Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,857,508	T→C	E79G (GAA→GGA)	yidK ←	putative cotransporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,857,508	0	T	C	100.0%	799.1 / NA	246	E79G (GAA→GGA)	yidK	putative cotransporter
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/135); total (111/135)

Only 100 of 260 total aligned reads displayed.

AGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAA  >  NC_000913/3857418‑3857597

aGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTccc                                                                                         >  1:436744/1‑93 (MQ=255)

aGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTccc                                                                                         <  1:1992400/93‑1 (MQ=255)

 gAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTcccc                                                                                        <  2:657700/93‑1 (MQ=255)

 gAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTcccc                                                                                        <  1:4328880/93‑1 (MQ=255)

 gAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTcccc                                                                                        <  1:2680407/93‑1 (MQ=255)

  aaaaTCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCa                                                                                       <  2:2284505/93‑1 (MQ=255)

       cGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCa                                                                                  >  1:4853067/1‑93 (MQ=255)

       cGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCa                                                                                  >  2:876664/1‑93 (MQ=255)

         gggATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATc                                                                                <  1:734319/93‑1 (MQ=255)

         gggATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATc                                                                                <  1:1271527/93‑1 (MQ=255)

          ggATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCa                                                                               >  2:5327793/1‑93 (MQ=255)

          ggATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCa                                                                               <  1:6276780/93‑1 (MQ=255)

           gATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCAc                                                                              >  2:2248862/1‑93 (MQ=255)

            aTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCAcc                                                                             <  1:1190637/93‑1 (MQ=255)

            aTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCAcc                                                                             >  1:2204113/1‑93 (MQ=255)

            aTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCAcc                                                                             >  2:3649640/1‑93 (MQ=255)

             tggtggCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCg                                                                            <  1:3618380/93‑1 (MQ=255)

              ggtggCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGa                                                                           <  2:3178083/93‑1 (MQ=255)

                tggCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACa                                                                         <  2:2399162/93‑1 (MQ=255)

                tggCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACa                                                                         <  1:690849/93‑1 (MQ=255)

                tggCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACa                                                                         >  1:3134671/1‑93 (MQ=255)

                 ggCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACAt                                                                        >  1:3827970/1‑93 (MQ=255)

                 ggCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACAt                                                                        >  2:3449609/1‑93 (MQ=255)

                    aaTGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGcc                                                                     >  2:4860347/1‑93 (MQ=255)

                      tGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGc                                                                   >  1:5344208/1‑93 (MQ=255)

                          gcgcTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCtttt                                                               <  2:1276064/93‑1 (MQ=255)

                          gcgcTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCtttt                                                               <  2:5906641/93‑1 (MQ=255)

                           cgcTTCAGATAGCGCGGTAAAAAGATTAGCGCAAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTg                                                              >  1:2756717/1‑93 (MQ=255)

                            gcTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGt                                                             >  1:2801172/1‑93 (MQ=255)

                             cTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTa                                                            <  2:301307/93‑1 (MQ=255)

                             cTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTa                                                            <  2:3436384/93‑1 (MQ=255)

                             cTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTa                                                            >  2:413609/1‑93 (MQ=255)

                             cTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTa                                                            <  2:3481681/93‑1 (MQ=255)

                               tCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAgg                                                          <  1:5028034/93‑1 (MQ=255)

                                cAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGc                                                         <  2:4089347/93‑1 (MQ=255)

                                 aGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCCCCGACATGCCGCTTTTGTAGGcc                                                        <  2:2869531/93‑1 (MQ=255)

                                 aGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAgggc                                                        >  1:5092159/1‑91 (MQ=255)

                                 aGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGcc                                                        <  2:5465455/93‑1 (MQ=255)

                                 aGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGcc                                                        <  1:5720100/93‑1 (MQ=255)

                                      gcgcGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGccc                                                   <  1:3473254/93‑1 (MQ=255)

                                       cgcgGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCg                                                  >  1:3398721/1‑93 (MQ=255)

                                          ggTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGaa                                               >  2:1222799/1‑93 (MQ=255)

                                           gTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGaaa                                              <  2:5185682/93‑1 (MQ=255)

                                              aaaaGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGc                                           <  2:2641379/93‑1 (MQ=255)

                                              aaaaGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGc                                           >  2:6011668/1‑93 (MQ=255)

                                               aaaGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGcc                                          >  1:1808827/1‑93 (MQ=255)

                                                  gATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGAc                                       >  1:423560/1‑93 (MQ=255)

                                                  gATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGAc                                       >  2:3287522/1‑93 (MQ=255)

                                                   aTTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGAcc                                      <  2:1875994/93‑1 (MQ=255)

                                                    ttAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCa                                     >  1:6048060/1‑93 (MQ=255)

                                                     tAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAg                                    >  1:2442562/1‑93 (MQ=255)

                                                      aGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAgt                                   <  1:519261/93‑1 (MQ=255)

                                                      aGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAgt                                   <  2:4203725/93‑1 (MQ=255)

                                                      aGCGCGAGCAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAgt                                   <  1:2270704/93‑1 (MQ=255)

                                                       gcgcGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAgtt                                  <  2:2979800/93‑1 (MQ=255)

                                                       gcgcGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAgtt                                  <  1:4523679/93‑1 (MQ=255)

                                                         gcgAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAgttgt                                <  1:4478409/93‑1 (MQ=255)

                                                         gcgAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAgttgt                                >  1:3673111/1‑93 (MQ=255)

                                                         gcgAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAgttgt                                <  2:5503787/93‑1 (MQ=255)

                                                           gAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTc                              >  2:3792364/1‑93 (MQ=255)

                                                            aGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTcc                             >  2:4621879/1‑93 (MQ=255)

                                                            aGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTcc                             <  1:1040248/93‑1 (MQ=255)

                                                            aGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTcc                             >  1:2402754/1‑93 (MQ=255)

                                                              gAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGt                           <  1:155629/93‑1 (MQ=255)

                                                              gAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGt                           >  1:5464197/1‑93 (MQ=255)

                                                                aGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTgg                         >  1:5698964/1‑93 (MQ=255)

                                                                 gATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGa                        >  2:5405040/1‑93 (MQ=255)

                                                                 gATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGa                        <  1:1290614/93‑1 (MQ=255)

                                                                  aTCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGaa                       >  1:5915340/1‑93 (MQ=255)

                                                                  aTCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGaa                       >  2:4169081/1‑93 (MQ=255)

                                                                   tCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGaaa                      >  1:4775258/1‑93 (MQ=255)

                                                                    cggCGTCACCGCTGAAGTCGCTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAg                     <  2:3839071/91‑1 (MQ=255)

                                                                      gCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAggt                   >  1:149194/1‑93 (MQ=255)

                                                                       cGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAggtt                  <  2:1516931/93‑1 (MQ=255)

                                                                       cGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAggtt                  <  2:5218926/93‑1 (MQ=255)

                                                                        gTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAggttg                 <  1:2910084/93‑1 (MQ=255)

                                                                        gTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAggttg                 >  2:4363129/1‑93 (MQ=255)

                                                                        gTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAggttg                 >  1:989024/1‑93 (MQ=255)

                                                                         tCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAggttgg                >  2:3710993/1‑93 (MQ=255)

                                                                          cACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAgggtggt               >  2:3691144/1‑93 (MQ=255)

                                                                           aCCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAggttggtt              <  1:4944244/93‑1 (MQ=255)

                                                                            ccGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTa             >  1:2632813/1‑93 (MQ=255)

                                                                            ccGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTa             <  1:5493694/93‑1 (MQ=255)

                                                                             cGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAg            <  2:1533796/93‑1 (MQ=255)

                                                                              gCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGc           <  2:1636493/93‑1 (MQ=255)

                                                                              gCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGGTGGTTAGc           <  2:6123594/93‑1 (MQ=255)

                                                                               cTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCa          <  1:3219878/93‑1 (MQ=255)

                                                                               cTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCa          <  2:392228/93‑1 (MQ=255)

                                                                                tGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCAt         >  2:835124/1‑93 (MQ=255)

                                                                                 gAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCAtt        >  1:1101599/1‑93 (MQ=255)

                                                                                 gAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCAtt        <  2:5008188/93‑1 (MQ=255)

                                                                                  aaGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTa       >  2:535581/1‑93 (MQ=255)

                                                                                   aGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTaa      <  2:2443343/93‑1 (MQ=255)

                                                                                   aGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTaa      <  1:5222111/93‑1 (MQ=255)

                                                                                    gTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAAc     <  2:1393845/93‑1 (MQ=255)

                                                                                    gTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAAc     >  1:939645/1‑93 (MQ=255)

                                                                                    gTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAAc     >  1:3883564/1‑93 (MQ=255)

                                                                                     tCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACg    <  1:5959702/93‑1 (MQ=255)

                                                                                       aCTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGaa  <  2:1775393/93‑1 (MQ=255)

                                                                                       aCTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGaa  <  1:2310666/93‑1 (MQ=255)

AGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAA  >  NC_000913/3857418‑3857597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAAGCGG  >  NC_000913/3857416‑3857601

CCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCC                                                                                              >  SRR4302533.5138729/1‑94 (MQ=60)

 CAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCC                                                                                             <  SRR4302533.1011123/94‑1 (MQ=60)

 CAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCC                                                                                             >  SRR4302533.439346/1‑94 (MQ=60)

 CAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCC                                                                                             <  SRR4302533.3906314/94‑1 (MQ=60)

  AGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCC                                                                                            <  SRR4302533.2004613/94‑1 (MQ=60)

  AGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCC                                                                                            >  SRR4302533.5400825/1‑94 (MQ=60)

  AGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCC                                                                                            <  SRR4302533.3474669/94‑1 (MQ=60)

   GAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCA                                                                                           <  SRR4302533.4354958/94‑1 (MQ=60)

   GAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCA                                                                                           <  SRR4302533.2696832/94‑1 (MQ=60)

     AAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGC                                                                                         <  SRR4302533.4544822/94‑1 (MQ=60)

       ATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCC                                                                                       <  SRR4302533.750092/94‑1 (MQ=60)

        TCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCA                                                                                      >  SRR4302533.4882478/1‑94 (MQ=60)

          GGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATC                                                                                    <  SRR4302533.1497911/94‑1 (MQ=60)

           GGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCA                                                                                   <  SRR4302533.738640/94‑1 (MQ=60)

           GGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCA                                                                                   <  SRR4302533.1279132/94‑1 (MQ=60)

           GGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGGCACCGCTGAAGTCACTCCCCAGCCCATCA                                                                                   >  SRR4302533.1003805/1‑94 (MQ=60)

            GGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCAC                                                                                  <  SRR4302533.6314260/94‑1 (MQ=60)

             GATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACC                                                                                 >  SRR4302533.2217698/1‑94 (MQ=60)

              ATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCG                                                                                <  SRR4302533.1197792/94‑1 (MQ=60)

              ATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCG                                                                                <  SRR4302533.108565/94‑1 (MQ=60)

               TGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGA                                                                               <  SRR4302533.3640636/94‑1 (MQ=60)

                GGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGAC                                                                              >  SRR4302533.5831339/1‑94 (MQ=60)

                 GTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACA                                                                             >  SRR4302533.3153945/1‑94 (MQ=60)

                  TGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACAT                                                                            >  SRR4302533.3851374/1‑94 (MQ=60)

                  TGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACAT                                                                            <  SRR4302533.694934/94‑1 (MQ=60)

                  TGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACAT                                                                            <  SRR4302533.5953013/94‑1 (MQ=60)

                     CAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCC                                                                         >  SRR4302533.4309510/1‑94 (MQ=60)

                     CAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCC                                                                         <  SRR4302533.2817139/94‑1 (MQ=60)

                      AATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCG                                                                        >  SRR4302533.5182657/1‑94 (MQ=60)

                       ATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGC                                                                       >  SRR4302533.5376257/1‑94 (MQ=60)

                        TGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCT                                                                      <  SRR4302533.2907973/94‑1 (MQ=60)

                            GCGCTTCAGATAGCGCGGTCAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTC                                                                  >  SRR4302533.2773623/1‑94 (MQ=60)

                            GCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCAAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTG                                                                  >  SRR4302533.2773622/1‑94 (MQ=60)

                             CGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGTGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGT                                                                 >  SRR4302533.5252991/1‑94 (MQ=60)

                             CGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGT                                                                 <  SRR4302533.2333340/94‑1 (MQ=60)

                             CGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGT                                                                 <  SRR4302533.4664004/94‑1 (MQ=60)

                             CGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGT                                                                 <  SRR4302533.4908644/94‑1 (MQ=60)

                             CGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGT                                                                 >  SRR4302533.2818402/1‑94 (MQ=60)

                                TTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGG                                                              >  SRR4302533.3828617/1‑94 (MQ=60)

                                TTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGG                                                              >  SRR4302533.5117308/1‑94 (MQ=60)

                                 TCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGC                                                             <  SRR4302533.5058481/94‑1 (MQ=60)

                                  CAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGGC                                                            >  SRR4302533.5122921/1‑94 (MQ=60)

                                  CAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCC                                                            >  SRR4302533.6027593/1‑94 (MQ=60)

                                   AGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCT                                                           <  SRR4302533.5754638/94‑1 (MQ=60)

                                   AGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCT                                                           >  SRR4302533.4115252/1‑94 (MQ=60)

                                   AGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCT                                                           >  SRR4302533.1291311/1‑94 (MQ=60)

                                   AGATAGCGCGATAAAAAGATTAGCGCGCGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCCCCGACATGCCGCTTTTATAGGCCT                                                           <  SRR4302533.6337919/94‑1 (MQ=60)

                                    GATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTG                                                          <  SRR4302533.2708950/94‑1 (MQ=60)

                                       AGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCC                                                       <  SRR4302533.5783180/94‑1 (MQ=60)

                                       AGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCC                                                       <  SRR4302533.3285197/94‑1 (MQ=60)

                                       AGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCC                                                       >  SRR4302533.743110/1‑94 (MQ=60)

                                        GCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCG                                                      <  SRR4302533.3494686/94‑1 (MQ=60)

                                        GCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCG                                                      >  SRR4302533.3419710/1‑94 (MQ=60)

                                           CGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAA                                                   >  SRR4302533.2655997/1‑94 (MQ=60)

                                             GTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAG                                                 <  SRR4302533.1178141/94‑1 (MQ=60)

                                             GTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAG                                                 <  SRR4302533.4982939/94‑1 (MQ=60)

                                             GTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAG                                                 <  SRR4302533.1147329/94‑1 (MQ=60)

                                             GTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAG                                                 <  SRR4302533.3025721/94‑1 (MQ=60)

                                              TAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGG                                                >  SRR4302533.5056482/1‑94 (MQ=60)

                                               AAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGC                                               >  SRR4302533.1769747/1‑94 (MQ=60)

                                               AAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTGTTGTAGGCCTGCCCGGAGAGGC                                               >  SRR4302533.1797756/1‑94 (MQ=60)

                                                AAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCC                                              >  SRR4302533.1819832/1‑94 (MQ=60)

                                                AAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCC                                              <  SRR4302533.5754412/94‑1 (MQ=60)

                                                AAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCC                                              <  SRR4302533.536254/94‑1 (MQ=60)

                                                  AAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGA                                            <  SRR4302533.3986507/94‑1 (MQ=60)

                                                   AGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGAC                                           >  SRR4302533.2502196/1‑94 (MQ=60)

                                                   AGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGAC                                           >  SRR4302533.5324326/1‑94 (MQ=60)

                                                   AGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGAC                                           >  SRR4302533.2661762/1‑94 (MQ=60)

                                                   AGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGAC                                           >  SRR4302533.1534288/1‑94 (MQ=60)

                                                   AGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGAC                                           >  SRR4302533.426094/1‑94 (MQ=60)

                                                    GATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACC                                          <  SRR4302533.3490800/94‑1 (MQ=60)

                                                    GATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACC                                          <  SRR4302533.318481/94‑1 (MQ=60)

                                                     ATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCA                                         >  SRR4302533.6084706/1‑94 (MQ=60)

                                                      TTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAG                                        >  SRR4302533.2457641/1‑94 (MQ=60)

                                                      TTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAG                                        <  SRR4302533.3170557/94‑1 (MQ=60)

                                                        AGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTT                                      <  SRR4302533.522346/94‑1 (MQ=60)

                                                        AGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTT                                      <  SRR4302533.72293/94‑1 (MQ=60)

                                                        AGCGCGAGCAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTT                                      <  SRR4302533.2284754/94‑1 (MQ=60)

                                                         GCGCGAGGAAGATCAGCGTCACCGCTTAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTG                                     <  SRR4302533.5636930/94‑1 (MQ=60)

                                                         GCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTG                                     <  SRR4302533.4551061/94‑1 (MQ=60)

                                                         GCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTG                                     <  SRR4302533.6312593/94‑1 (MQ=60)

                                                          CGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGT                                    >  SRR4302533.3695683/1‑94 (MQ=60)

                                                           GCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTT                                   <  SRR4302533.1288231/94‑1 (MQ=60)

                                                           GCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTT                                   <  SRR4302533.4505505/94‑1 (MQ=60)

                                                           GCGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTT                                   <  SRR4302533.3591700/94‑1 (MQ=60)

                                                            CGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTC                                  >  SRR4302533.2238865/1‑94 (MQ=60)

                                                            CGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTC                                  <  SRR4302533.4907658/94‑1 (MQ=60)

                                                            CGAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTC                                  >  SRR4302533.4882207/1‑94 (MQ=60)

                                                             GAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCC                                 >  SRR4302533.2417592/1‑94 (MQ=60)

                                                             GAGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCC                                 >  SRR4302533.4663046/1‑94 (MQ=60)

                                                              AGGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCG                                <  SRR4302533.1046364/94‑1 (MQ=60)

                                                               GGAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGT                               >  SRR4302533.5497125/1‑94 (MQ=60)

                                                                GAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTG                              <  SRR4302533.156621/94‑1 (MQ=60)

                                                                GAAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTG                              >  SRR4302533.3812421/1‑94 (MQ=60)

                                                                 AAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGG                             >  SRR4302533.5733382/1‑94 (MQ=60)

                                                                 AAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGG                             >  SRR4302533.1990346/1‑94 (MQ=60)

                                                                 AAGATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGG                             >  SRR4302533.258132/1‑94 (MQ=60)

                                                                   GATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAA                           <  SRR4302533.1298386/94‑1 (MQ=60)

                                                                   GATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAA                           >  SRR4302533.5951088/1‑94 (MQ=60)

                                                                    ATCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAA                          >  SRR4302533.4804188/1‑94 (MQ=60)

                                                                     TCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAG                         <  SRR4302533.2297323/94‑1 (MQ=60)

                                                                     TCAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAG                         <  SRR4302533.5162298/94‑1 (MQ=60)

                                                                     GCAGCGTCGCCGCTGAAGTCCCTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGGCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAG                         <  SRR4302533.855221/94‑1 (MQ=60)

                                                                      CAGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGG                        <  SRR4302533.3660430/94‑1 (MQ=60)

                                                                       AGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGT                       <  SRR4302533.552276/94‑1 (MQ=60)

                                                                       AGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGT                       >  SRR4302533.150148/1‑94 (MQ=60)

                                                                       AGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGT                       >  SRR4302533.1246642/1‑94 (MQ=60)

                                                                       AGCGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGT                       <  SRR4302533.3114432/94‑1 (MQ=60)

                                                                         CGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTG                     <  SRR4302533.5570838/94‑1 (MQ=60)

                                                                         CGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTG                     >  SRR4302533.994809/1‑94 (MQ=60)

                                                                         CGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTG                     >  SRR4302533.2438055/1‑94 (MQ=60)

                                                                         CGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTG                     >  SRR4302533.232629/1‑94 (MQ=60)

                                                                         CGTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGGTG                     >  SRR4302533.5408752/1‑94 (MQ=60)

                                                                          GTCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGG                    <  SRR4302533.2927949/94‑1 (MQ=60)

                                                                           TCACCGCTGAATTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGT                   <  SRR4302533.3887805/94‑1 (MQ=60)

                                                                           TCACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGT                   <  SRR4302533.4498044/94‑1 (MQ=60)

                                                                             CCCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTA                 <  SRR4302533.730539/94‑1 (MQ=60)

                                                                             ACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTA                 <  SRR4302533.3650466/94‑1 (MQ=60)

                                                                             ACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTA                 <  SRR4302533.4974172/94‑1 (MQ=60)

                                                                             ACCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTA                 >  SRR4302533.2648993/1‑94 (MQ=60)

                                                                              CCGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAG                <  SRR4302533.5526832/94‑1 (MQ=60)

                                                                               CGCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGC               >  SRR4302533.6242225/1‑94 (MQ=60)

                                                                                GCTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCA              >  SRR4302533.4429264/1‑94 (MQ=60)

                                                                                 CTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCAT             <  SRR4302533.1467452/94‑1 (MQ=60)

                                                                                 CTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCAT             <  SRR4302533.2182262/94‑1 (MQ=60)

                                                                                 CTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCAT             <  SRR4302533.960630/94‑1 (MQ=60)

                                                                                 CTGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCAT             <  SRR4302533.3239733/94‑1 (MQ=60)

                                                                                  TGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATT            >  SRR4302533.1108126/1‑94 (MQ=60)

                                                                                  TGAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATT            <  SRR4302533.5956177/94‑1 (MQ=60)

                                                                                   GAAGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTA           >  SRR4302533.4365686/1‑94 (MQ=60)

                                                                                     AGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAAC         <  SRR4302533.5253532/94‑1 (MQ=60)

                                                                                     AGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAAC         >  SRR4302533.945166/1‑94 (MQ=60)

                                                                                     AGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAAC         >  SRR4302533.3907261/1‑94 (MQ=60)

                                                                                     AGTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCATGGAAAGGTTGGTTAGCATTAAC         >  SRR4302533.2264361/1‑94 (MQ=60)

                                                                                      GTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACG        >  SRR4302533.2065027/1‑94 (MQ=60)

                                                                                      GTCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACG        >  SRR4302533.1118467/1‑94 (MQ=60)

                                                                                       TCACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGA       <  SRR4302533.5995752/94‑1 (MQ=60)

                                                                                        CACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAA      <  SRR4302533.4379376/94‑1 (MQ=60)

                                                                                         ACTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAAG     <  SRR4302533.2324983/94‑1 (MQ=60)

                                                                                          CTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAAGC    <  SRR4302533.5998917/94‑1 (MQ=60)

                                                                                          CTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAAGC    >  SRR4302533.5714541/1‑94 (MQ=60)

                                                                                          CTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAAGC    <  SRR4302533.6147011/94‑1 (MQ=60)

                                                                                          CTCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAAGC    <  SRR4302533.2836142/94‑1 (MQ=60)

                                                                                           TCCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGCGGAAAGGTTGGTTAGCATTAACGAAGCG   >  SRR4302533.4505644/1‑94 (MQ=60)

                                                                                            CCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAAGCGG  >  SRR4302533.3636939/1‑94 (MQ=60)

CCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACCGACATGCCGCTTTTGTAGGCCTGCCCGGAAAGGCCGACCAGTTGTTCCGTGGAAAGGTTGGTTAGCATTAACGAAGCGG  >  NC_000913/3857416‑3857601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`