Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,812,423 T→C R101R (CGT→CGC)  b3641 → putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,812,4230TC100.0% 1349.9 / NA 414R101R (CGT→CGC) b3641putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (219/195);  total (219/195)

Only 100 of 431 total aligned reads displayed.

TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG  >  NC_000913/3812333‑3812512
                                                                                          |                                                                                         
tACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCaa                                                                                         >  1:2002814/1‑93 (MQ=255)
tACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCaa                                                                                         <  1:25140/93‑1 (MQ=255)
tACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCaa                                                                                         <  1:3168832/93‑1 (MQ=255)
 aCTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAt                                                                                        <  2:1605231/93‑1 (MQ=255)
   tCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATcc                                                                                      <  2:4743497/93‑1 (MQ=255)
   tCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATcc                                                                                      >  1:1889299/1‑93 (MQ=255)
   tCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATcc                                                                                      <  1:6448456/93‑1 (MQ=255)
   tCGCATCAACCTGATTCTGAAAGATGAGAAAAAGACCACAGCGCGCCTGAGTCTGCTTGCGTTGCTGCTTCTCGGTTTTGCTGAGCGCACTcc                                                                                      >  2:7022017/1‑93 (MQ=255)
    cGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGCGCGCAATCCt                                                                                     >  2:1254646/1‑93 (MQ=255)
    cGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCt                                                                                     <  1:4750529/93‑1 (MQ=255)
      cATCAACCTGATTCGGAAAGATGAGAAAGACACCACAGCGCGCCTGAGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTgg                                                                                   <  1:5264776/93‑1 (MQ=255)
       aTCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGc                                                                                  >  2:3256072/1‑93 (MQ=255)
       aTCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGc                                                                                  <  2:8680585/93‑1 (MQ=255)
       aTCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGc                                                                                  >  1:3604022/1‑93 (MQ=255)
        tCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGcc                                                                                 <  1:8851566/93‑1 (MQ=255)
        tCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGcc                                                                                 >  2:500951/1‑93 (MQ=255)
        tCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGcc                                                                                 <  1:2022670/93‑1 (MQ=255)
         cAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCt                                                                                >  1:4526644/1‑93 (MQ=255)
          aaCCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTg                                                                               >  2:9318589/1‑93 (MQ=255)
           aCCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGa                                                                              <  2:8181278/93‑1 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            <  1:755125/93‑1 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            <  2:5739943/93‑1 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            <  1:3272074/93‑1 (MQ=255)
              tGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAccc                                                                           <  2:1064398/93‑1 (MQ=255)
              tGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAccc                                                                           >  1:6730543/1‑93 (MQ=255)
              ggATTCTGAAAAATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAccc                                                                           <  2:8496086/92‑1 (MQ=255)
                   cTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATc                                                                      <  2:8058337/93‑1 (MQ=255)
                    tGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATcc                                                                     >  1:10002138/1‑93 (MQ=255)
                    tGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATcc                                                                     <  2:2855049/93‑1 (MQ=255)
                    tGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATcc                                                                     <  2:4170593/93‑1 (MQ=255)
                     gAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCt                                                                    <  1:5832357/93‑1 (MQ=255)
                     gAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCt                                                                    >  1:7077197/1‑93 (MQ=255)
                      aaaGAAGAGAAAGACACCACAGCGCGCCTGCGGCGGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTc                                                                   <  2:8277458/93‑1 (MQ=255)
                       aaGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCa                                                                  <  1:9357875/93‑1 (MQ=255)
                        aGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCAc                                                                 <  1:967047/93‑1 (MQ=255)
                        aGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCAc                                                                 <  1:7429691/93‑1 (MQ=255)
                        aGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCAc                                                                 >  2:2703711/1‑93 (MQ=255)
                          aTGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTg                                                               <  2:6860529/93‑1 (MQ=255)
                          aTGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTg                                                               >  1:6541681/1‑93 (MQ=255)
                           tGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTgg                                                              <  2:3940087/93‑1 (MQ=255)
                            gagaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGt                                                             <  1:7197915/93‑1 (MQ=255)
                            gagaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGt                                                             >  2:4300688/1‑93 (MQ=255)
                             agaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGGCATCCTGGGCTGCCCCGCAACATCACTGGTc                                                            >  1:3794093/1‑93 (MQ=255)
                             agaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTc                                                            <  1:4944309/93‑1 (MQ=255)
                              gaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCa                                                           >  1:1084801/1‑93 (MQ=255)
                               aaaGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCCTCCTCCCTGGTCAt                                                          >  2:2600953/1‑93 (MQ=255)
                               aaaGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAt                                                          <  1:7362364/93‑1 (MQ=255)
                               aaaGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAt                                                          <  2:7102293/93‑1 (MQ=255)
                                 aGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATgc                                                        <  2:9157622/93‑1 (MQ=255)
                                 aGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATgc                                                        <  1:1409355/93‑1 (MQ=255)
                                     accacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTa                                                    >  1:9473268/1‑93 (MQ=255)
                                     accacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTa                                                    >  2:5624317/1‑93 (MQ=255)
                                      ccacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTaa                                                   >  1:2728996/1‑93 (MQ=255)
                                         caGCGCGCCTGCGTCTGATTGTGATGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGt                                                <  1:8676007/93‑1 (MQ=255)
                                          aGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGtt                                               >  1:4811521/1‑93 (MQ=255)
                                              cgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGaa                                           >  2:6321492/1‑93 (MQ=255)
                                              cgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGaa                                           <  1:9764292/93‑1 (MQ=255)
                                              cgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGaa                                           >  1:8435825/1‑93 (MQ=255)
                                                  tGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAgg                                       <  1:500951/93‑1 (MQ=255)
                                                  tGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAgg                                       >  1:9576683/1‑93 (MQ=255)
                                                  tGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAgg                                       >  2:3468631/1‑93 (MQ=255)
                                                   gCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGa                                      >  1:3927379/1‑93 (MQ=255)
                                                     gTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATc                                    >  1:1617322/1‑93 (MQ=255)
                                                     ctCTGAGTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATc                                    <  2:4799379/92‑1 (MQ=255)
                                                      tCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCg                                   >  2:7290810/1‑93 (MQ=255)
                                                      tCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCg                                   >  1:6294073/1‑93 (MQ=255)
                                                      tCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCg                                   >  2:5386464/1‑93 (MQ=255)
                                                       cTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGc                                  <  2:6181468/93‑1 (MQ=255)
                                                        tGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGcc                                 >  2:8364548/1‑93 (MQ=255)
                                                        tGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGcc                                 >  2:4562847/1‑93 (MQ=255)
                                                           ttGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGc                              >  2:6029433/1‑93 (MQ=255)
                                                              tgtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGAGCTAATGTTTGAACAGGATCGCCTGCAAg                           <  1:4207455/93‑1 (MQ=255)
                                                               gtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAgg                          <  2:2974691/93‑1 (MQ=255)
                                                               gtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAgg                          <  1:3473943/93‑1 (MQ=255)
                                                                ttGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAggg                         >  2:793889/1‑93 (MQ=255)
                                                                ttGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAggg                         <  1:50828/93‑1 (MQ=255)
                                                                 tgctgcTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgc                        <  2:1394377/93‑1 (MQ=255)
                                                                  tctgctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgcg                       <  2:2341808/92‑1 (MQ=255)
                                                                  gctgctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgcg                       >  1:783143/1‑93 (MQ=255)
                                                                   ctgctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgcgc                      <  2:2060195/93‑1 (MQ=255)
                                                                     gctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAt                    >  1:4294039/1‑93 (MQ=255)
                                                                     gctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAt                    >  1:2939894/1‑93 (MQ=255)
                                                                     gctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAt                    >  1:5578975/1‑93 (MQ=255)
                                                                       ttCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCa                  >  2:3499966/1‑93 (MQ=255)
                                                                           cGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCa              >  2:3666973/1‑93 (MQ=255)
                                                                            ggTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAg             >  1:5663244/1‑93 (MQ=255)
                                                                            ggTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAg             >  1:2644850/1‑93 (MQ=255)
                                                                            ggTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATAGCCTGCAAGGGCGCATCAACCAg             >  2:7370546/1‑93 (MQ=255)
                                                                             gTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGc            >  2:9589420/1‑93 (MQ=255)
                                                                             gTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGc            >  1:8086356/1‑93 (MQ=255)
                                                                              ttttGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCt           <  2:1904516/93‑1 (MQ=255)
                                                                              ttttGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCt           <  2:8899848/93‑1 (MQ=255)
                                                                               tttGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTg          <  2:221121/93‑1 (MQ=255)
                                                                                  ggTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTc       >  2:6519689/1‑93 (MQ=255)
                                                                                    tGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGa     >  1:7654186/1‑93 (MQ=255)
                                                                                    tGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGa     >  1:9161714/1‑93 (MQ=255)
                                                                                     gAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAg    <  2:7720879/93‑1 (MQ=255)
                                                                                     gAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAg    <  2:9888908/93‑1 (MQ=255)
                                                                                      aGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGc   <  1:6234700/93‑1 (MQ=255)
                                                                                      aGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGc   >  1:9896641/1‑93 (MQ=255)
                                                                                          |                                                                                         
TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG  >  NC_000913/3812333‑3812512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 239 total aligned reads displayed.
GATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  NC_000913/3812330‑3812516
                                                                                             |                                                                                             
GATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGC                                                                                               >  SRR4302540.6676835/1‑94 (MQ=60)
GATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGC                                                                                               >  SRR4302540.6192957/1‑94 (MQ=60)
 ATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCA                                                                                              <  SRR4302540.6743356/94‑1 (MQ=60)
  TTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAA                                                                                             >  SRR4302540.582537/1‑94 (MQ=60)
  TTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAA                                                                                             >  SRR4302540.2024496/1‑94 (MQ=60)
  TTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAA                                                                                             >  SRR4302540.4077266/1‑94 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACTCCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            <  SRR4302540.3670205/94‑1 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            <  SRR4302540.25416/94‑1 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            <  SRR4302540.2738818/94‑1 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            <  SRR4302540.9709942/94‑1 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            <  SRR4302540.3203282/94‑1 (MQ=60)
    ACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATC                                                                                           <  SRR4302540.2033691/94‑1 (MQ=60)
    ACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATC                                                                                           <  SRR4302540.3074949/94‑1 (MQ=60)
     CTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCC                                                                                          <  SRR4302540.890942/94‑1 (MQ=60)
     CTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCC                                                                                          >  SRR4302540.1909980/1‑94 (MQ=60)
      TCGCATCATCCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCT                                                                                         <  SRR4302540.656094/94‑1 (MQ=60)
      TCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCT                                                                                         >  SRR4302540.8547496/1‑94 (MQ=60)
       CGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTG                                                                                        >  SRR4302540.9679770/1‑94 (MQ=60)
       CGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTG                                                                                        <  SRR4302540.2671777/94‑1 (MQ=60)
        GCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGG                                                                                       >  SRR4302540.8528200/1‑94 (MQ=60)
        GCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGG                                                                                       >  SRR4302540.7456947/1‑94 (MQ=60)
         CATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGC                                                                                      >  SRR4302540.3643404/1‑94 (MQ=60)
         CATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGC                                                                                      >  SRR4302540.8040993/1‑94 (MQ=60)
         CATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGC                                                                                      >  SRR4302540.9929732/1‑94 (MQ=60)
         CATCAACCTGATTCGGAAAGATGAGAAAGACACCACAGCGCGCCTGAGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGC                                                                                      <  SRR4302540.5322228/94‑1 (MQ=60)
          ATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCC                                                                                     <  SRR4302540.2751972/94‑1 (MQ=60)
           TCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCT                                                                                    <  SRR4302540.2044530/94‑1 (MQ=60)
            CAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTG                                                                                   <  SRR4302540.6145568/94‑1 (MQ=60)
            CAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTG                                                                                   <  SRR4302540.1063237/94‑1 (MQ=60)
            CAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTG                                                                                   >  SRR4302540.5063718/1‑94 (MQ=60)
             AACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGA                                                                                  >  SRR4302540.6293081/1‑94 (MQ=60)
              ACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAC                                                                                 >  SRR4302540.8149460/1‑94 (MQ=60)
              ACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCCGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAC                                                                                 >  SRR4302540.95498/1‑94 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                <  SRR4302540.9552866/94‑1 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                <  SRR4302540.4315590/94‑1 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                <  SRR4302540.7966799/94‑1 (MQ=60)
                CTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCC                                                                               >  SRR4302540.6804855/1‑94 (MQ=60)
                CTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCC                                                                               <  SRR4302540.3307790/94‑1 (MQ=60)
                CTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCC                                                                               <  SRR4302540.5554778/94‑1 (MQ=60)
                CTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCC                                                                               <  SRR4302540.763178/94‑1 (MQ=60)
                CTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTGTGGTGAGCGCAATCCTGGCCTGACCC                                                                               <  SRR4302540.3307789/94‑1 (MQ=60)
                 TGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCG                                                                              >  SRR4302540.5261629/1‑94 (MQ=60)
                 TGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCG                                                                              >  SRR4302540.8839573/1‑94 (MQ=60)
                  GATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGC                                                                             >  SRR4302540.6427880/1‑94 (MQ=60)
                   ATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCA                                                                            >  SRR4302540.7833238/1‑94 (MQ=60)
                    TTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCAT                                                                           <  SRR4302540.6346564/94‑1 (MQ=60)
                      CTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCC                                                                         >  SRR4302540.10118653/1‑94 (MQ=60)
                      CTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCC                                                                         >  SRR4302540.10063956/1‑94 (MQ=60)
                       TGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCT                                                                        <  SRR4302540.2663280/94‑1 (MQ=60)
                       TGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCT                                                                        >  SRR4302540.4741881/1‑94 (MQ=60)
                       TGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCT                                                                        >  SRR4302540.7155952/1‑94 (MQ=60)
                        GAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTC                                                                       >  SRR4302540.4469952/1‑94 (MQ=60)
                        GAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTC                                                                       <  SRR4302540.5896846/94‑1 (MQ=60)
                         AAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCA                                                                      >  SRR4302540.9399278/1‑94 (MQ=60)
                          AAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCAC                                                                     <  SRR4302540.9469325/94‑1 (MQ=60)
                          AAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCAC                                                                     <  SRR4302540.4988531/94‑1 (MQ=60)
                          AAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCAC                                                                     <  SRR4302540.395501/94‑1 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    >  SRR4302540.7453102/1‑94 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    <  SRR4302540.7512455/94‑1 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    <  SRR4302540.977025/94‑1 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    <  SRR4302540.1427968/94‑1 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCATGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    <  SRR4302540.4824454/94‑1 (MQ=60)
                            GATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTG                                                                   >  SRR4302540.6614273/1‑94 (MQ=60)
                            GATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTG                                                                   <  SRR4302540.9264113/94‑1 (MQ=60)
                             ATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGG                                                                  <  SRR4302540.9276532/94‑1 (MQ=60)
                             ATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGG                                                                  >  SRR4302540.2488136/1‑94 (MQ=60)
                             ATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGG                                                                  >  SRR4302540.1767594/1‑94 (MQ=60)
                               GAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTC                                                                <  SRR4302540.7278153/94‑1 (MQ=60)
                                AGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCA                                                               <  SRR4302540.4997678/94‑1 (MQ=60)
                                AGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCA                                                               >  SRR4302540.3930699/1‑94 (MQ=60)
                                AGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCA                                                               >  SRR4302540.1095923/1‑94 (MQ=60)
                                AGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCA                                                               >  SRR4302540.9692030/1‑94 (MQ=60)
                                 GAAAGACCCCCCAGCGCGCCTGCGTCTGATTGTGTTGCTGCTGCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCGGCATCCTCACTGGTCAT                                                              <  SRR4302540.9870281/94‑1 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              <  SRR4302540.9870280/94‑1 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              <  SRR4302540.9643760/94‑1 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              <  SRR4302540.3916074/94‑1 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              >  SRR4302540.111735/1‑94 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATGGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              <  SRR4302540.4845568/94‑1 (MQ=60)
                                  AAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATG                                                             >  SRR4302540.1958269/1‑94 (MQ=60)
                                   AAGACACTACAGCGCGCCTACGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGC                                                            <  SRR4302540.2850464/94‑1 (MQ=60)
                                   AAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGC                                                            <  SRR4302540.5176592/94‑1 (MQ=60)
                                    AGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCG                                                           <  SRR4302540.6362078/94‑1 (MQ=60)
                                    AGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCG                                                           >  SRR4302540.2822712/1‑94 (MQ=60)
                                    AGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCG                                                           <  SRR4302540.6717638/94‑1 (MQ=60)
                                    AGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGAAATCCTGGCCTGACCCCCATCCTCATTGGTCATGCC                                                           >  SRR4302540.2631290/1‑94 (MQ=60)
                                     GACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGC                                                          >  SRR4302540.336125/1‑94 (MQ=60)
                                      ACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCT                                                         <  SRR4302540.4395052/94‑1 (MQ=60)
                                       CACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCccccccccaccccccctcgtcattcgcca                                                        >  SRR4302540.7546216/1‑65 (MQ=60)
                                       CACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTA                                                        >  SRR4302540.9585630/1‑94 (MQ=60)
                                       CACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTA                                                        >  SRR4302540.2959649/1‑94 (MQ=60)
                                        CCCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAA                                                       <  SRR4302540.1236583/94‑1 (MQ=60)
                                        ACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAA                                                       >  SRR4302540.7389393/1‑94 (MQ=60)
                                        ACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAA                                                       >  SRR4302540.5401524/1‑94 (MQ=60)
                                        ACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAA                                                       >  SRR4302540.876571/1‑94 (MQ=60)
                                        ACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAA                                                       >  SRR4302540.2758434/1‑94 (MQ=60)
                                         CCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAT                                                      >  SRR4302540.7623318/1‑94 (MQ=60)
                                         CCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAT                                                      >  SRR4302540.2030403/1‑94 (MQ=60)
                                          CACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATG                                                     <  SRR4302540.8283892/94‑1 (MQ=60)
                                            CAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTT                                                   >  SRR4302540.4863020/1‑94 (MQ=60)
                                            CAGCGCGCCTGCGTCTGATTGTGATGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTT                                                   <  SRR4302540.8776777/94‑1 (MQ=60)
                                             AGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTT                                                  <  SRR4302540.4542301/94‑1 (MQ=60)
                                             AGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTT                                                  >  SRR4302540.5806489/1‑94 (MQ=60)
                                              GCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTG                                                 <  SRR4302540.7211992/94‑1 (MQ=60)
                                               CGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGA                                                >  SRR4302540.5098145/1‑94 (MQ=60)
                                               CGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGA                                                >  SRR4302540.5679663/1‑94 (MQ=60)
                                                GCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAA                                               >  SRR4302540.8533761/1‑94 (MQ=60)
                                                 CGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAAC                                              <  SRR4302540.9878803/94‑1 (MQ=60)
                                                 CGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAAC                                              >  SRR4302540.5650619/1‑94 (MQ=60)
                                                  GCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACA                                             <  SRR4302540.7722532/94‑1 (MQ=60)
                                                  GCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACA                                             >  SRR4302540.1959117/1‑94 (MQ=60)
                                                  GCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACA                                             >  SRR4302540.4007600/1‑94 (MQ=60)
                                                  GCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACA                                             <  SRR4302540.224230/94‑1 (MQ=60)
                                                  GCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACA                                             <  SRR4302540.3811632/94‑1 (MQ=60)
                                                   CCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAG                                            <  SRR4302540.5003865/94‑1 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           >  SRR4302540.9690031/1‑94 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           <  SRR4302540.9266378/94‑1 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           >  SRR4302540.1011722/1‑94 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           >  SRR4302540.9676485/1‑94 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           >  SRR4302540.5874155/1‑94 (MQ=60)
                                                     TGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGA                                          <  SRR4302540.506324/94‑1 (MQ=60)
                                                     TGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGA                                          >  SRR4302540.6495765/1‑94 (MQ=60)
                                                     TGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGA                                          >  SRR4302540.3969864/1‑94 (MQ=60)
                                                      GCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGAT                                         <  SRR4302540.7154149/94‑1 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATC                                        >  SRR4302540.1635058/1‑94 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATC                                        <  SRR4302540.6533651/94‑1 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATC                                        <  SRR4302540.3334169/94‑1 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       >  SRR4302540.4220044/1‑94 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       >  SRR4302540.7224085/1‑94 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       >  SRR4302540.6364153/1‑94 (MQ=60)
                                                          CTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCC                                     >  SRR4302540.7509667/1‑94 (MQ=60)
                                                            GATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTG                                   >  SRR4302540.6979314/1‑94 (MQ=60)
                                                            GATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTG                                   <  SRR4302540.7353164/94‑1 (MQ=60)
                                                            GATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTC                                   >  SRR4302540.6799368/1‑94 (MQ=60)
                                                             ATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGC                                  >  SRR4302540.1721421/1‑94 (MQ=60)
                                                              TTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCA                                 >  SRR4302540.3636043/1‑94 (MQ=60)
                                                              TTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCA                                 >  SRR4302540.3598611/1‑94 (MQ=60)
                                                               TGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAA                                >  SRR4302540.3132908/1‑94 (MQ=60)
                                                               TGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCCGCAA                                >  SRR4302540.4844243/1‑94 (MQ=60)
                                                                GTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAG                               >  SRR4302540.2744533/1‑94 (MQ=60)
                                                                 TGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGG                              >  SRR4302540.765401/1‑94 (MQ=60)
                                                                 TGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGG                              >  SRR4302540.9443385/1‑94 (MQ=60)
                                                                 TGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGAGCTAATGTTTGAACAGGATCGCCTGCAAGG                              <  SRR4302540.4253255/94‑1 (MQ=60)
                                                                  GTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGG                             <  SRR4302540.7853805/94‑1 (MQ=60)
                                                                  GTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGG                             <  SRR4302540.8290294/94‑1 (MQ=60)
                                                                  GTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGG                             <  SRR4302540.9942062/94‑1 (MQ=60)
                                                                  GTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGG                             <  SRR4302540.3511772/94‑1 (MQ=60)
                                                                  GTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGG                             >  SRR4302540.1352358/1‑94 (MQ=60)
                                                                   TTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGC                            <  SRR4302540.5080746/94‑1 (MQ=60)
                                                                   TTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGC                            <  SRR4302540.51337/94‑1 (MQ=60)
                                                                   TTGCTGCTTCTCGGTGTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGC                            <  SRR4302540.6379407/94‑1 (MQ=60)
                                                                    TGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCG                           <  SRR4302540.4628521/94‑1 (MQ=60)
                                                                    TGCTGCTTCTCGGTTTTGGTGAGAGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCG                           >  SRR4302540.7599578/1‑94 (MQ=60)
                                                                     GCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGC                          >  SRR4302540.4598370/1‑94 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAT                        >  SRR4302540.185371/1‑94 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAT                        >  SRR4302540.501899/1‑94 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAT                        >  SRR4302540.5640384/1‑94 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAT                        >  SRR4302540.2972175/1‑94 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAT                        >  SRR4302540.8189580/1‑94 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAT                        >  SRR4302540.4340754/1‑94 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAACGGCGCAT                        >  SRR4302540.4340753/1‑94 (MQ=60)
                                                                        GCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATC                       >  SRR4302540.7825807/1‑94 (MQ=60)
                                                                        GCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATC                       >  SRR4302540.4669691/1‑94 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCA                      <  SRR4302540.3222869/94‑1 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCA                      <  SRR4302540.6604499/94‑1 (MQ=60)
                                                                          TTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAA                     >  SRR4302540.5008025/1‑94 (MQ=60)
                                                                          TTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAA                     >  SRR4302540.1481815/1‑94 (MQ=60)
                                                                           TCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAAC                    <  SRR4302540.8877756/94‑1 (MQ=60)
                                                                            CTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACC                   <  SRR4302540.3720865/94‑1 (MQ=60)
                                                                            CTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGCGCGCATCAACC                   >  SRR4302540.10097298/1‑94 (MQ=60)
                                                                             TCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCA                  >  SRR4302540.9743250/1‑94 (MQ=60)
                                                                              CGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAG                 >  SRR4302540.737113/1‑94 (MQ=60)
                                                                              CGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAG                 >  SRR4302540.2673541/1‑94 (MQ=60)
                                                                              CGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAG                 <  SRR4302540.203257/94‑1 (MQ=60)
                                                                              CGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAG                 >  SRR4302540.5725607/1‑94 (MQ=60)
                                                                               GGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGC                >  SRR4302540.8180214/1‑94 (MQ=60)
                                                                               GGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGC                >  SRR4302540.1603151/1‑94 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               >  SRR4302540.7699636/1‑94 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               <  SRR4302540.5551980/94‑1 (MQ=60)
                                                                                 TTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTG              <  SRR4302540.7371658/94‑1 (MQ=60)
                                                                                  TTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGT             >  SRR4302540.4888302/1‑94 (MQ=60)
                                                                                  TTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGT             <  SRR4302540.2445654/94‑1 (MQ=60)
                                                                                  TTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGT             <  SRR4302540.3386847/94‑1 (MQ=60)
                                                                                      GTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGA         >  SRR4302540.3268710/1‑94 (MQ=60)
                                                                                      GTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGA         >  SRR4302540.7740357/1‑94 (MQ=60)
                                                                                      GTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGA         >  SRR4302540.9271668/1‑94 (MQ=60)
                                                                                        GAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGC       >  SRR4302540.5305465/1‑94 (MQ=60)
                                                                                        GAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGC       >  SRR4302540.8991575/1‑94 (MQ=60)
                                                                                        GAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGC       >  SRR4302540.10012220/1‑94 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      <  SRR4302540.6304042/94‑1 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      <  SRR4302540.6652620/94‑1 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      <  SRR4302540.6304041/94‑1 (MQ=60)
                                                                                          GCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGT     >  SRR4302540.9607281/1‑94 (MQ=60)
                                                                                          GCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGT     >  SRR4302540.4737867/1‑94 (MQ=60)
                                                                                            GCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTAT   >  SRR4302540.4777763/1‑94 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  SRR4302540.2425765/1‑94 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  SRR4302540.2441257/1‑94 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  <  SRR4302540.2718221/94‑1 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  SRR4302540.8341367/1‑94 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  SRR4302540.4187614/1‑94 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  <  SRR4302540.1006922/94‑1 (MQ=60)
                                                                                             |                                                                                             
GATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  NC_000913/3812330‑3812516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑