Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,838,693 A→G I280T (ATC→ACC)  yicM ← putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,838,6930AG100.0% 962.8 / NA 297I280T (ATC→ACC) yicMputative transport protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (114/183);  total (114/183)

Only 100 of 304 total aligned reads displayed.

GTTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGC  >  NC_000913/3838603‑3838782
                                                                                          |                                                                                         
gTTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTg                                                                                         <  1:3126179/93‑1 (MQ=255)
     gCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACGTGAAGGTGGCGat                                                                                    <  2:6306114/93‑1 (MQ=255)
         tCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGatcatc                                                                                >  1:1763717/1‑93 (MQ=255)
          ccACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATcc                                                                               <  2:2328101/93‑1 (MQ=255)
           cACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATccc                                                                              <  2:1765480/93‑1 (MQ=255)
               ccGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGcc                                                                          >  2:4404436/1‑93 (MQ=255)
               ccGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGcc                                                                          <  2:1066817/93‑1 (MQ=255)
                cGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCa                                                                         <  1:6136364/93‑1 (MQ=255)
                cGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCa                                                                         <  2:905159/93‑1 (MQ=255)
                 gAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCAt                                                                        <  2:4599420/93‑1 (MQ=255)
                 gAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCAt                                                                        <  1:213610/93‑1 (MQ=255)
                  aaTCCCGCCAGGCTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGACAGACATGAAGGCGGCGATCATCCCTGCCATc                                                                       >  2:1883275/1‑93 (MQ=255)
                       cGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACAcc                                                                  <  1:1115351/93‑1 (MQ=255)
                       cGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACAcc                                                                  <  2:2067253/93‑1 (MQ=255)
                        gCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACAccc                                                                 <  2:5077312/93‑1 (MQ=255)
                        gCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACAccc                                                                 >  2:3917013/1‑93 (MQ=255)
                        gCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACAccc                                                                 >  1:2578482/1‑93 (MQ=255)
                         ccAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCg                                                                >  1:990970/1‑93 (MQ=255)
                         ccAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCg                                                                <  2:1739834/93‑1 (MQ=255)
                          cAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCgg                                                               >  2:3379946/1‑93 (MQ=255)
                           aGGTTCATATACGCCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCCAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGa                                                              <  1:4444759/93‑1 (MQ=255)
                           aGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGa                                                              <  2:5499723/93‑1 (MQ=255)
                           aGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGa                                                              <  1:5268822/93‑1 (MQ=255)
                           aGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGa                                                              <  2:315689/93‑1 (MQ=255)
                           aGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGa                                                              >  2:3091877/1‑93 (MQ=255)
                              ttCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGt                                                           <  2:36745/93‑1 (MQ=255)
                              ttCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGt                                                           <  2:1496393/93‑1 (MQ=255)
                              ttCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGt                                                           >  1:5497395/1‑93 (MQ=255)
                               tCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGtt                                                          <  1:212024/93‑1 (MQ=255)
                               tCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCAGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGtt                                                          <  1:3612823/93‑1 (MQ=255)
                                cATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTg                                                         <  1:5412524/93‑1 (MQ=255)
                                 atatACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGt                                                        >  2:1271899/1‑93 (MQ=255)
                                 atatACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGt                                                        <  2:2192447/93‑1 (MQ=255)
                                 atatACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGt                                                        <  2:5166194/93‑1 (MQ=255)
                                  tataCACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGta                                                       <  1:5610797/93‑1 (MQ=255)
                                  tataCACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGta                                                       <  1:5823398/93‑1 (MQ=255)
                                   ataCACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGtaa                                                      <  2:4959253/93‑1 (MQ=255)
                                   ataCACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGtaa                                                      <  1:3897524/93‑1 (MQ=255)
                                    taCACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGtaat                                                     >  2:2814515/1‑93 (MQ=255)
                                    taCACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGtaat                                                     <  2:1334557/93‑1 (MQ=255)
                                      cacCGGGCGAATATACGTGAAGAAAGCAACCTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGtaataa                                                   <  1:1375156/93‑1 (MQ=255)
                                      cacCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGtaataa                                                   <  2:5883665/93‑1 (MQ=255)
                                      cacCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGGTGtaataa                                                   >  1:2179877/1‑93 (MQ=255)
                                       cccGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAg                                                  <  1:1620131/92‑1 (MQ=255)
                                        ccGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGc                                                 <  2:1035414/93‑1 (MQ=255)
                                          gggCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCgg                                               >  2:3557708/1‑93 (MQ=255)
                                           ggCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGa                                              <  1:4671211/93‑1 (MQ=255)
                                           ggCGAATATACGCGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGa                                              >  2:57443/1‑93 (MQ=255)
                                              gAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAg                                           <  2:6009264/93‑1 (MQ=255)
                                               aaTATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGCAAGt                                          >  2:3823821/1‑93 (MQ=255)
                                               aaTATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGt                                          >  1:1036163/1‑93 (MQ=255)
                                                atatACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTa                                         >  1:3575160/1‑93 (MQ=255)
                                                 tataCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAt                                        >  1:3734462/1‑93 (MQ=255)
                                                  ataCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAtt                                       <  2:262482/93‑1 (MQ=255)
                                                   taCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAttt                                      >  2:6232216/1‑93 (MQ=255)
                                                   taCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAttt                                      >  1:2546519/1‑93 (MQ=255)
                                                   taCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAttt                                      <  1:2463244/93‑1 (MQ=255)
                                                   taCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAttt                                      >  2:5819925/1‑93 (MQ=255)
                                                    aCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAtttt                                     <  1:66585/93‑1 (MQ=255)
                                                    aCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAtttt                                     <  2:4804411/93‑1 (MQ=255)
                                                    aCGAGAAGAAAGCAAACTTCCCGGCGAAAGACATGAAGGTGGCTATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAtttt                                     <  1:199397/93‑1 (MQ=255)
                                                     cGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTg                                    <  2:1516796/93‑1 (MQ=255)
                                                     cGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTg                                    >  2:381119/1‑93 (MQ=255)
                                                      gTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGt                                   >  1:633851/1‑93 (MQ=255)
                                                       tGNAGAAAGCAAACTGCCCGGCNAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGtt                                  <  1:4996708/93‑1 (MQ=255)
                                                         aagaaAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTc                                <  1:5952422/93‑1 (MQ=255)
                                                         aagaaAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTc                                <  1:4027367/93‑1 (MQ=255)
                                                         aagaaAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTc                                <  1:1838008/93‑1 (MQ=255)
                                                          agaaAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCt                               <  2:4113920/93‑1 (MQ=255)
                                                           gaaAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTg                              <  1:4061441/93‑1 (MQ=255)
                                                           gaaAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTg                              <  1:1727535/93‑1 (MQ=255)
                                                           gaaAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTg                              <  2:6040115/93‑1 (MQ=255)
                                                             aaGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGAt                            >  1:2699481/1‑93 (MQ=255)
                                                              aGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATg                           <  2:5281873/93‑1 (MQ=255)
                                                              aGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTCTTTCTGATg                           >  2:2556389/1‑93 (MQ=255)
                                                               gCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGc                          <  1:4751211/93‑1 (MQ=255)
                                                                     tGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGt                    >  1:1452969/1‑93 (MQ=255)
                                                                     tGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGt                    <  1:1071462/93‑1 (MQ=255)
                                                                     tGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGt                    <  1:3346004/93‑1 (MQ=255)
                                                                      gCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGtt                   <  2:1959908/93‑1 (MQ=255)
                                                                         cGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGc                <  1:6171810/93‑1 (MQ=255)
                                                                          ggCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGcc               <  2:3215584/93‑1 (MQ=255)
                                                                          ggCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGcc               >  1:4838360/1‑93 (MQ=255)
                                                                             gAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTgg            <  1:3286596/93‑1 (MQ=255)
                                                                              aaaGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGc           >  2:4222248/1‑93 (MQ=255)
                                                                              aaaGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGc           >  1:3505558/1‑93 (MQ=255)
                                                                              aaaGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGc           >  1:6275045/1‑93 (MQ=255)
                                                                               aaGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCa          <  1:4048376/93‑1 (MQ=255)
                                                                               aaGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCa          >  1:4393171/1‑93 (MQ=255)
                                                                                aGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAg         <  2:3292217/93‑1 (MQ=255)
                                                                                  aCATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTg       <  2:54714/93‑1 (MQ=255)
                                                                                  aCATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTg       <  2:2926659/93‑1 (MQ=255)
                                                                                   cATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGa      >  1:2911644/1‑93 (MQ=255)
                                                                                   cATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGa      >  2:1177841/1‑93 (MQ=255)
                                                                                   cATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGGTGTAATAAGCGGAAAGTATTTTGGTTCTGATGCGAGGGGTCGCCTGGCCGTGa      >  2:65187/1‑93 (MQ=255)
                                                                                    aTGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGaa     <  1:5070800/93‑1 (MQ=255)
                                                                                     tGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAg    <  2:4069592/93‑1 (MQ=255)
                                                                                      gAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAgg   <  1:4601229/93‑1 (MQ=255)
                                                                                      gAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAgg   <  1:4159417/93‑1 (MQ=255)
                                                                                      gAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAgg   >  1:766587/1‑93 (MQ=255)
                                                                                          |                                                                                         
GTTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGC  >  NC_000913/3838603‑3838782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGTTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATG  >  NC_000913/3838601‑3838786
                                                                                            |                                                                                             
GCGTTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGT                                                                                              <  SRR4302533.683038/94‑1 (MQ=60)
GCGTTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGT                                                                                              <  SRR4302533.795556/94‑1 (MQ=60)
 CGTTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTG                                                                                             >  SRR4302533.2863203/1‑94 (MQ=60)
  GTTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGG                                                                                            >  SRR4302533.4799935/1‑94 (MQ=60)
  GTTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGG                                                                                            <  SRR4302533.3145395/94‑1 (MQ=60)
   TTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGC                                                                                           <  SRR4302533.1568463/94‑1 (MQ=60)
     AAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGA                                                                                         >  SRR4302533.3540944/1‑94 (MQ=60)
        CCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCA                                                                                      <  SRR4302533.660040/94‑1 (MQ=60)
        CCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCA                                                                                      <  SRR4302533.3681206/94‑1 (MQ=60)
        CCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGCCGAAAGACATGAAGGTGGCGATCA                                                                                      <  SRR4302533.3681207/94‑1 (MQ=60)
          ATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATC                                                                                    <  SRR4302533.890879/94‑1 (MQ=60)
          ATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATC                                                                                    >  SRR4302533.5313958/1‑94 (MQ=60)
          ATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATC                                                                                    >  SRR4302533.1774456/1‑94 (MQ=60)
          ATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATC                                                                                    >  SRR4302533.5467826/1‑94 (MQ=60)
            CCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCC                                                                                  <  SRR4302533.3331559/94‑1 (MQ=60)
             CACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCT                                                                                 >  SRR4302533.2944565/1‑94 (MQ=60)
             CACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCT                                                                                 <  SRR4302533.1228415/94‑1 (MQ=60)
              ACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTG                                                                                >  SRR4302533.100101/1‑94 (MQ=60)
               CGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGC                                                                               >  SRR4302533.553980/1‑94 (MQ=60)
               CGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGC                                                                               >  SRR4302533.1766197/1‑94 (MQ=60)
                  CGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCAT                                                                            <  SRR4302533.6173333/94‑1 (MQ=60)
                  CGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCAT                                                                            >  SRR4302533.4501208/1‑94 (MQ=60)
                   GAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATC                                                                           <  SRR4302533.5948078/94‑1 (MQ=60)
                   GAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATC                                                                           <  SRR4302533.214955/94‑1 (MQ=60)
                    AATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCA                                                                          >  SRR4302533.6319999/1‑94 (MQ=60)
                    AATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCA                                                                          >  SRR4302533.2894647/1‑94 (MQ=60)
                     ATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCAC                                                                         <  SRR4302533.6029427/94‑1 (MQ=60)
                     ATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCAC                                                                         <  SRR4302533.933355/94‑1 (MQ=60)
                       CCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACAC                                                                       >  SRR4302533.4437674/1‑94 (MQ=60)
                        CCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACC                                                                      <  SRR4302533.4385275/94‑1 (MQ=60)
                         CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCC                                                                     >  SRR4302533.3834473/1‑94 (MQ=60)
                         CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCC                                                                     >  SRR4302533.2594350/1‑94 (MQ=60)
                         CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCC                                                                     <  SRR4302533.1391981/94‑1 (MQ=60)
                         CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCC                                                                     <  SRR4302533.1121969/94‑1 (MQ=60)
                          GCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCG                                                                    >  SRR4302533.996766/1‑94 (MQ=60)
                           CCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGG                                                                   <  SRR4302533.2666438/94‑1 (MQ=60)
                           CCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGG                                                                   >  SRR4302533.1087152/1‑94 (MQ=60)
                            CAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGC                                                                  >  SRR4302533.4330699/1‑94 (MQ=60)
                            CAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGA                                                                  >  SRR4302533.449847/1‑94 (MQ=60)
                            CAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGA                                                                  >  SRR4302533.1951852/1‑94 (MQ=60)
                            CAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGA                                                                  >  SRR4302533.667258/1‑94 (MQ=60)
                             AGGTTCATATACGCCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCCAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGAC                                                                 <  SRR4302533.4471642/94‑1 (MQ=60)
                             AGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGAC                                                                 <  SRR4302533.5300427/94‑1 (MQ=60)
                              GGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACG                                                                <  SRR4302533.1808499/94‑1 (MQ=60)
                              GGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGCGGCGATCATCCCTGCCATCACACCCGGACG                                                                >  SRR4302533.4747670/1‑94 (MQ=60)
                               GTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGT                                                               >  SRR4302533.175547/1‑94 (MQ=60)
                               GTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGT                                                               >  SRR4302533.5530552/1‑94 (MQ=60)
                                TTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTT                                                              <  SRR4302533.2142046/94‑1 (MQ=60)
                                 TCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTG                                                             <  SRR4302533.1004893/94‑1 (MQ=60)
                                 TCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTG                                                             <  SRR4302533.213360/94‑1 (MQ=60)
                                 TCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCAGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTG                                                             <  SRR4302533.3635058/94‑1 (MQ=60)
                                  CATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGT                                                            >  SRR4302533.4169552/1‑94 (MQ=60)
                                  CATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGT                                                            <  SRR4302533.417953/94‑1 (MQ=60)
                                  CATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGT                                                            <  SRR4302533.5445071/94‑1 (MQ=60)
                                   ATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTA                                                           >  SRR4302533.405947/1‑94 (MQ=60)
                                   ATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTA                                                           >  SRR4302533.1701326/1‑94 (MQ=60)
                                    TATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAA                                                          <  SRR4302533.3806392/94‑1 (MQ=60)
                                    TATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAA                                                          <  SRR4302533.5858573/94‑1 (MQ=60)
                                    TATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAA                                                          <  SRR4302533.5644709/94‑1 (MQ=60)
                                     ATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAAT                                                         <  SRR4302533.258513/94‑1 (MQ=60)
                                     ATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAAT                                                         <  SRR4302533.3921306/94‑1 (MQ=60)
                                     ATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAAT                                                         <  SRR4302533.617996/94‑1 (MQ=60)
                                     ATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAAT                                                         <  SRR4302533.617997/94‑1 (MQ=60)
                                       ACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAA                                                       <  SRR4302533.1109991/94‑1 (MQ=60)
                                       ACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGGTGTAATAA                                                       >  SRR4302533.2193317/1‑94 (MQ=60)
                                        CACCGGGCGAATATACGTGAAGAAAGCAACCTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACCCCCGGACGTTGTAATAAG                                                      <  SRR4302533.1684136/94‑1 (MQ=60)
                                        CACCGGGCGAATATACGTGAAGAAAGCAACCTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACCCCCGGACGTTGTAATAAG                                                      <  SRR4302533.481701/94‑1 (MQ=60)
                                        CACCGGGCGAATATACGTGAAGAAAGCAACCTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAG                                                      <  SRR4302533.1383429/94‑1 (MQ=60)
                                        CACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAG                                                      <  SRR4302533.3574597/94‑1 (MQ=60)
                                         CCCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGC                                                     <  SRR4302533.1629945/94‑1 (MQ=60)
                                          CCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCG                                                    <  SRR4302533.3433980/94‑1 (MQ=60)
                                             GGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAA                                                 <  SRR4302533.3362683/94‑1 (MQ=60)
                                             GGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAA                                                 <  SRR4302533.4699518/94‑1 (MQ=60)
                                             GGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAA                                                 <  SRR4302533.3122146/94‑1 (MQ=60)
                                             GGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAA                                                 <  SRR4302533.407631/94‑1 (MQ=60)
                                               CGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAG                                               <  SRR4302533.2481319/94‑1 (MQ=60)
                                                GAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGT                                              >  SRR4302533.5057583/1‑94 (MQ=60)
                                                GAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGT                                              >  SRR4302533.1827427/1‑94 (MQ=60)
                                                GAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGT                                              >  SRR4302533.1042254/1‑94 (MQ=60)
                                                 AATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTA                                             >  SRR4302533.3597197/1‑94 (MQ=60)
                                                  ATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAT                                            <  SRR4302533.5120279/94‑1 (MQ=60)
                                                  ATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAT                                            >  SRR4302533.4930366/1‑94 (MQ=60)
                                                  ATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTAT                                            >  SRR4302533.3757368/1‑94 (MQ=60)
                                                   TATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATT                                           >  SRR4302533.2460688/1‑94 (MQ=60)
                                                   AATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATT                                           <  SRR4302533.3613607/94‑1 (MQ=60)
                                                    ATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTT                                          >  SRR4302533.2562187/1‑94 (MQ=60)
                                                    ATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTT                                          <  SRR4302533.362999/94‑1 (MQ=60)
                                                    ATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGCAATAAGCGGAAAGTATTT                                          >  SRR4302533.1165295/1‑94 (MQ=60)
                                                     TACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTT                                         <  SRR4302533.4756560/94‑1 (MQ=60)
                                                     TACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTT                                         <  SRR4302533.6247193/94‑1 (MQ=60)
                                                     TACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTT                                         <  SRR4302533.2478439/94‑1 (MQ=60)
                                                      ACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTG                                        <  SRR4302533.67016/94‑1 (MQ=60)
                                                      ACGAGAAGAAAGCAAACTTCCCGGCGAAAGACATGAAGGTGGCTATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTG                                        <  SRR4302533.200658/94‑1 (MQ=60)
                                                       CGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGT                                       >  SRR4302533.637579/1‑94 (MQ=60)
                                                       CGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGT                                       <  SRR4302533.5423720/94‑1 (MQ=60)
                                                        GTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTT                                      >  SRR4302533.5584032/1‑94 (MQ=60)
                                                        GTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTT                                      <  SRR4302533.2042876/94‑1 (MQ=60)
                                                         TGNAGAAAGCAAACTGCCCGGCNAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTT                                     <  SRR4302533.5027003/94‑1 (MQ=60)
                                                         GGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTT                                     <  SRR4302533.3453154/94‑1 (MQ=60)
                                                          GAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTC                                    <  SRR4302533.2467439/94‑1 (MQ=60)
                                                          GAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTC                                    <  SRR4302533.5455531/94‑1 (MQ=60)
                                                          GAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTC                                    >  SRR4302533.708672/1‑94 (MQ=60)
                                                           AAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCT                                   <  SRR4302533.5988428/94‑1 (MQ=60)
                                                           AAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCT                                   >  SRR4302533.4675560/1‑94 (MQ=60)
                                                           AAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCT                                   <  SRR4302533.1849217/94‑1 (MQ=60)
                                                           AAGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCT                                   <  SRR4302533.4051884/94‑1 (MQ=60)
                                                            AGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTG                                  <  SRR4302533.215114/94‑1 (MQ=60)
                                                            AGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTG                                  <  SRR4302533.3892278/94‑1 (MQ=60)
                                                            AGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTG                                  <  SRR4302533.3952965/94‑1 (MQ=60)
                                                            AGAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTG                                  <  SRR4302533.2141611/94‑1 (MQ=60)
                                                             GAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGA                                 <  SRR4302533.4086164/94‑1 (MQ=60)
                                                             GAAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGA                                 <  SRR4302533.1738017/94‑1 (MQ=60)
                                                              AAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGAT                                <  SRR4302533.982128/94‑1 (MQ=60)
                                                              AAAGCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGAT                                >  SRR4302533.2716041/1‑94 (MQ=60)
                                                                 GCAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCG                             <  SRR4302533.4780017/94‑1 (MQ=60)
                                                                  CAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGA                            <  SRR4302533.2566148/94‑1 (MQ=60)
                                                                  CAAACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGA                            >  SRR4302533.2129858/1‑94 (MQ=60)
                                                                    AACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCTGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGG                          <  SRR4302533.594577/94‑1 (MQ=60)
                                                                    AACTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGG                          <  SRR4302533.1930614/94‑1 (MQ=60)
                                                                      CTGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGT                        >  SRR4302533.1461734/1‑94 (MQ=60)
                                                                       TGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACGCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTT                       >  SRR4302533.3184285/1‑94 (MQ=60)
                                                                       TGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTT                       <  SRR4302533.4076980/94‑1 (MQ=60)
                                                                       TGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTT                       <  SRR4302533.1077776/94‑1 (MQ=60)
                                                                       TGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTT                       <  SRR4302533.1046104/94‑1 (MQ=60)
                                                                       TGCCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTT                       <  SRR4302533.3366676/94‑1 (MQ=60)
                                                                         CCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCG                     <  SRR4302533.5854398/94‑1 (MQ=60)
                                                                         CCCGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCG                     >  SRR4302533.2525075/1‑94 (MQ=60)
                                                                           CGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCC                   >  SRR4302533.4867686/1‑94 (MQ=60)
                                                                           CGGCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCC                   <  SRR4302533.6208898/94‑1 (MQ=60)
                                                                             GCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTG                 <  SRR4302533.5660531/94‑1 (MQ=60)
                                                                             GCGAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTG                 <  SRR4302533.5154270/94‑1 (MQ=60)
                                                                               GAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGC               >  SRR4302533.3527167/1‑94 (MQ=60)
                                                                               GAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGC               >  SRR4302533.4056732/1‑94 (MQ=60)
                                                                               GAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGC               <  SRR4302533.3306885/94‑1 (MQ=60)
                                                                               GAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGC               >  SRR4302533.6312519/1‑94 (MQ=60)
                                                                               GAAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGC               >  SRR4302533.6213684/1‑94 (MQ=60)
                                                                                AAAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCA              >  SRR4302533.4419692/1‑94 (MQ=60)
                                                                                 AAGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAG             <  SRR4302533.4073030/94‑1 (MQ=60)
                                                                                  AGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATACGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGT            <  SRR4302533.4468036/94‑1 (MQ=60)
                                                                                  AGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGT            <  SRR4302533.5990254/94‑1 (MQ=60)
                                                                                  AGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGT            <  SRR4302533.3221712/94‑1 (MQ=60)
                                                                                  AGACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGT            <  SRR4302533.500004/94‑1 (MQ=60)
                                                                                   GACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTG           <  SRR4302533.1560380/94‑1 (MQ=60)
                                                                                   GACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTG           <  SRR4302533.729896/94‑1 (MQ=60)
                                                                                   GACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTG           >  SRR4302533.1075595/1‑94 (MQ=60)
                                                                                   GACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTG           <  SRR4302533.2680903/94‑1 (MQ=60)
                                                                                   GACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTCGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTG           <  SRR4302533.4657694/94‑1 (MQ=60)
                                                                                    ACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGA          >  SRR4302533.2929515/1‑94 (MQ=60)
                                                                                    ACATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGA          <  SRR4302533.1388451/94‑1 (MQ=60)
                                                                                      ATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAG        <  SRR4302533.399303/94‑1 (MQ=60)
                                                                                      ATGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAG        <  SRR4302533.5101453/94‑1 (MQ=60)
                                                                                       TGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGG       >  SRR4302533.771111/1‑94 (MQ=60)
                                                                                       TGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGG       <  SRR4302533.5056197/94‑1 (MQ=60)
                                                                                       TGAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGG       >  SRR4302533.2164641/1‑94 (MQ=60)
                                                                                        GAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGC      <  SRR4302533.4184624/94‑1 (MQ=60)
                                                                                        GAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGC      >  SRR4302533.6320947/1‑94 (MQ=60)
                                                                                        GAAGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGC      <  SRR4302533.4629105/94‑1 (MQ=60)
                                                                                          AGGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTACTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAA    <  SRR4302533.973769/94‑1 (MQ=60)
                                                                                           GGTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAAT   <  SRR4302533.1883260/94‑1 (MQ=60)
                                                                                            GTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATG  <  SRR4302533.2521726/94‑1 (MQ=60)
                                                                                            GTGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATG  <  SRR4302533.4661482/94‑1 (MQ=60)
                                                                                            |                                                                                             
GCGTTAAGCCATCCACGCCGAATCCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATG  >  NC_000913/3838601‑3838786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑