Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,845,193	G→A	T354T (ACC→ACT)	uhpC ←	UhpC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,845,193	0	G	A	100.0%	1293.8 / NA	352	T354T (ACC→ACT)	uhpC	UhpC
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (213/139); total (213/139)

Only 100 of 362 total aligned reads displayed.

CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT  >  NC_000913/3845103‑3845282

 cccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTg                                                                                        >  2:1245872/1‑93 (MQ=255)

  ccgccgccgCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTga                                                                                       <  2:2065442/93‑1 (MQ=255)

  ccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTga                                                                                       >  2:7359607/1‑93 (MQ=255)

   cGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTgaa                                                                                      >  1:1226155/1‑93 (MQ=255)

    gTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGAGGGCCAAAGACAAAAAAACCAATAGTgaag                                                                                     >  1:7294984/1‑93 (MQ=255)

     tCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTgaaga                                                                                    <  2:3296482/93‑1 (MQ=255)

     tCGCCGCCCCTGCCGCCTCTTTGCGGGAACACTCTGCCGCCGCCATACCGATCAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTgaaga                                                                                    >  1:9124766/1‑93 (MQ=255)

       gccgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGaagaag                                                                                  <  1:4424029/93‑1 (MQ=255)

       ccctccccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGaagaag                                                                                  <  2:1702799/89‑1 (MQ=255)

         cgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCa                                                                                <  2:9814543/93‑1 (MQ=255)

         cgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCa                                                                                <  1:5610937/93‑1 (MQ=255)

          gccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAg                                                                               >  1:7716809/1‑93 (MQ=255)

          gccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAg                                                                               >  1:2151838/1‑93 (MQ=255)

          gccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGACGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAg                                                                               >  1:1015539/1‑93 (MQ=255)

          cccccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAg                                                                               <  2:6264309/92‑1 (MQ=255)

           ccccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCGAAGACAAAAAAACCAATAGTGAAGAAGCAgg                                                                              >  1:2880431/1‑93 (MQ=255)

           ccccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAgg                                                                              >  2:2592182/1‑93 (MQ=255)

            cccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGt                                                                             <  2:659055/93‑1 (MQ=255)

             ccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGtt                                                                            >  2:6765444/1‑93 (MQ=255)

              cTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGACGAAGCAGGTTg                                                                           >  1:8897388/1‑93 (MQ=255)

              cTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTg                                                                           >  2:500910/1‑93 (MQ=255)

               tGCCGCCTCTTTGTGGGGACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGc                                                                          >  1:894738/1‑93 (MQ=255)

                gccgccACTTGGTGGGAACGCTCTGCCGCGGCCATACCGATTAACATCTGTGGGCCAAAGTCAAAAAAGCCAATAGTGAAGAAGCAGGTTGcc                                                                         <  2:1141245/93‑1 (MQ=255)

                   gccTCTTTGTGGGAACACTCTGCCGCCGCCTTACCGATTAAAATCTGTAGGCCAAAGACAAAAAAACCAATAGTAAAGAAGCAGGTTGCCtca                                                                      >  1:247976/1‑91 (MQ=255)

                   gccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGc                                                                      >  1:4539560/1‑93 (MQ=255)

                    ccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCa                                                                     <  2:4191353/93‑1 (MQ=255)

                    ccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCa                                                                     >  2:4362196/1‑93 (MQ=255)

                    ccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCa                                                                     >  1:1489204/1‑93 (MQ=255)

                     ctctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCAt                                                                    <  1:932975/93‑1 (MQ=255)

                      tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc                                                                   >  1:3702179/1‑93 (MQ=255)

                      tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc                                                                   >  1:6609770/1‑93 (MQ=255)

                      tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc                                                                   >  2:4535854/1‑93 (MQ=255)

                      tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc                                                                   >  1:7394731/1‑93 (MQ=255)

                      tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc                                                                   >  2:9366156/1‑93 (MQ=255)

                       ctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCa                                                                  <  2:2341615/93‑1 (MQ=255)

                       ctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCa                                                                  <  2:6714724/93‑1 (MQ=255)

                        tttGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCAc                                                                 >  1:3530214/1‑93 (MQ=255)

                        tttGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCAc                                                                 <  2:8285281/93‑1 (MQ=255)

                        tttGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCAc                                                                 >  1:478239/1‑93 (MQ=255)

                            tgGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAg                                                             >  2:8900264/1‑93 (MQ=255)

                            tgGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGAAGGTTGCCTGAATCACGTAg                                                             >  2:2679707/1‑93 (MQ=255)

                              ggAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCt                                                           >  1:3760630/1‑93 (MQ=255)

                              ggAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCt                                                           <  2:8470473/93‑1 (MQ=255)

                                 acacTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGc                                                        >  1:538564/1‑93 (MQ=255)

                                 acacTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGc                                                        >  2:6059479/1‑93 (MQ=255)

                                  cacTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACAAAAAGTAAAGAAGCAGGTTGCCTCCATCACGTAGAGGGCa                                                       >  2:3667369/1‑93 (MQ=255)

                                    ctctGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCaaa                                                     <  1:9822653/93‑1 (MQ=255)

                                         ccgccgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCa                                                >  1:6850184/1‑93 (MQ=255)

                                         ccgccgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCa                                                <  2:7077978/93‑1 (MQ=255)

                                         ccgccgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCa                                                <  1:763896/93‑1 (MQ=255)

                                         ccgccgccATACCGATGAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCa                                                <  2:770205/93‑1 (MQ=255)

                                          cgccgccATACCGATTAACATCTGTGGTCAAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCAt                                               <  1:839595/93‑1 (MQ=255)

                                           gccgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATc                                              >  2:5734913/1‑93 (MQ=255)

                                           cccgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATc                                              <  2:944282/92‑1 (MQ=255)

                                            ccgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAATCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCa                                             <  1:2247696/93‑1 (MQ=255)

                                             cgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAg                                            >  2:6370751/1‑93 (MQ=255)

                                              gccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGc                                           >  2:7269087/1‑93 (MQ=255)

                                              gccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGc                                           >  1:1929425/1‑93 (MQ=255)

                                                cATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCca                                         >  1:6928302/1‑93 (MQ=255)

                                                  tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca                                       <  1:3889039/93‑1 (MQ=255)

                                                  tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca                                       <  1:824019/93‑1 (MQ=255)

                                                  tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca                                       >  2:8085518/1‑93 (MQ=255)

                                                  tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca                                       >  2:9194900/1‑93 (MQ=255)

                                                  tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca                                       >  1:9040766/1‑93 (MQ=255)

                                                   aCCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAg                                      >  2:8521575/1‑93 (MQ=255)

                                                   aCCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAg                                      >  1:31689/1‑93 (MQ=255)

                                                   aCCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAg                                      >  2:5061710/1‑93 (MQ=255)

                                                    ccGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg                                     <  2:8842506/93‑1 (MQ=255)

                                                    ccGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg                                     >  1:2380257/1‑93 (MQ=255)

                                                    ccGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg                                     <  1:9447952/93‑1 (MQ=255)

                                                     cGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAggg                                    >  1:1770440/1‑93 (MQ=255)

                                                     cGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAggg                                    >  1:4740147/1‑93 (MQ=255)

                                                     cGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAggg                                    <  2:197500/93‑1 (MQ=255)

                                                      gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgggg                                   >  2:3895317/1‑92 (MQ=255)

                                                      gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa                                   <  1:5474985/93‑1 (MQ=255)

                                                       aTTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAg                                  >  1:7939195/1‑93 (MQ=255)

                                                       aTTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAg                                  >  1:8703762/1‑93 (MQ=255)

                                                       aTTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAg                                  >  2:7975590/1‑93 (MQ=255)

                                                        ttAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGc                                 >  1:5597087/1‑93 (MQ=255)

                                                           aCATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGa                              >  2:10043318/1‑93 (MQ=255)

                                                            cATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGTAGCCGAc                             >  1:3265350/1‑93 (MQ=255)

                                                                tgtgGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGaa                         >  2:7531090/1‑93 (MQ=255)

                                                                   gggCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGc                      <  2:4698930/93‑1 (MQ=255)

                                                                   gggCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGc                      <  1:4102842/93‑1 (MQ=255)

                                                                       cAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaaaa                  >  1:9669086/1‑93 (MQ=255)

                                                                        aaaGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAt                 <  2:1267077/93‑1 (MQ=255)

                                                                        aaaGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAt                 <  2:5548678/93‑1 (MQ=255)

                                                                          aGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTc               >  1:5337361/1‑93 (MQ=255)

                                                                          aGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTc               >  1:8598065/1‑93 (MQ=255)

                                                                           gACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTcc              <  1:7163209/93‑1 (MQ=255)

                                                                              aaaaaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggc           <  2:3118839/93‑1 (MQ=255)

                                                                                aaaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggcgg         <  1:3828614/93‑1 (MQ=255)

                                                                                aaaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggcgg         <  2:3019195/93‑1 (MQ=255)

                                                                                 aaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGACGACTGAAAGCAACATTCCggcggc        >  2:3781772/1‑93 (MQ=255)

                                                                                  aaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGgcggcg       <  1:6335139/93‑1 (MQ=255)

                                                                                    aCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTACGGCGGCGaa     >  1:5125040/1‑93 (MQ=255)

                                                                                      cAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaaa   <  2:5841980/93‑1 (MQ=255)

                                                                                       aaTAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAACATTCCGGCGGCGAAAAt  >  2:1408832/1‑93 (MQ=255)

                                                                                       aaTAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAt  >  1:5885672/1‑93 (MQ=255)

                                                                                       aaTAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAt  >  2:5212244/1‑93 (MQ=255)

CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT  >  NC_000913/3845103‑3845282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 202 total aligned reads displayed.

AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA  >  NC_000913/3845100‑3845286

AACCCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATA                                                                                               <  SRR4302540.7411869/94‑1 (MQ=60)

AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATA                                                                                               >  SRR4302540.6225831/1‑94 (MQ=60)

AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATA                                                                                               <  SRR4302540.6911695/94‑1 (MQ=60)

 AACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAG                                                                                              <  SRR4302540.2603323/94‑1 (MQ=60)

 AACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAG                                                                                              >  SRR4302540.9536362/1‑94 (MQ=60)

 AACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAG                                                                                              <  SRR4302540.7403445/94‑1 (MQ=60)

 AACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAG                                                                                              <  SRR4302540.7173366/94‑1 (MQ=60)

 AACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAG                                                                                              >  SRR4302540.1711647/1‑94 (MQ=60)

  ACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGT                                                                                             <  SRR4302540.2035658/94‑1 (MQ=60)

   CCCCGTCGCCGCCCCTGCCTCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTG                                                                                            <  SRR4302540.8905359/94‑1 (MQ=60)

   CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTG                                                                                            <  SRR4302540.505462/94‑1 (MQ=60)

    CCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGA                                                                                           >  SRR4302540.698538/1‑94 (MQ=60)

     CCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAA                                                                                          <  SRR4302540.9169279/94‑1 (MQ=60)

     CCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAA                                                                                          >  SRR4302540.5562431/1‑94 (MQ=60)

     CCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAA                                                                                          >  SRR4302540.1238687/1‑94 (MQ=60)

      CGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAG                                                                                         <  SRR4302540.770656/94‑1 (MQ=60)

      CGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAG                                                                                         >  SRR4302540.6092872/1‑94 (MQ=60)

      CGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAG                                                                                         >  SRR4302540.9063233/1‑94 (MQ=60)

      CGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGAGGGCCAAAGACAAAAAAACCAATAGTGAAG                                                                                         >  SRR4302540.7376401/1‑94 (MQ=60)

      CGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGAGGGCCAAAGACAAAAAAACCAATAGTGAAG                                                                                         >  SRR4302540.7376400/1‑94 (MQ=60)

       GTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGA                                                                                        >  SRR4302540.1192041/1‑94 (MQ=60)

       GTCGCCGCCCCTGCCGCCTCTTTGCGGGAACACTCTGCCGCCGCCATACCGATCAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGA                                                                                        >  SRR4302540.9234444/1‑94 (MQ=60)

        TCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAA                                                                                       <  SRR4302540.824683/94‑1 (MQ=60)

        TCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAA                                                                                       <  SRR4302540.40087/94‑1 (MQ=60)

         CGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAG                                                                                      <  SRR4302540.2196701/94‑1 (MQ=60)

         CGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAG                                                                                      >  SRR4302540.2350882/1‑94 (MQ=60)

          GCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGC                                                                                     >  SRR4302540.5430081/1‑94 (MQ=60)

          GCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGC                                                                                     <  SRR4302540.4471961/94‑1 (MQ=60)

           CCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCA                                                                                    <  SRR4302540.7347180/94‑1 (MQ=60)

            CGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAG                                                                                   <  SRR4302540.372291/94‑1 (MQ=60)

            CGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAG                                                                                   <  SRR4302540.5672660/94‑1 (MQ=60)

            CGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAG                                                                                   <  SRR4302540.5672662/94‑1 (MQ=60)

            CGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAG                                                                                   >  SRR4302540.2174981/1‑94 (MQ=60)

            CGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAG                                                                                   >  SRR4302540.762145/1‑94 (MQ=60)

            CGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAG                                                                                   >  SRR4302540.7805955/1‑94 (MQ=60)

            CGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAG                                                                                   >  SRR4302540.7805956/1‑94 (MQ=60)

            CGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGACGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAG                                                                                   >  SRR4302540.1025832/1‑94 (MQ=60)

            CGCCCCTGCCGCCTCTTTGTGGAAACACTCTGCAGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAG                                                                                   <  SRR4302540.9076338/94‑1 (MQ=60)

             GCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCTAAGACAAAAAAACCAATAGTGAAGAAACAGG                                                                                  >  SRR4302540.5659428/1‑94 (MQ=60)

             GCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCGAAGACAAAAAAACCAATAGTGAAGAAGCAGG                                                                                  >  SRR4302540.2911765/1‑94 (MQ=60)

             GCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGG                                                                                  >  SRR4302540.5459691/1‑94 (MQ=60)

             GCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGG                                                                                  >  SRR4302540.4649986/1‑94 (MQ=60)

             GCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGG                                                                                  <  SRR4302540.9901675/94‑1 (MQ=60)

              gcgctgctGCCTCTTGGTGGGAACCCTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGT                                                                                 <  SRR4302540.8552822/86‑1 (MQ=60)

              CCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGT                                                                                 <  SRR4302540.4712571/94‑1 (MQ=60)

              CCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGT                                                                                 >  SRR4302540.1029122/1‑94 (MQ=60)

               CCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTT                                                                                >  SRR4302540.2844788/1‑94 (MQ=60)

               CCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTT                                                                                <  SRR4302540.1808512/94‑1 (MQ=60)

                CCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGACGAAGCAGGTTG                                                                               >  SRR4302540.9000383/1‑94 (MQ=60)

                CCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTG                                                                               >  SRR4302540.9759449/1‑94 (MQ=60)

                 CTGCCGCCTCTTTGTGGGGACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACTCATAGTGAAGAAGCAGGTTGC                                                                              >  SRR4302540.904245/1‑94 (MQ=60)

                 CTGCCGCCTCTTTGTGGGGACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGC                                                                              >  SRR4302540.904246/1‑94 (MQ=60)

                 CTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGC                                                                              >  SRR4302540.6889878/1‑94 (MQ=60)

                 CTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGC                                                                              >  SRR4302540.8709639/1‑94 (MQ=60)

                 CTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGC                                                                              <  SRR4302540.2562714/94‑1 (MQ=60)

                 CTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGC                                                                              <  SRR4302540.3889271/94‑1 (MQ=60)

                  TGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCC                                                                             >  SRR4302540.3798043/1‑94 (MQ=60)

                  TGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCC                                                                             <  SRR4302540.877552/94‑1 (MQ=60)

                  TGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCC                                                                             <  SRR4302540.9989638/94‑1 (MQ=60)

                    CCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTG                                                                           <  SRR4302540.3477606/94‑1 (MQ=60)

                     CGCCTCTTTGTGGGAACACTCTGCCGCCGCCTTACCGATTAAAATCTGTAGGCCAAAGACAAAAAAACCAATAGTAAAGAAGCAGGTTGCCTca                                                                          >  SRR4302540.250374/1‑92 (MQ=60)

                     CGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGC                                                                          >  SRR4302540.4588691/1‑94 (MQ=60)

                     CGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGC                                                                          >  SRR4302540.4460185/1‑94 (MQ=60)

                      GCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCA                                                                         >  SRR4302540.1505572/1‑94 (MQ=60)

                      GCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCA                                                                         >  SRR4302540.2162231/1‑94 (MQ=60)

                       CCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCAT                                                                        <  SRR4302540.6544089/94‑1 (MQ=60)

                       CCTCGTTGTGGGAACACTCTCCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCAT                                                                        <  SRR4302540.835438/94‑1 (MQ=60)

                        CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC                                                                       >  SRR4302540.3421678/1‑94 (MQ=60)

                        CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC                                                                       >  SRR4302540.6682959/1‑94 (MQ=60)

                        CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC                                                                       >  SRR4302540.6765970/1‑94 (MQ=60)

                        CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC                                                                       >  SRR4302540.7477124/1‑94 (MQ=60)

                        CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC                                                                       >  SRR4302540.1960052/1‑94 (MQ=60)

                        CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC                                                                       >  SRR4302540.3742593/1‑94 (MQ=60)

                        CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC                                                                       <  SRR4302540.942768/94‑1 (MQ=60)

                         TCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCA                                                                      <  SRR4302540.8472739/94‑1 (MQ=60)

                         CCTTTGTGCGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCA                                                                      <  SRR4302540.3747971/94‑1 (MQ=60)

                          CTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCAC                                                                     >  SRR4302540.3568729/1‑94 (MQ=60)

                          CTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCAC                                                                     >  SRR4302540.483360/1‑94 (MQ=60)

                            TTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGT                                                                   >  SRR4302540.3095829/1‑94 (MQ=60)

                             TGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTA                                                                  <  SRR4302540.7958396/94‑1 (MQ=60)

                              GTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAG                                                                 >  SRR4302540.925284/1‑94 (MQ=60)

                              GTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAG                                                                 >  SRR4302540.1890335/1‑94 (MQ=60)

                              GTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAG                                                                 <  SRR4302540.3236423/94‑1 (MQ=60)

                                GGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCT                                                               <  SRR4302540.3818627/94‑1 (MQ=60)

                                GGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCT                                                               >  SRR4302540.3801657/1‑94 (MQ=60)

                                GGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCT                                                               >  SRR4302540.3801656/1‑94 (MQ=60)

                                 GGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTG                                                              >  SRR4302540.9500469/1‑94 (MQ=60)

                                  GAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGG                                                             >  SRR4302540.8047126/1‑94 (MQ=60)

                                   AACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGC                                                            >  SRR4302540.4437209/1‑94 (MQ=60)

                                   AACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGC                                                            >  SRR4302540.544389/1‑94 (MQ=60)

                                    ACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCA                                                           >  SRR4302540.9920453/1‑94 (MQ=60)

                                      ACTCTGCCGCCGCCATACCGATTAACATCTGCGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATaaagtagcgggaaaa                                                         >  SRR4302540.4367385/1‑79 (MQ=60)

                                       CTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAT                                                        <  SRR4302540.9937571/94‑1 (MQ=60)

                                       CTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAG                                                        >  SRR4302540.3114022/1‑94 (MQ=60)

                                        ccttgCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATG                                                       <  SRR4302540.3458734/89‑1 (MQ=60)

                                          TGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGC                                                     >  SRR4302540.236318/1‑94 (MQ=60)

                                           GCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCA                                                    >  SRR4302540.6926073/1‑94 (MQ=60)

                                            CCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCAT                                                   <  SRR4302540.772029/94‑1 (MQ=60)

                                            CCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCAT                                                   <  SRR4302540.9243956/94‑1 (MQ=60)

                                             CGCCGCCATACCGATTAACATCTGTGGTCAAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATC                                                  <  SRR4302540.848500/94‑1 (MQ=60)

                                             CGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATC                                                  >  SRR4302540.482181/1‑94 (MQ=60)

                                              GCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCA                                                 <  SRR4302540.9984349/94‑1 (MQ=60)

                                              GCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCA                                                 <  SRR4302540.9744044/94‑1 (MQ=60)

                                              GCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCA                                                 >  SRR4302540.2282155/1‑94 (MQ=60)

                                               CCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAATCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAG                                                <  SRR4302540.2271839/94‑1 (MQ=60)

                                               CCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAG                                                <  SRR4302540.1814041/94‑1 (MQ=60)

                                               CCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAG                                                <  SRR4302540.8623125/94‑1 (MQ=60)

                                                CGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGC                                               >  SRR4302540.3573398/1‑94 (MQ=60)

                                                CGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGC                                               >  SRR4302540.1950452/1‑94 (MQ=60)

                                                CGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGC                                               >  SRR4302540.4558776/1‑94 (MQ=60)

                                                CGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGC                                               >  SRR4302540.6464504/1‑94 (MQ=60)

                                                CGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGC                                               >  SRR4302540.1347558/1‑94 (MQ=60)

                                                  CCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCA                                             >  SRR4302540.2498441/1‑94 (MQ=60)

                                                  CCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCA                                             <  SRR4302540.7011662/94‑1 (MQ=60)

                                                  CCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCA                                             >  SRR4302540.7005401/1‑94 (MQ=60)

                                                   CATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCAC                                            >  SRR4302540.3922637/1‑94 (MQ=60)

                                                    ATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCCCGTAGCTGGCAAATGGCATGAGCCACA                                           >  SRR4302540.5182946/1‑94 (MQ=60)

                                                    ATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACA                                           >  SRR4302540.7793996/1‑94 (MQ=60)

                                                    ATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACA                                           >  SRR4302540.9149286/1‑94 (MQ=60)

                                                    ATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACA                                           >  SRR4302540.5879504/1‑94 (MQ=60)

                                                    ATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGACTGCATCACGTAGCTGGCAAATGGCATCAGCCACA                                           >  SRR4302540.1782832/1‑94 (MQ=60)

                                                     TACCGCTTAACATCTGTGAGCCAAAGACAAAAAGACCAATAGTGAAGAAGCAGGTTGCCTGCCTCACGTAGCTGGCAAATGGCATCAGCCACAG                                          <  SRR4302540.7362155/94‑1 (MQ=60)

                                                     TACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAG                                          <  SRR4302540.9196052/94‑1 (MQ=60)

                                                     TACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAG                                          >  SRR4302540.32026/1‑94 (MQ=60)

                                                     TACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAG                                          <  SRR4302540.832779/94‑1 (MQ=60)

                                                     TACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAG                                          <  SRR4302540.3931267/94‑1 (MQ=60)

                                                      ACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGG                                         >  SRR4302540.2405903/1‑94 (MQ=60)

                                                      ACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGG                                         >  SRR4302540.2405904/1‑94 (MQ=60)

                                                       CCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGG                                        >  SRR4302540.8248567/1‑94 (MQ=60)

                                                       CCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGG                                        >  SRR4302540.1789650/1‑94 (MQ=60)

                                                       CCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGG                                        >  SRR4302540.4790733/1‑94 (MQ=60)

                                                       CCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGG                                        <  SRR4302540.9560110/94‑1 (MQ=60)

                                                        CGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGA                                       >  SRR4302540.5462114/1‑94 (MQ=60)

                                                        CGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATAAGCCACAGGGA                                       >  SRR4302540.5417480/1‑94 (MQ=60)

                                                         GATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG                                      <  SRR4302540.5535248/94‑1 (MQ=60)

                                                         GATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG                                      >  SRR4302540.8883468/1‑94 (MQ=60)

                                                         GATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG                                      >  SRR4302540.8804793/1‑94 (MQ=60)

                                                         GATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG                                      >  SRR4302540.8031722/1‑94 (MQ=60)

                                                          ATTGACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGC                                     >  SRR4302540.5177121/1‑94 (MQ=60)

                                                          ATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGCAGCTGGCAAATGGCATCAGCCACAGGGAGC                                     >  SRR4302540.1483708/1‑94 (MQ=60)

                                                           ATAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCC                                    <  SRR4302540.8553540/94‑1 (MQ=60)

                                                              ACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGTAGCCGAC                                 >  SRR4302540.3300975/1‑94 (MQ=60)

                                                              ACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGAC                                 >  SRR4302540.3300976/1‑94 (MQ=60)

                                                              ACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATAACGTAGCTGGCAAATGGCATCAGCAACAGGGAGCCGAG                                 >  SRR4302540.166692/1‑94 (MQ=60)

                                                               CATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACT                                >  SRR4302540.901413/1‑94 (MQ=60)

                                                                gcgctTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTG                               <  SRR4302540.7224166/89‑1 (MQ=60)

                                                                ATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTG                               >  SRR4302540.954056/1‑94 (MQ=60)

                                                                ATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTG                               >  SRR4302540.7827002/1‑94 (MQ=60)

                                                                  CTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAA                             >  SRR4302540.9037521/1‑94 (MQ=60)

                                                                   TGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAA                            <  SRR4302540.367338/94‑1 (MQ=60)

                                                                    GTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAG                           >  SRR4302540.5327453/1‑94 (MQ=60)

                                                                     TGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGC                          <  SRR4302540.8724394/94‑1 (MQ=60)

                                                                     TGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGC                          <  SRR4302540.3829234/94‑1 (MQ=60)

                                                                      GGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCA                         <  SRR4302540.4147105/94‑1 (MQ=60)

                                                                      GGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCA                         <  SRR4302540.7408903/94‑1 (MQ=60)

                                                                       GGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAA                        >  SRR4302540.2026044/1‑94 (MQ=60)

                                                                        GCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAA                       <  SRR4302540.2751427/94‑1 (MQ=60)

                                                                        GCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAA                       >  SRR4302540.1247673/1‑94 (MQ=60)

                                                                        GCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAA                       <  SRR4302540.6256293/94‑1 (MQ=60)

                                                                         CCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAA                      >  SRR4302540.9782888/1‑94 (MQ=60)

                                                                         CCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAA                      >  SRR4302540.3235565/1‑94 (MQ=60)

                                                                         CCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAA                      <  SRR4302540.4009271/94‑1 (MQ=60)

                                                                           AAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATT                    >  SRR4302540.9244468/1‑94 (MQ=60)

                                                                            AAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTC                   >  SRR4302540.8698002/1‑94 (MQ=60)

                                                                            AAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTC                   >  SRR4302540.5395872/1‑94 (MQ=60)

                                                                             AGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCC                  <  SRR4302540.5637217/94‑1 (MQ=60)

                                                                             AGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCC                  <  SRR4302540.9640308/94‑1 (MQ=60)

                                                                             AGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCC                  <  SRR4302540.4575507/94‑1 (MQ=60)

                                                                              GACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCG                 <  SRR4302540.9178361/94‑1 (MQ=60)

                                                                              GACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCG                 <  SRR4302540.7243068/94‑1 (MQ=60)

                                                                              GACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCG                 <  SRR4302540.7727105/94‑1 (MQ=60)

                                                                               ACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGG                >  SRR4302540.3147821/1‑94 (MQ=60)

                                                                                CAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGC               <  SRR4302540.480085/94‑1 (MQ=60)

                                                                                CAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGC               >  SRR4302540.7556097/1‑94 (MQ=60)

                                                                                 AAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCG              >  SRR4302540.4666501/1‑94 (MQ=60)

                                                                                 AAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCG              <  SRR4302540.9840878/94‑1 (MQ=60)

                                                                                 AAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCG              <  SRR4302540.5592657/94‑1 (MQ=60)

                                                                                  AAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGG             >  SRR4302540.5489321/1‑94 (MQ=60)

                                                                                  AAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGG             <  SRR4302540.6922710/94‑1 (MQ=60)

                                                                                  AAAAAACCAAGAGTGAAGAAGCAGGTTGCCTGCAGCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGG             <  SRR4302540.5767763/94‑1 (MQ=60)

                                                                                   AAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGC            >  SRR4302540.2218081/1‑94 (MQ=60)

                                                                                   AAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGC            <  SRR4302540.7343632/94‑1 (MQ=60)

                                                                                   AAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGC            <  SRR4302540.3870281/94‑1 (MQ=60)

                                                                                    AAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCA           <  SRR4302540.518483/94‑1 (MQ=60)

                                                                                     AAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGA          <  SRR4302540.6405681/94‑1 (MQ=60)

                                                                                     AAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGA          >  SRR4302540.6508193/1‑94 (MQ=60)

                                                                                      AACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGCCGAA         >  SRR4302540.6983331/1‑94 (MQ=60)

                                                                                      AACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTACGGCGGCGAA         >  SRR4302540.5180550/1‑94 (MQ=60)

                                                                                      AACCAATAGGGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAA         <  SRR4302540.5832975/94‑1 (MQ=60)

                                                                                         CAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT      >  SRR4302540.482859/1‑94 (MQ=60)

                                                                                         CAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT      >  SRR4302540.5950699/1‑94 (MQ=60)

                                                                                         CAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT      <  SRR4302540.7158239/94‑1 (MQ=60)

                                                                                         CAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT      <  SRR4302540.4117332/94‑1 (MQ=60)

                                                                                           ATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCA    >  SRR4302540.9709370/1‑94 (MQ=60)

                                                                                           ATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCA    <  SRR4302540.2691705/94‑1 (MQ=60)

                                                                                            TAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAA   >  SRR4302540.1184871/1‑94 (MQ=60)

                                                                                            TAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAA   >  SRR4302540.8028201/1‑94 (MQ=60)

                                                                                            TAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATACCGGCGGCGAAAATCAA   >  SRR4302540.8028202/1‑94 (MQ=60)

                                                                                             AGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCGAAATTCCGGCGGCGAAAATCAAA  >  SRR4302540.5906623/1‑94 (MQ=60)

                                                                                             AGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA  >  SRR4302540.9434977/1‑94 (MQ=60)

AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA  >  NC_000913/3845100‑3845286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`