Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,810,674	T→C	L106P (CTG→CCG)	b3639 →	Dfp

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,810,674	0	T	C	99.5%	668.9 / NA	213	L106P (CTG→CCG)	b3639	Dfp
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (116/95); minor base G (1/0); total (118/95)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 224 total aligned reads displayed.

TTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAG  >  NC_000913/3810584‑3810762

  gAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTa                                                                                      >  1:5486216/1‑93 (MQ=255)

   aGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTAt                                                                                     >  2:612606/1‑93 (MQ=255)

    gCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATc                                                                                    <  1:2730405/93‑1 (MQ=255)

    gCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATc                                                                                    <  1:4532731/93‑1 (MQ=255)

    gCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATc                                                                                    >  1:4123903/1‑93 (MQ=255)

         gTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATcgacga                                                                               <  1:3513022/93‑1 (MQ=255)

          tAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAt                                                                              <  1:1082203/93‑1 (MQ=255)

          tAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAt                                                                              >  2:2557504/1‑93 (MQ=255)

          tAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAt                                                                              >  1:2509984/1‑93 (MQ=255)

           aaaTGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAtt                                                                             >  1:5325204/1‑93 (MQ=255)

           aaaTGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAtt                                                                             <  2:3169361/93‑1 (MQ=255)

            aaTGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAttt                                                                            <  2:4338736/93‑1 (MQ=255)

            aaTGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAttt                                                                            >  2:5198418/1‑93 (MQ=255)

            aaTGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAttt                                                                            >  1:559240/1‑93 (MQ=255)

             aTGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTg                                                                           >  1:22738/1‑93 (MQ=255)

              tGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGt                                                                          <  2:2879293/93‑1 (MQ=255)

              tGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGt                                                                          >  2:257994/1‑93 (MQ=255)

               gggCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTc                                                                         >  1:3176615/1‑93 (MQ=255)

                ggCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCt                                                                        <  1:5585007/93‑1 (MQ=255)

                 gCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCGGGTATCGACGATTTGTCTg                                                                       >  2:3937496/1‑93 (MQ=255)

                  cTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTgg                                                                      <  2:5399828/93‑1 (MQ=255)

                  cTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTgg                                                                      <  1:3299154/93‑1 (MQ=255)

                   tGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGc                                                                     <  1:5440870/93‑1 (MQ=255)

                   tGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGc                                                                     <  1:5496685/93‑1 (MQ=255)

                    gATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCt                                                                    >  2:4377905/1‑93 (MQ=255)

                    gATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCt                                                                    <  2:1521459/93‑1 (MQ=255)

                    gATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCt                                                                    <  1:4845452/93‑1 (MQ=255)

                     aTTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTa                                                                   >  2:1713688/1‑93 (MQ=255)

                     aTTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTa                                                                   <  2:3372492/93‑1 (MQ=255)

                      tttAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTac                                                                  >  2:88088/1‑93 (MQ=255)

                      tttAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTac                                                                  >  2:965384/1‑93 (MQ=255)

                      tttAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTac                                                                  >  2:4875353/1‑93 (MQ=255)

                      tttAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTac                                                                  <  1:2512433/93‑1 (MQ=255)

                      ttaaGTGATGCTCGCCGCGGCCACGGCAGATTTGATTGCCCGTGGTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTac                                                                  <  1:1252393/90‑1 (MQ=255)

                       ttAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTaca                                                                 <  1:221663/93‑1 (MQ=255)

                       ttAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTaca                                                                 <  2:3884270/93‑1 (MQ=255)

                          gTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCt                                                              >  2:5260401/1‑93 (MQ=255)

                            gATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTgc                                                            >  2:5617136/1‑93 (MQ=255)

                            gATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTgc                                                            <  2:4091412/93‑1 (MQ=255)

                             aTTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTgcg                                                           <  1:4274669/93‑1 (MQ=255)

                              ttCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTgcgc                                                          >  1:3008493/1‑93 (MQ=255)

                                 tcGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTg                                                       >  1:2992771/1‑93 (MQ=255)

                                   gCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTa                                                     >  1:801456/1‑93 (MQ=255)

                                   gCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTa                                                     >  2:4661899/1‑93 (MQ=255)

                                   gCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTa                                                     >  1:786845/1‑93 (MQ=255)

                                   gCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTa                                                     <  2:3240224/93‑1 (MQ=255)

                                    ccccTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAg                                                    >  1:3390291/1‑93 (MQ=255)

                                     cccTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGc                                                   <  1:1187651/93‑1 (MQ=255)

                                     cccTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGc                                                   <  2:2096809/93‑1 (MQ=255)

                                     cccTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGc                                                   <  2:4575828/93‑1 (MQ=255)

                                      ccTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGcc                                                  <  1:4641225/93‑1 (MQ=255)

                                      ccTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGcc                                                  >  2:4009818/1‑93 (MQ=255)

                                      ccTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGcc                                                  >  2:5838394/1‑93 (MQ=255)

                                      ccTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGcc                                                  >  1:3351264/1‑93 (MQ=255)

                                         gCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTg                                               >  2:2213371/1‑93 (MQ=255)

                                          ccACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGc                                              <  2:1157933/93‑1 (MQ=255)

                                            aCGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTc                                            >  2:1434341/1‑93 (MQ=255)

                                              ggCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTccc                                          <  1:912479/93‑1 (MQ=255)

                                              ggCAGATTTGATTGCCCGTGTGGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTccc                                          <  1:1000737/93‑1 (MQ=255)

                                               gCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTcccc                                         <  2:1577155/93‑1 (MQ=255)

                                               gCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTcccc                                         >  1:5696530/1‑93 (MQ=255)

                                               gCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTcccc                                         >  2:2328165/1‑93 (MQ=255)

                                                cAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCg                                        >  2:197165/1‑93 (MQ=255)

                                                  gATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGcc                                      <  2:3031432/93‑1 (MQ=255)

                                                   aTTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCa                                     >  2:1497425/1‑93 (MQ=255)

                                                    tttGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCAt                                    <  1:2944410/93‑1 (MQ=255)

                                                     ttGATTGCCCGTATTGTTGCCGGAATGGCGATTGCCCCGTTCTCGAAGATTTGTCTGGCTACACCTGCGCCTGAAGCCGTGCTCCCCGCCATg                                   <  2:3615443/93‑1 (MQ=255)

                                                       gATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGaa                                 <  2:469745/93‑1 (MQ=255)

                                                         ttGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAAcc                               <  2:669092/93‑1 (MQ=255)

                                                          tGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACca                              <  2:3680731/93‑1 (MQ=255)

                                                            cccGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACcagc                            >  2:3510370/1‑93 (MQ=255)

                                                              cGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACcagcag                          >  1:1230381/1‑93 (MQ=255)

                                                               gtgtTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGa                         >  1:1581193/1‑93 (MQ=255)

                                                               gtgtGGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGa                         <  1:521107/93‑1 (MQ=255)

                                                                tgtTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGAt                        >  1:6254464/1‑93 (MQ=255)

                                                                    gctgcCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTAc                    <  2:5108756/93‑1 (MQ=255)

                                                                    gctgcCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTAc                    <  1:2374694/93‑1 (MQ=255)

                                                                      tgcCGGAATGGCGAATGACCGGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTAcct                  <  2:4185034/93‑2 (MQ=255)

                                                                      tgcCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCg                  <  1:6170360/93‑1 (MQ=255)

                                                                      tgcCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCg                  >  1:5969514/1‑93 (MQ=255)

                                                                       gcCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGt                 <  2:611829/93‑1 (MQ=255)

                                                                       gcCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGt                 <  1:1521637/93‑1 (MQ=255)

                                                                       gcCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGt                 >  1:243925/1‑93 (MQ=255)

                                                                        ccGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTg                >  1:5004275/1‑93 (MQ=255)

                                                                        ccGCAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTg                <  2:2232525/93‑1 (MQ=255)

                                                                         cGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGc               <  1:4231741/93‑1 (MQ=255)

                                                                         cGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGc               >  1:498254/1‑93 (MQ=255)

                                                                          ggAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGcc              >  2:6036999/1‑93 (MQ=255)

                                                                            aaTGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGc            <  1:4458154/93‑1 (MQ=255)

                                                                               ggCGAATGACCCGGTATCGCCGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGc         <  1:168574/93‑1 (MQ=255)

                                                                               ggCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGc         >  1:1786924/1‑93 (MQ=255)

                                                                               ggCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGc         <  1:3891610/93‑1 (MQ=255)

                                                                                 ctaaTGACCCTGTATCGACGATTTGCCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCa       <  1:4765276/91‑1 (MQ=255)

                                                                                 cGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCa       <  2:4591589/93‑1 (MQ=255)

                                                                                  gAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGAAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAc      >  1:720875/1‑93 (MQ=255)

                                                                                    aTGACCCGGTATCGACGATTTGTCTGGCTCCACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc    <  1:5831194/93‑1 (MQ=255)

                                                                                    aTGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc    <  1:257994/93‑1 (MQ=255)

                                                                                    aTGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc    >  2:837679/1‑93 (MQ=255)

                                                                                     ggACCCGGTATCGACGATTTGTCTGCCTACACCTGCGCCTGTAGCCGTCCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgca   <  1:3670829/92‑1 (MQ=255)

                                                                                      gACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgcag  >  1:5540279/1‑93 (MQ=255)

TTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAG  >  NC_000913/3810584‑3810762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAA  >  NC_000913/3810581‑3810767

ATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCC                                                                                               <  SRR4302533.5701019/94‑1 (MQ=60)

ATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCC                                                                                               <  SRR4302533.1952206/94‑1 (MQ=60)

ATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCC                                                                                               >  SRR4302533.472552/1‑94 (MQ=60)

ATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCC                                                                                               <  SRR4302533.1245062/94‑1 (MQ=60)

ATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCC                                                                                               >  SRR4302533.839320/1‑94 (MQ=60)

 TATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCG                                                                                              <  SRR4302533.1251104/94‑1 (MQ=60)

 TATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCG                                                                                              >  SRR4302533.1934810/1‑94 (MQ=60)

  ATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGG                                                                                             <  SRR4302533.5352077/94‑1 (MQ=60)

  ATTGAGCCGGGTAAATTGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGG                                                                                             <  SRR4302533.1486768/94‑1 (MQ=60)

    TGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTA                                                                                           >  SRR4302533.5519284/1‑94 (MQ=60)

    TGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTA                                                                                           >  SRR4302533.4370866/1‑94 (MQ=60)

    TGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTA                                                                                           <  SRR4302533.2421991/94‑1 (MQ=60)

      AGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATC                                                                                         >  SRR4302533.4148939/1‑94 (MQ=60)

       GCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCG                                                                                        <  SRR4302533.4560176/94‑1 (MQ=60)

       GCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCG                                                                                        <  SRR4302533.2747152/94‑1 (MQ=60)

         TGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGAC                                                                                      <  SRR4302533.5542265/94‑1 (MQ=60)

          GGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACG                                                                                     <  SRR4302533.575619/94‑1 (MQ=60)

           GGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGA                                                                                    <  SRR4302533.6218183/94‑1 (MQ=60)

            GTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAT                                                                                   <  SRR4302533.3534677/94‑1 (MQ=60)

            GTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAT                                                                                   >  SRR4302533.2525450/1‑94 (MQ=60)

            GTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAT                                                                                   >  SRR4302533.2525451/1‑94 (MQ=60)

            GTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGAT                                                                                   >  SRR4302533.2937162/1‑94 (MQ=60)

             TAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATT                                                                                  >  SRR4302533.5357117/1‑94 (MQ=60)

             TAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATT                                                                                  <  SRR4302533.1088587/94‑1 (MQ=60)

             TAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATT                                                                                  >  SRR4302533.5316197/1‑94 (MQ=60)

              AAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTT                                                                                 >  SRR4302533.562562/1‑94 (MQ=60)

               AATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTG                                                                                >  SRR4302533.22889/1‑94 (MQ=60)

                ATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGT                                                                               <  SRR4302533.552038/94‑1 (MQ=60)

                ATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGT                                                                               <  SRR4302533.843605/94‑1 (MQ=60)

                 TGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTC                                                                              >  SRR4302533.3196154/1‑94 (MQ=60)

                   GGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTG                                                                            <  SRR4302533.5618753/94‑1 (MQ=60)

                   GGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTG                                                                            >  SRR4302533.5517547/1‑94 (MQ=60)

                   GGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTG                                                                            <  SRR4302533.2470828/94‑1 (MQ=60)

                     CTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGC                                                                          <  SRR4302533.3319513/94‑1 (MQ=60)

                     CTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGC                                                                          >  SRR4302533.4166831/1‑94 (MQ=60)

                      TGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCT                                                                         <  SRR4302533.5473637/94‑1 (MQ=60)

                      TGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCT                                                                         <  SRR4302533.5529838/94‑1 (MQ=60)

                       GATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTA                                                                        <  SRR4302533.4874820/94‑1 (MQ=60)

                       GATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTA                                                                        >  SRR4302533.535674/1‑94 (MQ=60)

                        ATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTAC                                                                       >  SRR4302533.6296248/1‑94 (MQ=60)

                         TTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACA                                                                      >  SRR4302533.117174/1‑94 (MQ=60)

                         TTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACA                                                                      <  SRR4302533.2527911/94‑1 (MQ=60)

                         TTAAGTGATGCTCGCCGCGGCCACGGCAGATTTGATTGCCCGTGGTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACA                                                                      <  SRR4302533.1259881/94‑1 (MQ=60)

                          TTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACAC                                                                     >  SRR4302533.4641987/1‑94 (MQ=60)

                          TTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACAC                                                                     <  SRR4302533.223050/94‑1 (MQ=60)

                            AGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCT                                                                   >  SRR4302533.3238820/1‑94 (MQ=60)

                             GTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTG                                                                  <  SRR4302533.4968075/94‑1 (MQ=60)

                             GTGATCCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGAAGATTTGTCTGGCTACACCTG                                                                  <  SRR4302533.2979213/94‑1 (MQ=60)

                               GATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCG                                                                <  SRR4302533.5142298/94‑1 (MQ=60)

                               GATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCG                                                                <  SRR4302533.3566594/94‑1 (MQ=60)

                                ATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGC                                                               >  SRR4302533.1068220/1‑94 (MQ=60)

                                ATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGC                                                               <  SRR4302533.4300385/94‑1 (MQ=60)

                                ATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGC                                                               >  SRR4302533.4265511/1‑94 (MQ=60)

                                ATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGC                                                               >  SRR4302533.3026897/1‑94 (MQ=60)

                                 TTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCC                                                              >  SRR4302533.5020177/1‑94 (MQ=60)

                                 TTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCC                                                              <  SRR4302533.4371924/94‑1 (MQ=60)

                                   CTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTG                                                            >  SRR4302533.3011066/1‑94 (MQ=60)

                                     CGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTA                                                          >  SRR4302533.791468/1‑94 (MQ=60)

                                     CGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTA                                                          >  SRR4302533.806169/1‑94 (MQ=60)

                                     CGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTA                                                          <  SRR4302533.3711992/94‑1 (MQ=60)

                                      GCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAG                                                         >  SRR4302533.6020261/1‑94 (MQ=60)

                                      GCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAG                                                         >  SRR4302533.3411228/1‑94 (MQ=60)

                                      GCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAG                                                         >  SRR4302533.805595/1‑94 (MQ=60)

                                       CCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGC                                                        <  SRR4302533.2286022/94‑1 (MQ=60)

                                        CCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCC                                                       <  SRR4302533.1194777/94‑1 (MQ=60)

                                        CCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCC                                                       >  SRR4302533.3371965/1‑94 (MQ=60)

                                         CCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCG                                                      <  SRR4302533.4669345/94‑1 (MQ=60)

                                              CACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTC                                                 >  SRR4302533.2632709/1‑94 (MQ=60)

                                               ACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCC                                                <  SRR4302533.4057665/94‑1 (MQ=60)

                                                CGGCAGATTTTATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCC                                               <  SRR4302533.1579980/94‑1 (MQ=60)

                                                 GGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCC                                              <  SRR4302533.917832/94‑1 (MQ=60)

                                                 GGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCC                                              >  SRR4302533.1454035/1‑94 (MQ=60)

                                                 GGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCC                                              >  SRR4302533.5730943/1‑94 (MQ=60)

                                                 GGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCC                                              <  SRR4302533.4864976/94‑1 (MQ=60)

                                                 GGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCC                                              <  SRR4302533.4805985/94‑1 (MQ=60)

                                                 GGCAGATTTGATTGCCCGTGTGGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCC                                              <  SRR4302533.1006579/94‑1 (MQ=60)

                                                    AGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCC                                           >  SRR4302533.1259672/1‑94 (MQ=60)

                                                      ATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCAT                                         >  SRR4302533.3420312/1‑94 (MQ=60)

                                                      ATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCAT                                         >  SRR4302533.34064/1‑94 (MQ=60)

                                                       TTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATG                                        <  SRR4302533.2962380/94‑1 (MQ=60)

                                                         TGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAA                                      >  SRR4302533.558374/1‑94 (MQ=60)

                                                           ATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACC                                    <  SRR4302533.4713968/94‑1 (MQ=60)

                                                            TTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCA                                   >  SRR4302533.3342306/1‑94 (MQ=60)

                                                            TTGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCA                                   >  SRR4302533.5902530/1‑94 (MQ=60)

                                                             TGCCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAG                                  <  SRR4302533.5676598/94‑1 (MQ=60)

                                                               CCCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCA                                >  SRR4302533.3016561/1‑94 (MQ=60)

                                                                CCGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAG                               >  SRR4302533.1237748/1‑94 (MQ=60)

                                                                 CGTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGA                              >  SRR4302533.1590718/1‑94 (MQ=60)

                                                                  GTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGAT                             >  SRR4302533.3099645/1‑94 (MQ=60)

                                                                  GTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGAT                             >  SRR4302533.3557216/1‑94 (MQ=60)

                                                                  GTGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGAT                             >  SRR4302533.6291871/1‑94 (MQ=60)

                                                                  GTGTGGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGAT                             <  SRR4302533.524198/94‑1 (MQ=60)

                                                                   GGTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATG                            <  SRR4302533.2546490/94‑1 (MQ=60)

                                                                    GTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGT                           <  SRR4302533.1598571/94‑1 (MQ=60)

                                                                    GTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGT                           >  SRR4302533.2813883/1‑94 (MQ=60)

                                                                    GTTGCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGT                           >  SRR4302533.684391/1‑94 (MQ=60)

                                                                       GCTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACC                        <  SRR4302533.2389390/94‑1 (MQ=60)

                                                                        CTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCG                       <  SRR4302533.1491346/94‑1 (MQ=60)

                                                                        CTGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCG                       >  SRR4302533.6005650/1‑94 (MQ=60)

                                                                         TGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGT                      <  SRR4302533.6207445/94‑1 (MQ=60)

                                                                         TGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGT                      >  SRR4302533.2118363/1‑94 (MQ=60)

                                                                         TGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGT                      >  SRR4302533.245437/1‑94 (MQ=60)

                                                                         TGCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGT                      >  SRR4302533.5438735/1‑94 (MQ=60)

                                                                          GCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTG                     <  SRR4302533.1530799/94‑1 (MQ=60)

                                                                          GCCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTG                     >  SRR4302533.5034603/1‑94 (MQ=60)

                                                                           CCGGAATGGCGAATGCCCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGC                    <  SRR4302533.3232321/94‑1 (MQ=60)

                                                                           CCGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGC                    >  SRR4302533.501221/1‑94 (MQ=60)

                                                                            CGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCC                   <  SRR4302533.4257317/94‑1 (MQ=60)

                                                                            CGGAATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCC                   <  SRR4302533.5624925/94‑1 (MQ=60)

                                                                              GATTGGCTAATGACCCGCTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGC                 <  SRR4302533.5368119/94‑1 (MQ=60)

                                                                               AATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCT                >  SRR4302533.4549716/1‑94 (MQ=60)

                                                                               AATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCT                <  SRR4302533.4485118/94‑1 (MQ=60)

                                                                                ATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTG               <  SRR4302533.5560235/94‑1 (MQ=60)

                                                                                ATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTG               >  SRR4302533.2359171/1‑94 (MQ=60)

                                                                                ATGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTG               >  SRR4302533.743637/1‑94 (MQ=60)

                                                                                 TGGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGC              >  SRR4302533.1797785/1‑94 (MQ=60)

                                                                                  GGCGAATGACCCGGTATCGCCGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCC             <  SRR4302533.169640/94‑1 (MQ=60)

                                                                                  GGCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCC             <  SRR4302533.3915357/94‑1 (MQ=60)

                                                                                   GCGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCA            <  SRR4302533.1234558/94‑1 (MQ=60)

                                                                                    CTAATGACCCTGTATCGACGATTTGCCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAC           <  SRR4302533.4794173/94‑1 (MQ=60)

                                                                                    CGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAC           >  SRR4302533.5812810/1‑94 (MQ=60)

                                                                                    CGAATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGAAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAC           >  SRR4302533.725127/1‑94 (MQ=60)

                                                                                      AATGACCCGTTAGCGACGATTTGTCTGGCTACACATGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGC         <  SRR4302533.2526910/94‑1 (MQ=60)

                                                                                       ATGACCCGGTATCGACGATTTGTCTGGCTCCACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCA        <  SRR4302533.5866439/94‑1 (MQ=60)

                                                                                       ATGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCA        <  SRR4302533.259563/94‑1 (MQ=60)

                                                                                        TGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAG       <  SRR4302533.1858961/94‑1 (MQ=60)

                                                                                        TGACCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAG       >  SRR4302533.5573738/1‑94 (MQ=60)

                                                                                        GGACCCGGTATCGACGATTTGTCTGCCTACACCTGCGCCTGTAGCCGTCCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAG       <  SRR4302533.3693390/94‑1 (MQ=60)

                                                                                           CCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAT    >  SRR4302533.1750273/1‑94 (MQ=60)

                                                                                           CCCGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAT    >  SRR4302533.3552291/1‑94 (MQ=60)

                                                                                             CGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAA  >  SRR4302533.4963675/1‑94 (MQ=60)

                                                                                             CGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAA  <  SRR4302533.1401044/94‑1 (MQ=60)

ATATTGAGCTGGGTAAATGGGCTGATTTAGTGATTCTCGCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAA  >  NC_000913/3810581‑3810767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`