302533.5002082/1‑94 (MQ=60)

                                                GCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTG                                               <  SRR4302533.3757580/94‑1 (MQ=60)

                                                GCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTG                                               <  SRR4302533.5273298/94‑1 (MQ=60)

                                                 CCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGC                                              >  SRR4302533.1461326/1‑94 (MQ=60)

                                                 CCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGC                                              <  SRR4302533.2888357/94‑1 (MQ=60)

                                                  CCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCA                                             >  SRR4302533.2403350/1‑94 (MQ=60)

                                                  CCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCA                                             <  SRR4302533.5002382/94‑1 (MQ=60)

                                                  CCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCA                                             >  SRR4302533.5287171/1‑94 (MQ=60)

                                                   CAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAA                                            <  SRR4302533.1142423/94‑1 (MQ=60)

                                                    AGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAAT                                           >  SRR4302533.3511750/1‑94 (MQ=60)

                                                      AATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATAT                                         <  SRR4302533.3186981/94‑1 (MQ=60)

                                                      AATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATAT                                         <  SRR4302533.3005194/94‑1 (MQ=60)

                                                      AATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATAT                                         >  SRR4302533.918481/1‑94 (MQ=60)

                                                      AATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATAT                                         <  SRR4302533.4352987/94‑1 (MQ=60)

                                                      AATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATAT                                         >  SRR4302533.16287/1‑94 (MQ=60)

                                                       ATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATG                                        >  SRR4302533.5081081/1‑94 (MQ=60)

                                                       ATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATG                                        >  SRR4302533.5105562/1‑94 (MQ=60)

                                                        TTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGT                                       <  SRR4302533.5146860/94‑1 (MQ=60)

                                                        TTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGT                                       >  SRR4302533.1205768/1‑94 (MQ=60)

                                                         TGAATAATATTCTCGGTCGAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTC                                      <  SRR4302533.2691805/94‑1 (MQ=60)

                                                         TGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTC                                      >  SRR4302533.1935009/1‑94 (MQ=60)

                                                         TGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTC                                      >  SRR4302533.6285819/1‑94 (MQ=60)

                                                         TGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTC                                      >  SRR4302533.2523469/1‑94 (MQ=60)

                                                          GAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTGC                                     >  SRR4302533.4605588/1‑94 (MQ=60)

                                                          GAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCC                                     >  SRR4302533.946241/1‑94 (MQ=60)

                                                          GAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTAC                                     >  SRR4302533.2781136/1‑94 (MQ=60)

                                                           AATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCC                                    <  SRR4302533.2148583/94‑1 (MQ=60)

                                                           AATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCC                                    >  SRR4302533.3311079/1‑94 (MQ=60)

                                                           AATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCC                                    <  SRR4302533.4967856/94‑1 (MQ=60)

                                                           AATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTACC                                    >  SRR4302533.4723225/1‑94 (MQ=60)

                                                           AATAATATTCTAGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCC                                    <  SRR4302533.478091/94‑1 (MQ=60)

                                                            ATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCG                                   <  SRR4302533.1855834/94‑1 (MQ=60)

                                                            ATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCG                                   <  SRR4302533.3352767/94‑1 (MQ=60)

                                                             TAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGG                                  >  SRR4302533.2363148/1‑94 (MQ=60)

                                                             TAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGG                                  >  SRR4302533.3775549/1‑94 (MQ=60)

                                                               ATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCG                                >  SRR4302533.3496508/1‑94 (MQ=60)

                                                               ATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCG                                >  SRR4302533.2392213/1‑94 (MQ=60)

                                                                 ATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCA                              >  SRR4302533.6170812/1‑94 (MQ=60)

                                                                   TCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGA                            >  SRR4302533.6242322/1‑94 (MQ=60)

                                                                   TCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGA                            <  SRR4302533.773624/94‑1 (MQ=60)

                                                                   TCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGA                            >  SRR4302533.382082/1‑94 (MQ=60)

                                                                    CTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAA                           >  SRR4302533.5271360/1‑94 (MQ=60)

                                                                    CTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAA                           >  SRR4302533.4201349/1‑94 (MQ=60)

                                                                    CTCGGTACAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAA                           <  SRR4302533.5689420/94‑1 (MQ=60)

                                                                     TCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAAT                          <  SRR4302533.4602762/94‑1 (MQ=60)

                                                                       GGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCC                        <  SRR4302533.1427018/94‑1 (MQ=60)

                                                                       GGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCC                        >  SRR4302533.1023580/1‑94 (MQ=60)

                                                                         TCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCAC                      >  SRR4302533.6137675/1‑94 (MQ=60)

                                                                          CCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACA                     <  SRR4302533.1034867/94‑1 (MQ=60)

                                                                          CCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACA                     >  SRR4302533.382982/1‑94 (MQ=60)

                                                                          CCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACA                     >  SRR4302533.3435426/1‑94 (MQ=60)

                                                                          CCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACA                     >  SRR4302533.2756217/1‑94 (MQ=60)

                                                                           CAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGCATCCACAC                    >  SRR4302533.2411118/1‑94 (MQ=60)

                                                                            AGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACC                   >  SRR4302533.5763928/1‑94 (MQ=60)

                                                                            AGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACC                   >  SRR4302533.2586809/1‑94 (MQ=60)

                                                                            AGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACC                   >  SRR4302533.719688/1‑94 (MQ=60)

                                                                            AGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACC                   >  SRR4302533.1752983/1‑94 (MQ=60)

                                                                              GGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAA                 <  SRR4302533.2113913/94‑1 (MQ=60)

                                                                               GACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAAT                <  SRR4302533.4888465/94‑1 (MQ=60)

                                                                               GACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAAT                <  SRR4302533.1402033/94‑1 (MQ=60)

                                                                                ACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATA               <  SRR4302533.762827/94‑1 (MQ=60)

                                                                                ACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATA               <  SRR4302533.3078627/94‑1 (MQ=60)

                                                                                 CGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAA              <  SRR4302533.909471/94‑1 (MQ=60)

                                                                                 CGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAA              >  SRR4302533.6237363/1‑94 (MQ=60)

                                                                                  GCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAA             <  SRR4302533.449109/94‑1 (MQ=60)

                                                                                   CCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAA            >  SRR4302533.3083337/1‑94 (MQ=60)

                                                                                   CCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAA            >  SRR4302533.364812/1‑94 (MQ=60)

                                                                                     AGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAG          >  SRR4302533.2655633/1‑94 (MQ=60)

                                                                                      GAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGC         <  SRR4302533.3999995/94‑1 (MQ=60)

                                                                                       AATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCA        <  SRR4302533.323241/94‑1 (MQ=60)

                                                                                        ATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCAC       >  SRR4302533.267272/1‑94 (MQ=60)

                                                                                          ACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACTG     >  SRR4302533.6249800/1‑94 (MQ=60)

                                                                                          ACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACTG     <  SRR4302533.4016474/94‑1 (MQ=60)

                                                                                           CGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACTGC    <  SRR4302533.967201/94‑1 (MQ=60)

                                                                                           CGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACTGC    >  SRR4302533.2754459/1‑94 (MQ=60)

                                                                                           CGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACTGC    >  SRR4302533.3483801/1‑94 (MQ=60)

                                                                                             CGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACTGCAT  <  SRR4302533.3213437/94‑1 (MQ=60)

TTGTTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACTGCAT  >  NC_000913/3804791‑3804977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`