Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,812,423 T→C R101R (CGT→CGC)  b3641 → putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,812,4230TC100.0% 972.6 / NA 301R101R (CGT→CGC) b3641putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (157/144);  total (157/144)

Only 100 of 308 total aligned reads displayed.

TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG  >  NC_000913/3812333‑3812512
                                                                                          |                                                                                         
tACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCaa                                                                                         <  2:2051725/93‑1 (MQ=255)
 aCTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAt                                                                                        <  2:1892464/93‑1 (MQ=255)
 aCTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAt                                                                                        >  2:3996226/1‑93 (MQ=255)
  cTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATc                                                                                       <  2:1483063/93‑1 (MQ=255)
   tCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATcc                                                                                      >  2:4632054/1‑93 (MQ=255)
   tCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATcc                                                                                      <  1:2254434/93‑1 (MQ=255)
    cGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCt                                                                                     <  1:5295402/93‑1 (MQ=255)
    cGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCt                                                                                     <  2:2311939/93‑1 (MQ=255)
    cGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCt                                                                                     <  1:2493402/93‑1 (MQ=255)
      cATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTgg                                                                                   <  2:2493753/93‑1 (MQ=255)
       aTCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGc                                                                                  >  2:4042658/1‑93 (MQ=255)
       aTCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGc                                                                                  >  1:3226958/1‑93 (MQ=255)
       aTCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGc                                                                                  >  1:4436740/1‑93 (MQ=255)
        tCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGcc                                                                                 >  1:422823/1‑93 (MQ=255)
          aaCCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTg                                                                               <  1:2978672/93‑1 (MQ=255)
           aCCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGa                                                                              >  1:845378/1‑93 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            >  1:5980072/1‑93 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            >  1:5618211/1‑93 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            >  1:1162031/1‑93 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            >  1:4611586/1‑93 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            >  1:3936433/1‑93 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            <  2:540189/93‑1 (MQ=255)
               gATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCg                                                                          <  1:1553932/93‑1 (MQ=255)
                aTTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGTCTGACCCGc                                                                         >  2:2614126/1‑93 (MQ=255)
                 ttCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCa                                                                        >  2:4798063/1‑93 (MQ=255)
                    tGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATcc                                                                     >  1:2047344/1‑93 (MQ=255)
                      aaaGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTc                                                                   <  2:1723466/93‑1 (MQ=255)
                      aaaGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTc                                                                   >  2:2542689/1‑93 (MQ=255)
                      aaaGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTc                                                                   <  1:6294497/93‑1 (MQ=255)
                      aaaGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTc                                                                   <  1:505673/93‑1 (MQ=255)
                       aaGATGAGAAAGCCGCCACAGCCCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCa                                                                  <  2:449918/93‑1 (MQ=255)
                        aGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCAc                                                                 <  2:5050323/93‑1 (MQ=255)
                         gATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACt                                                                >  1:6197378/1‑93 (MQ=255)
                          aTGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTg                                                               <  2:194874/93‑1 (MQ=255)
                           tGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTgg                                                              >  1:257772/1‑93 (MQ=255)
                             agaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTc                                                            >  1:2322586/1‑93 (MQ=255)
                               aaaGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAt                                                          >  1:5223560/1‑93 (MQ=255)
                                aaGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATg                                                         <  1:1493044/93‑1 (MQ=255)
                                aaGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATg                                                         >  1:4804977/1‑93 (MQ=255)
                                 aGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATgc                                                        <  2:4140945/93‑1 (MQ=255)
                                  gACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATgcg                                                       >  1:5517894/1‑93 (MQ=255)
                                    caccacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCt                                                     >  1:5398941/1‑93 (MQ=255)
                                      ccacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTat                                                   >  1:5850896/1‑92 (MQ=255)
                                       cacaGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAt                                                  <  2:100940/93‑1 (MQ=255)
                                        acaGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATg                                                 >  1:4571582/1‑93 (MQ=255)
                                           gcgcgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGttt                                              <  2:432017/93‑1 (MQ=255)
                                            cgcgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTg                                             <  1:4350748/93‑1 (MQ=255)
                                                ccTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACa                                         >  2:1801786/1‑93 (MQ=255)
                                                ccTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACa                                         >  1:2808724/1‑93 (MQ=255)
                                                ccTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACa                                         <  2:3212936/93‑1 (MQ=255)
                                                ccTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACa                                         <  2:3939433/93‑1 (MQ=255)
                                                 cTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAg                                        <  1:4112571/93‑1 (MQ=255)
                                                 cTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAg                                        >  1:570310/1‑93 (MQ=255)
                                                  tGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAgg                                       >  2:6052219/1‑93 (MQ=255)
                                                  tGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAgg                                       >  1:2647044/1‑93 (MQ=255)
                                                  tGCGTCTGATTGTGTTGCGGCTTCTCGGTTTTGGGGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGGTATGCGCTAATGTTGGAACAgg                                       >  1:288645/1‑93 (MQ=255)
                                                   gCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGa                                      <  1:3686509/93‑1 (MQ=255)
                                                    cGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGAt                                     <  1:4998872/93‑1 (MQ=255)
                                                    cGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGAt                                     <  2:3760951/93‑1 (MQ=255)
                                                     gTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATc                                    <  2:5156988/93‑1 (MQ=255)
                                                       cTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGc                                  <  2:2884595/93‑1 (MQ=255)
                                                        tGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGcc                                 >  2:352397/1‑93 (MQ=255)
                                                         gATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCt                                >  2:953871/1‑93 (MQ=255)
                                                         gATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCt                                >  2:1538750/1‑93 (MQ=255)
                                                           ttGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGc                              <  1:985548/93‑1 (MQ=255)
                                                           ttGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGc                              >  2:2644579/1‑93 (MQ=255)
                                                             gtgtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGGACAGGATCGACTGCaa                            >  2:5533250/1‑93 (MQ=255)
                                                             gtgtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCaa                            >  1:1366003/1‑93 (MQ=255)
                                                             gtgtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCaa                            <  2:741671/93‑1 (MQ=255)
                                                               gtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAgg                          <  2:327751/93‑1 (MQ=255)
                                                               gtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAgg                          <  1:5956642/93‑1 (MQ=255)
                                                                ttGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAggg                         <  1:716532/93‑1 (MQ=255)
                                                                ttGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAggg                         <  2:4206878/93‑1 (MQ=255)
                                                                 tgctgcTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGCCCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgc                        <  2:3142257/93‑1 (MQ=255)
                                                                   ctgctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgcgc                      >  1:791384/1‑93 (MQ=255)
                                                                   ctgctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgcgc                      <  2:5276948/93‑1 (MQ=255)
                                                                   ctgctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgcgc                      >  2:2098258/1‑93 (MQ=255)
                                                                    tgctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCa                     >  1:5153454/1‑93 (MQ=255)
                                                                      ctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCTCCTGCAAGGGCGCATc                   <  1:3478261/93‑1 (MQ=255)
                                                                      ctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATc                   <  1:1889812/93‑1 (MQ=255)
                                                                      ctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATc                   <  2:6276236/93‑1 (MQ=255)
                                                                       ttCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCa                  >  1:3168862/1‑93 (MQ=255)
                                                                       ttCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCa                  >  2:2206503/1‑93 (MQ=255)
                                                                       ttCTCGGTGTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCa                  <  2:1237033/93‑1 (MQ=255)
                                                                        tctcGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCaa                 <  1:472933/93‑1 (MQ=255)
                                                                         ctcGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAAc                <  2:5704868/93‑1 (MQ=255)
                                                                         ctcGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAAc                >  2:5065515/1‑93 (MQ=255)
                                                                           cGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCa              <  2:4718943/93‑1 (MQ=255)
                                                                             gTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGc            <  2:273336/93‑1 (MQ=255)
                                                                             gTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGc            <  1:5568993/93‑1 (MQ=255)
                                                                             gTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGc            <  1:1855740/93‑1 (MQ=255)
                                                                             gTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGc            >  2:839584/1‑93 (MQ=255)
                                                                              ttttGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCt           <  2:2430234/93‑1 (MQ=255)
                                                                                ttGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGt         >  2:6187606/1‑93 (MQ=255)
                                                                                 tGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGtt        <  2:4172032/93‑1 (MQ=255)
                                                                                 tGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGtt        <  1:1680293/93‑1 (MQ=255)
                                                                                  ggTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTc       >  2:1325849/1‑93 (MQ=255)
                                                                                     gAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAg    <  2:1643213/93‑1 (MQ=255)
                                                                                     gAGCGAAATCCTGACCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAg    <  2:5451744/93‑1 (MQ=255)
                                                                                      aGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGc   >  1:4762105/1‑93 (MQ=255)
                                                                                          |                                                                                         
TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG  >  NC_000913/3812333‑3812512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  NC_000913/3812330‑3812516
                                                                                             |                                                                                             
GATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGC                                                                                               <  SRR4302533.4676508/94‑1 (MQ=60)
GATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGC                                                                                               >  SRR4302533.2028946/1‑94 (MQ=60)
  TTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGTGCGCAA                                                                                             >  SRR4302533.4544356/1‑94 (MQ=60)
  TTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAA                                                                                             >  SRR4302533.5555145/1‑94 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            <  SRR4302533.5105130/94‑1 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            >  SRR4302533.5605553/1‑94 (MQ=60)
     CTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCC                                                                                          <  SRR4302533.57962/94‑1 (MQ=60)
     CTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCC                                                                                          >  SRR4302533.865115/1‑94 (MQ=60)
      TCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCT                                                                                         <  SRR4302533.2268374/94‑1 (MQ=60)
       CGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTG                                                                                        <  SRR4302533.2508782/94‑1 (MQ=60)
       CGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTG                                                                                        <  SRR4302533.5327117/94‑1 (MQ=60)
        GCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGG                                                                                       <  SRR4302533.6269493/94‑1 (MQ=60)
         CATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGC                                                                                      >  SRR4302533.3246852/1‑94 (MQ=60)
         CATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGC                                                                                      >  SRR4302533.6004661/1‑94 (MQ=60)
         CATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGC                                                                                      >  SRR4302533.4463561/1‑94 (MQ=60)
         CATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGAGCAATCCTGGC                                                                                      >  SRR4302533.3743745/1‑94 (MQ=60)
          ATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCC                                                                                     >  SRR4302533.425354/1‑94 (MQ=60)
          ATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCC                                                                                     >  SRR4302533.4591540/1‑94 (MQ=60)
          ATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCC                                                                                     >  SRR4302533.878001/1‑94 (MQ=60)
          ATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCC                                                                                     <  SRR4302533.809250/94‑1 (MQ=60)
            CAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTG                                                                                   <  SRR4302533.2613485/94‑1 (MQ=60)
            CAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTG                                                                                   <  SRR4302533.23234/94‑1 (MQ=60)
             AACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGA                                                                                  >  SRR4302533.850323/1‑94 (MQ=60)
             AACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGA                                                                                  <  SRR4302533.2996896/94‑1 (MQ=60)
             AACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGA                                                                                  >  SRR4302533.475773/1‑94 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                >  SRR4302533.5652169/1‑94 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                <  SRR4302533.2596872/94‑1 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                >  SRR4302533.1169003/1‑94 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                >  SRR4302533.4639526/1‑94 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                >  SRR4302533.6016294/1‑94 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                >  SRR4302533.3960463/1‑94 (MQ=60)
                CTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTCGGTGAGCGCAATCCTGGCCTGACCC                                                                               >  SRR4302533.5066045/1‑94 (MQ=60)
                  GATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGC                                                                             <  SRR4302533.1563288/94‑1 (MQ=60)
                      CTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCC                                                                         <  SRR4302533.1420221/94‑1 (MQ=60)
                      CTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCC                                                                         >  SRR4302533.2059969/1‑94 (MQ=60)
                      CTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCC                                                                         >  SRR4302533.5447618/1‑94 (MQ=60)
                       TGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCT                                                                        >  SRR4302533.5998387/1‑94 (MQ=60)
                       TGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCT                                                                        >  SRR4302533.1884233/1‑94 (MQ=60)
                        GAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGTCCCGCATCCTC                                                                       >  SRR4302533.6259455/1‑94 (MQ=60)
                        GAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTC                                                                       >  SRR4302533.5488572/1‑94 (MQ=60)
                        GAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTC                                                                       >  SRR4302533.5255720/1‑94 (MQ=60)
                        GAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTC                                                                       <  SRR4302533.4633310/94‑1 (MQ=60)
                         AAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCA                                                                      <  SRR4302533.508675/94‑1 (MQ=60)
                         AAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCA                                                                      >  SRR4302533.1634247/1‑94 (MQ=60)
                         AAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCA                                                                      <  SRR4302533.6332019/94‑1 (MQ=60)
                          AAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCAC                                                                     <  SRR4302533.6335785/94‑1 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    <  SRR4302533.1893333/94‑1 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    >  SRR4302533.6234558/1‑94 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    >  SRR4302533.1724136/1‑94 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    <  SRR4302533.1771883/94‑1 (MQ=60)
                            GATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTG                                                                   <  SRR4302533.4335098/94‑1 (MQ=60)
                             ATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGG                                                                  >  SRR4302533.259338/1‑94 (MQ=60)
                             ATGAGAAAGACACCACAGCGCGCCTGCGTCTGACTGTGTTGCTGCTTCTCGGGTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGG                                                                  >  SRR4302533.6150627/1‑94 (MQ=60)
                               GAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTC                                                                <  SRR4302533.4454345/94‑1 (MQ=60)
                               GAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTC                                                                >  SRR4302533.2124204/1‑94 (MQ=60)
                               GAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTC                                                                >  SRR4302533.2336959/1‑94 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              >  SRR4302533.5254986/1‑94 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              <  SRR4302533.2955229/94‑1 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              >  SRR4302533.480975/1‑94 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              <  SRR4302533.276252/94‑1 (MQ=60)
                                  AAAGACACCACAGCGCGCCTGCGTCTTATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATG                                                             >  SRR4302533.52288/1‑94 (MQ=60)
                                  AAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATG                                                             <  SRR4302533.5890271/94‑1 (MQ=60)
                                  AAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATG                                                             >  SRR4302533.4834074/1‑94 (MQ=60)
                                   AAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGC                                                            <  SRR4302533.1502048/94‑1 (MQ=60)
                                   AAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACACGCATCCTCACTGGTCATGC                                                            >  SRR4302533.1374398/1‑94 (MQ=60)
                                    AGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCG                                                           >  SRR4302533.5551211/1‑94 (MQ=60)
                                      ACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCT                                                         >  SRR4302533.5431385/1‑94 (MQ=60)
                                       CACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTA                                                        >  SRR4302533.651617/1‑94 (MQ=60)
                                       CACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTA                                                        >  SRR4302533.5319045/1‑94 (MQ=60)
                                       CACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTA                                                        >  SRR4302533.5231708/1‑94 (MQ=60)
                                        ACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAT                                                       >  SRR4302533.5886269/1‑94 (MQ=60)
                                          CACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATG                                                     >  SRR4302533.4984963/1‑94 (MQ=60)
                                          CACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATG                                                     >  SRR4302533.6119040/1‑94 (MQ=60)
                                          CACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATG                                                     >  SRR4302533.4599286/1‑94 (MQ=60)
                                          CACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATG                                                     <  SRR4302533.2587734/94‑1 (MQ=60)
                                          CACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATG                                                     <  SRR4302533.2929713/94‑1 (MQ=60)
                                          CACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATG                                                     >  SRR4302533.1958295/1‑94 (MQ=60)
                                               CGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGA                                                <  SRR4302533.4377002/94‑1 (MQ=60)
                                               CGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGA                                                >  SRR4302533.5418373/1‑94 (MQ=60)
                                                  GCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACA                                             >  SRR4302533.2826007/1‑94 (MQ=60)
                                                  GCCTGCGTCTGATGGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACA                                             <  SRR4302533.3188631/94‑1 (MQ=60)
                                                   CCTGCGTTTGATTGTGTTGCTGCTTCTCGGTTTTGTTGAGCGCAAGCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAG                                            <  SRR4302533.749170/94‑1 (MQ=60)
                                                   CCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAG                                            >  SRR4302533.573678/1‑94 (MQ=60)
                                                   CCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAG                                            <  SRR4302533.5691375/94‑1 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           >  SRR4302533.2663305/1‑94 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           >  SRR4302533.4806193/1‑94 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           <  SRR4302533.4137565/94‑1 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCGGCTTCTCGGTTTTGGGGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGGTATGCGCTAATGTTGGAACAGG                                           >  SRR4302533.290407/1‑94 (MQ=60)
                                                      GCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGAT                                         <  SRR4302533.4726994/94‑1 (MQ=60)
                                                      GCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGAT                                         <  SRR4302533.3709167/94‑1 (MQ=60)
                                                      GCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGAT                                         <  SRR4302533.344701/94‑1 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATC                                        <  SRR4302533.5578544/94‑1 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATC                                        <  SRR4302533.5029176/94‑1 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATC                                        >  SRR4302533.4439748/1‑94 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       >  SRR4302533.2326286/1‑94 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       >  SRR4302533.3240746/1‑94 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       <  SRR4302533.5607467/94‑1 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       <  SRR4302533.2702038/94‑1 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       >  SRR4302533.1186629/1‑94 (MQ=60)
                                                         TCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGC                                      >  SRR4302533.5148732/1‑94 (MQ=60)
                                                           TGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCT                                    >  SRR4302533.4212791/1‑94 (MQ=60)
                                                           TGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCT                                    <  SRR4302533.5739317/94‑1 (MQ=60)
                                                            TATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTG                                   <  SRR4302533.3066594/94‑1 (MQ=60)
                                                              TTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCA                                 <  SRR4302533.991318/94‑1 (MQ=60)
                                                              TTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCA                                 <  SRR4302533.484685/94‑1 (MQ=60)
                                                              TTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCA                                 <  SRR4302533.776309/94‑1 (MQ=60)
                                                               TGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAA                                >  SRR4302533.1374216/1‑94 (MQ=60)
                                                               TGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAA                                >  SRR4302533.4658528/1‑94 (MQ=60)
                                                               TGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAA                                >  SRR4302533.4522156/1‑94 (MQ=60)
                                                               TGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAA                                >  SRR4302533.3278730/1‑94 (MQ=60)
                                                                GTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCGCTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAG                               <  SRR4302533.4181398/94‑1 (MQ=60)
                                                                 TGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGG                              >  SRR4302533.841338/1‑94 (MQ=60)
                                                                 TGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGG                              <  SRR4302533.2046480/94‑1 (MQ=60)
                                                                 TGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGG                              <  SRR4302533.2829659/94‑1 (MQ=60)
                                                                  GTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGG                             <  SRR4302533.5992675/94‑1 (MQ=60)
                                                                  GTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGG                             >  SRR4302533.3620394/1‑94 (MQ=60)
                                                                   TTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGC                            <  SRR4302533.4775369/94‑1 (MQ=60)
                                                                   TTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGC                            <  SRR4302533.720756/94‑1 (MQ=60)
                                                                     GCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGC                          >  SRR4302533.796041/1‑94 (MQ=60)
                                                                      CTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCA                         >  SRR4302533.5184582/1‑94 (MQ=60)
                                                                      CTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCA                         >  SRR4302533.5730081/1‑94 (MQ=60)
                                                                      CTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCA                         >  SRR4302533.2173727/1‑94 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAT                        >  SRR4302533.3701805/1‑94 (MQ=60)
                                                                        GCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATC                       >  SRR4302533.4105209/1‑94 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCTCCTGCAAGGGCGCATCA                      <  SRR4302533.3499722/94‑1 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCA                      >  SRR4302533.3188363/1‑94 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCA                      >  SRR4302533.5639274/1‑94 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCA                      <  SRR4302533.1901352/94‑1 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCA                      >  SRR4302533.2777944/1‑94 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCA                      <  SRR4302533.1590275/94‑1 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCA                      <  SRR4302533.3105081/94‑1 (MQ=60)
                                                                          TTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAA                     >  SRR4302533.997181/1‑94 (MQ=60)
                                                                           TCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAAC                    <  SRR4302533.475760/94‑1 (MQ=60)
                                                                             TCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGATTGAACAGGATCGACTGCAAGGGCGCATCAACCA                  >  SRR4302533.542500/1‑94 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               <  SRR4302533.5602656/94‑1 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               <  SRR4302533.1867057/94‑1 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               >  SRR4302533.2482443/1‑94 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               >  SRR4302533.2566072/1‑94 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               >  SRR4302533.2886769/1‑94 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               >  SRR4302533.3887186/1‑94 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAAAAGGATCGCCTGCAAGGGCGCATCAACCAGCT               <  SRR4302533.1504666/94‑1 (MQ=60)
                                                                                GTGTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               <  SRR4302533.1003954/94‑1 (MQ=60)
                                                                                   TTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTT            <  SRR4302533.1283630/94‑1 (MQ=60)
                                                                                    TGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTC           <  SRR4302533.5923838/94‑1 (MQ=60)
                                                                                    TGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTC           <  SRR4302533.1690472/94‑1 (MQ=60)
                                                                                      GTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGA         <  SRR4302533.4340887/94‑1 (MQ=60)
                                                                                       TGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAG        <  SRR4302533.4612770/94‑1 (MQ=60)
                                                                                        GAGCGCAATCCTGGCCTGCCCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGC       <  SRR4302533.4029920/94‑1 (MQ=60)
                                                                                        GAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGC       >  SRR4302533.4790990/1‑94 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      <  SRR4302533.2495392/94‑1 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      <  SRR4302533.5041472/94‑1 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      <  SRR4302533.1541633/94‑1 (MQ=60)
                                                                                           CGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTA    <  SRR4302533.1027669/94‑1 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  <  SRR4302533.1860918/94‑1 (MQ=60)
                                                                                             |                                                                                             
GATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  NC_000913/3812330‑3812516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑