Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,845,193 |
G→A |
T354T (ACC→ACT) |
uhpC ← |
UhpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,845,193 | 0 | G | A | 100.0%
| 857.4
/ NA
| 231 | T354T (ACC→ACT) | uhpC | UhpC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (128/103); total (128/103) |
Only 100 of 232 total aligned reads displayed.
CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAA > NC_000913/3845103‑3845281
|
ccccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGCTTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGt < 1:6235015/93‑1 (MQ=255)
ccccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGt < 1:4312052/93‑1 (MQ=255)
cccGTAGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTg > 2:4102986/1‑93 (MQ=255)
ccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTga < 2:5202432/93‑1 (MQ=255)
ccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTga > 1:6109671/1‑93 (MQ=255)
cGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTgaa < 1:14643/93‑1 (MQ=255)
gTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTgaag > 1:4295125/1‑93 (MQ=255)
gccgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGaagaag > 1:544177/1‑93 (MQ=255)
cgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCa < 2:5384803/93‑1 (MQ=255)
cccccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAg < 2:5897711/92‑1 (MQ=255)
ccccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAgg > 1:2824667/1‑93 (MQ=255)
cccTGCTGCCTCTTTGTGGTAACACCCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGt < 2:1904083/93‑1 (MQ=255)
cccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGt > 2:6167875/1‑93 (MQ=255)
cccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGt > 1:4647157/1‑93 (MQ=255)
cccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGt < 1:5802395/93‑1 (MQ=255)
ccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGtt > 2:3745288/1‑93 (MQ=255)
ccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGtt < 2:4305474/93‑1 (MQ=255)
cTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTg > 1:3961072/1‑93 (MQ=255)
cTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTg > 1:553919/1‑93 (MQ=255)
tGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGc > 1:9425/1‑93 (MQ=255)
tGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGc > 2:4943439/1‑93 (MQ=255)
tGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGc > 2:291557/1‑93 (MQ=255)
gccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGcc > 1:3489891/1‑93 (MQ=255)
ccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCt < 1:5670157/93‑1 (MQ=255)
ccgccTCTTTGTGAGAACACTCAGCCGCCGCCATACCGATTAACATCTGTGGGCAAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCt < 2:3317473/93‑1 (MQ=255)
cgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTg < 1:3802676/93‑1 (MQ=255)
cgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTg < 1:491784/93‑1 (MQ=255)
gccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGATGCCTGc > 1:36399/1‑93 (MQ=255)
tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc > 2:4367696/1‑93 (MQ=255)
tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc > 1:726420/1‑93 (MQ=255)
tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATc > 1:4057195/1‑93 (MQ=255)
tgtgGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGt < 2:5059371/93‑1 (MQ=255)
gtgGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTa < 1:1601636/93‑1 (MQ=255)
gtgGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTa < 1:4595058/93‑1 (MQ=255)
gggAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGc > 1:528819/1‑93 (MQ=255)
ggACCACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCt < 2:788449/93‑1 (MQ=255)
cgctctGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCa < 1:1731464/91‑1 (MQ=255)
acTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCaa > 1:6271634/1‑93 (MQ=255)
acTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCaa < 2:5808888/93‑1 (MQ=255)
tctGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAt > 1:4862240/1‑93 (MQ=255)
tctGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAt < 2:4007228/93‑1 (MQ=255)
ctGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATg < 1:451001/93‑1 (MQ=255)
tGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATgg < 1:1241342/93‑1 (MQ=255)
gccgccgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGc < 2:4605118/93‑1 (MQ=255)
ccgccgccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCa < 1:378363/93‑1 (MQ=255)
gccgccATACCGATTAACATCTGTGGGCCAACGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATAGCATc > 1:1160405/1‑93 (MQ=255)
gccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGc > 2:3360815/1‑93 (MQ=255)
gccATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGCCATCAGc > 2:4700148/1‑93 (MQ=255)
cATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCca > 2:1164311/1‑93 (MQ=255)
cATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCca > 2:2418703/1‑93 (MQ=255)
tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCGTCACGTAGCTGGCAAATGGCATCAGCcaca < 2:18051/93‑1 (MQ=255)
tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca < 2:2249266/93‑1 (MQ=255)
tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca < 2:1457440/93‑1 (MQ=255)
tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca < 1:4289217/93‑1 (MQ=255)
tACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCcaca > 2:1336235/1‑93 (MQ=255)
aCCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAg > 1:1047233/1‑93 (MQ=255)
ccGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg > 1:2800726/1‑93 (MQ=255)
ccGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg > 1:190141/1‑93 (MQ=255)
ccGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg > 1:521638/1‑93 (MQ=255)
cGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAggg > 1:2435631/1‑93 (MQ=255)
gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa > 1:771366/1‑93 (MQ=255)
gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa > 2:4271551/1‑93 (MQ=255)
gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa < 1:2360567/93‑1 (MQ=255)
gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa < 2:4744657/93‑1 (MQ=255)
gATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGa < 2:593226/93‑1 (MQ=255)
aTTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAg > 2:1548924/1‑93 (MQ=255)
ttAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGc < 1:6147731/93‑1 (MQ=255)
ttAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGc > 1:3743915/1‑93 (MQ=255)
ttAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGc > 1:2809807/1‑93 (MQ=255)
tAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGcc > 2:3844174/1‑93 (MQ=255)
aCATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGa < 1:3102165/93‑1 (MQ=255)
tCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTg > 1:4051477/1‑93 (MQ=255)
tCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTg > 2:4471312/1‑93 (MQ=255)
tCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTg > 1:1990240/1‑93 (MQ=255)
tgtgGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGaa > 1:3857135/1‑93 (MQ=255)
gtgGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGaaa < 1:6078483/93‑1 (MQ=255)
gtgGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGaaa < 2:2547235/93‑1 (MQ=255)
gtgGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGaaa > 2:1783847/1‑93 (MQ=255)
tgGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAg < 1:2175805/93‑1 (MQ=255)
gCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaa < 1:247322/93‑1 (MQ=255)
gCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaa > 2:4966883/1‑93 (MQ=255)
gCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaa < 1:3386437/93‑1 (MQ=255)
ccAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaaa > 1:1357847/1‑93 (MQ=255)
aaaGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAt < 1:4730318/93‑1 (MQ=255)
aaaGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAt > 1:2485245/1‑93 (MQ=255)
aGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTc > 2:3106381/1‑93 (MQ=255)
gACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTcc < 2:5680983/93‑1 (MQ=255)
gACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTcc > 2:5589748/1‑93 (MQ=255)
gACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTcc > 1:3243304/1‑93 (MQ=255)
aCAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCAGCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcg < 2:5107954/93‑1 (MQ=255)
aanaaaCCNATAGTGAAGAAGCAGGTTGNCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggtg < 2:3295033/93‑3 (MQ=255)
aaaaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggcg < 1:3576865/93‑1 (MQ=255)
aaaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcggcgg < 1:5044248/93‑1 (MQ=255)
aaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCggcggc > 1:5895098/1‑93 (MQ=255)
aaaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAGGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCggcggc < 1:1524970/93‑1 (MQ=255)
aaaCCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGgcggcg > 2:6177658/1‑93 (MQ=255)
cAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaaa < 1:1682806/93‑1 (MQ=255)
cAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaaa < 2:300602/93‑1 (MQ=255)
cAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaaa > 2:2139114/1‑93 (MQ=255)
cAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaaa > 2:1997479/1‑93 (MQ=255)
|
CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAA > NC_000913/3845103‑3845281
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA > NC_000913/3845100‑3845286
|
AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATA < SRR4302533.2234452/94‑1 (MQ=60)
AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATA > SRR4302533.114115/1‑94 (MQ=60)
AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATA > SRR4302533.3790882/1‑94 (MQ=60)
AACGCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAG < SRR4302533.5256902/94‑1 (MQ=60)
AACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAG > SRR4302533.4965725/1‑94 (MQ=60)
ACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGT < SRR4302533.3088706/94‑1 (MQ=60)
ACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGT > SRR4302533.4079693/1‑94 (MQ=60)
ACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGT < SRR4302533.3424218/94‑1 (MQ=60)
CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGCTTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTG < SRR4302533.6272347/94‑1 (MQ=60)
CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTG < SRR4302533.649175/94‑1 (MQ=60)
CCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTG < SRR4302533.4338011/94‑1 (MQ=60)
CCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGA > SRR4302533.6146554/1‑94 (MQ=60)
CGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAG < SRR4302533.14747/94‑1 (MQ=60)
CGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAG > SRR4302533.4320956/1‑94 (MQ=60)
CGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAG > SRR4302533.489948/1‑94 (MQ=60)
GTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGA < SRR4302533.5102598/94‑1 (MQ=60)
GTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGA > SRR4302533.2447340/1‑94 (MQ=60)
GTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGA > SRR4302533.4049428/1‑94 (MQ=60)
TCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAA < SRR4302533.6199485/94‑1 (MQ=60)
CGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAG > SRR4302533.547409/1‑94 (MQ=60)
GCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGC < SRR4302533.3790360/94‑1 (MQ=60)
CCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCA > SRR4302533.738316/1‑94 (MQ=60)
GCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGG > SRR4302533.2842049/1‑94 (MQ=60)
CCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGT > SRR4302533.4675316/1‑94 (MQ=60)
CCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGT > SRR4302533.2503945/1‑94 (MQ=60)
CCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGT > SRR4302533.853045/1‑94 (MQ=60)
CCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTT > SRR4302533.2489303/1‑94 (MQ=60)
CCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTT < SRR4302533.5837444/94‑1 (MQ=60)
CCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTT > SRR4302533.6136391/1‑94 (MQ=60)
CCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTG > SRR4302533.557203/1‑94 (MQ=60)
CCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTG > SRR4302533.3985205/1‑94 (MQ=60)
CTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGC > SRR4302533.9505/1‑94 (MQ=60)
TGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCC > SRR4302533.3511413/1‑94 (MQ=60)
GCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCT < SRR4302533.144752/94‑1 (MQ=60)
CCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTG > SRR4302533.3652098/1‑94 (MQ=60)
CCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTG < SRR4302533.5704404/94‑1 (MQ=60)
CGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGC > SRR4302533.4862688/1‑94 (MQ=60)
CGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGC < SRR4302533.494724/94‑1 (MQ=60)
CGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGC > SRR4302533.3860838/1‑94 (MQ=60)
CGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGC > SRR4302533.411620/1‑94 (MQ=60)
CGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGC < SRR4302533.3825945/94‑1 (MQ=60)
CGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGATGCCTGC > SRR4302533.36639/1‑94 (MQ=60)
GCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCA > SRR4302533.1632170/1‑94 (MQ=60)
GCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCA < SRR4302533.4316150/94‑1 (MQ=60)
CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC > SRR4302533.4081893/1‑94 (MQ=60)
CTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATC > SRR4302533.730710/1‑94 (MQ=60)
CTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCAC < SRR4302533.3813617/94‑1 (MQ=60)
TTTGTGGGAACCCTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAACCCAATAGTGAAGAAGCAGGTTGCCTGCATCACG < SRR4302533.5432727/94‑1 (MQ=60)
TTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACG < SRR4302533.553151/94‑1 (MQ=60)
TTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGCTGCCTGCATCACG > SRR4302533.2361871/1‑94 (MQ=60)
TGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTA < SRR4302533.4350957/94‑1 (MQ=60)
GTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAG < SRR4302533.1611332/94‑1 (MQ=60)
GTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAG < SRR4302533.4622893/94‑1 (MQ=60)
GTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAG < SRR4302533.6176262/94‑1 (MQ=60)
TGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGC > SRR4302533.531964/1‑94 (MQ=60)
GGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCT > SRR4302533.4692298/1‑94 (MQ=60)
AACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGC < SRR4302533.4575119/94‑1 (MQ=60)
CGCTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAA < SRR4302533.1741963/94‑1 (MQ=60)
CACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAA > SRR4302533.6309095/1‑94 (MQ=60)
CTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAT > SRR4302533.5328900/1‑94 (MQ=60)
CTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAT > SRR4302533.4891710/1‑94 (MQ=60)
CTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAT > SRR4302533.3417693/1‑94 (MQ=60)
CTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGG < SRR4302533.453700/94‑1 (MQ=60)
TGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGC < SRR4302533.1248761/94‑1 (MQ=60)
GCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCA > SRR4302533.4951205/1‑94 (MQ=60)
GCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCA > SRR4302533.5598056/1‑94 (MQ=60)
CCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCAT < SRR4302533.380639/94‑1 (MQ=60)
CGCCGCCATACCGATTAACATCTGTGGGCCAACGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATAGCATC > SRR4302533.1167368/1‑94 (MQ=60)
CGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATC < SRR4302533.5747717/94‑1 (MQ=60)
GCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCA > SRR4302533.3687119/1‑94 (MQ=60)
CCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAG < SRR4302533.4322046/94‑1 (MQ=60)
CCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAG > SRR4302533.2457477/1‑94 (MQ=60)
CGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGC > SRR4302533.126351/1‑94 (MQ=60)
CGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGC < SRR4302533.431207/94‑1 (MQ=60)
GCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCC > SRR4302533.6126425/1‑94 (MQ=60)
GCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCC > SRR4302533.1676269/1‑94 (MQ=60)
CCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCA > SRR4302533.6284501/1‑94 (MQ=60)
CATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCAC > SRR4302533.187624/1‑94 (MQ=60)
ATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACA > SRR4302533.2687084/1‑94 (MQ=60)
TACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAG < SRR4302533.4315010/94‑1 (MQ=60)
TACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAG > SRR4302533.3935014/1‑94 (MQ=60)
TACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAG > SRR4302533.1053387/1‑94 (MQ=60)
ACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGG < SRR4302533.638839/94‑1 (MQ=60)
ACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGG > SRR4302533.191329/1‑94 (MQ=60)
ACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGG > SRR4302533.2817951/1‑94 (MQ=60)
ACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGG > SRR4302533.524733/1‑94 (MQ=60)
CCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGG < SRR4302533.3204641/94‑1 (MQ=60)
CCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGG > SRR4302533.2450673/1‑94 (MQ=60)
CGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGA > SRR4302533.775905/1‑94 (MQ=60)
GATTAACATCTGTGGGCCAAAGACACAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG > SRR4302533.2823661/1‑94 (MQ=60)
GATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG > SRR4302533.956873/1‑94 (MQ=60)
GATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG < SRR4302533.2375155/94‑1 (MQ=60)
GATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAG > SRR4302533.1986386/1‑94 (MQ=60)
ATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGC > SRR4302533.2827097/1‑94 (MQ=60)
ATTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGC > SRR4302533.3766875/1‑94 (MQ=60)
TTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCC > SRR4302533.4448394/1‑94 (MQ=60)
TTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCC < SRR4302533.2162990/94‑1 (MQ=60)
TTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCC < SRR4302533.6184742/94‑1 (MQ=60)
TTAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCC < SRR4302533.3539585/94‑1 (MQ=60)
TAACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCG > SRR4302533.1244524/1‑94 (MQ=60)
ACATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGAC < SRR4302533.3121237/94‑1 (MQ=60)
ATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTG > SRR4302533.4076154/1‑94 (MQ=60)
ATCTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTG > SRR4302533.2002428/1‑94 (MQ=60)
CTGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAA > SRR4302533.3880684/1‑94 (MQ=60)
TGTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAA > SRR4302533.1944439/1‑94 (MQ=60)
GTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAG < SRR4302533.6115246/94‑1 (MQ=60)
GTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAG < SRR4302533.4723975/94‑1 (MQ=60)
GTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAG < SRR4302533.2901637/94‑1 (MQ=60)
GTGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAG < SRR4302533.3956387/94‑1 (MQ=60)
TGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGC < SRR4302533.3274922/94‑1 (MQ=60)
TGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGC < SRR4302533.1494127/94‑1 (MQ=60)
TGGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGC < SRR4302533.2189216/94‑1 (MQ=60)
GGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCA < SRR4302533.5885451/94‑1 (MQ=60)
GGGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCA < SRR4302533.4959999/94‑1 (MQ=60)
GGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAA < SRR4302533.1452675/94‑1 (MQ=60)
GGCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAA > SRR4302533.4669193/1‑94 (MQ=60)
GCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAA < SRR4302533.3407346/94‑1 (MQ=60)
GCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAA > SRR4302533.2827652/1‑94 (MQ=60)
GCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAA > SRR4302533.1366009/1‑94 (MQ=60)
GCCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAA < SRR4302533.248850/94‑1 (MQ=60)
CCAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAA > SRR4302533.6105788/1‑94 (MQ=60)
CAAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAAT > SRR4302533.2500558/1‑94 (MQ=60)
AAAGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATT < SRR4302533.4758996/94‑1 (MQ=60)
AGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCC < SRR4302533.5739052/94‑1 (MQ=60)
AGACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCC > SRR4302533.3263292/1‑94 (MQ=60)
ACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGG < SRR4302533.3718597/94‑1 (MQ=60)
ACAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGG > SRR4302533.156216/1‑94 (MQ=60)
CAAAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGC > SRR4302533.2405256/1‑94 (MQ=60)
AAAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGG < SRR4302533.3598908/94‑1 (MQ=60)
AAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGC > SRR4302533.5930700/1‑94 (MQ=60)
AAAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGC < SRR4302533.5074771/94‑1 (MQ=60)
AAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCG > SRR4302533.1080251/1‑94 (MQ=60)
AAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCG > SRR4302533.3423342/1‑94 (MQ=60)
AAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCG < SRR4302533.2901853/94‑1 (MQ=60)
AAAACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAAGGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCG < SRR4302533.1534150/94‑1 (MQ=60)
ACCAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAA < SRR4302533.1734781/94‑1 (MQ=60)
CAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT < SRR4302533.1692999/94‑1 (MQ=60)
CAATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAAT < SRR4302533.5248230/94‑1 (MQ=60)
ATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCA > SRR4302533.2942550/1‑94 (MQ=60)
ATAGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCA < SRR4302533.5783315/94‑1 (MQ=60)
AGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA > SRR4302533.6331079/1‑94 (MQ=60)
AGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA < SRR4302533.5268917/94‑1 (MQ=60)
|
AAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAA > NC_000913/3845100‑3845286
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
