Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,860,862 T→C A123A (GCA→GCG)  b4553 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,860,8620TC100.0% 704.8 / NA 218A123A (GCA→GCG) b4553hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (131/87);  total (131/87)

Only 100 of 227 total aligned reads displayed.

AGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACT  >  NC_000913/3860773‑3860951
                                                                                         |                                                                                         
aGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGcc                                                                                        >  1:4237543/1‑93 (MQ=255)
 gcgcCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCa                                                                                       <  1:789138/93‑1 (MQ=255)
  cgcCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCAc                                                                                      >  2:5512461/1‑93 (MQ=255)
   gcCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCAcc                                                                                     <  2:767013/93‑1 (MQ=255)
   gcCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCAcc                                                                                     >  1:1221841/1‑93 (MQ=255)
    ccGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcg                                                                                    >  1:4680101/1‑93 (MQ=255)
    ccGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcg                                                                                    >  1:1013858/1‑93 (MQ=255)
     cGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcgc                                                                                   >  2:1196491/1‑93 (MQ=255)
     cGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcgc                                                                                   >  1:369504/1‑93 (MQ=255)
      gTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcgcg                                                                                  >  2:5546710/1‑93 (MQ=255)
       tCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGt                                                                                 >  1:2818939/1‑93 (MQ=255)
        cacaATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTc                                                                                >  1:656145/1‑93 (MQ=255)
         ccaATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTcc                                                                               <  1:2404297/92‑1 (MQ=255)
         acaATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTcc                                                                               >  2:2782825/1‑93 (MQ=255)
             tGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAg                                                                           >  2:5739176/1‑93 (MQ=255)
              gCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGt                                                                          >  1:4636615/1‑93 (MQ=255)
               ccGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTg                                                                         <  1:2218999/93‑1 (MQ=255)
               ccGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTg                                                                         <  2:2489821/93‑1 (MQ=255)
                cGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGa                                                                        >  2:4122982/1‑93 (MQ=255)
                cGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGa                                                                        >  2:1773290/1‑93 (MQ=255)
                cGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATACCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGGGa                                                                        >  1:1821390/1‑93 (MQ=255)
                  gAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGaaa                                                                      >  1:5454009/1‑93 (MQ=255)
                  gAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGaaa                                                                      <  2:1433200/93‑1 (MQ=255)
                   aaaTGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAAt                                                                     >  1:1264252/1‑93 (MQ=255)
                      tGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCCTCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGa                                                                  >  2:5474110/1‑93 (MQ=255)
                      tGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGa                                                                  >  1:3630394/1‑93 (MQ=255)
                         tAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGc                                                               >  1:2541445/1‑93 (MQ=255)
                          aaTTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGcc                                                              >  1:2673067/1‑93 (MQ=255)
                           aTTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCg                                                             >  1:6122839/1‑93 (MQ=255)
                            ttGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGa                                                            >  1:5728238/1‑93 (MQ=255)
                             tGCTCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTCCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGaa                                                           <  1:2740708/93‑1 (MQ=255)
                                gcCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTa                                                        <  2:5644729/93‑1 (MQ=255)
                                gcCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTa                                                        <  2:73061/93‑1 (MQ=255)
                                gcCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTa                                                        <  1:5250304/93‑1 (MQ=255)
                                 ccGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAg                                                       <  1:4779179/93‑1 (MQ=255)
                                  cGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGc                                                      >  2:5164639/1‑93 (MQ=255)
                                   gATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGGCACCGCGTCCTGAGTGACATCGACGCCGAAGTAGCt                                                     >  1:6256853/1‑93 (MQ=255)
                                   gATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCt                                                     >  1:5140833/1‑93 (MQ=255)
                                      aaTGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTcc                                                  <  2:2543398/93‑1 (MQ=255)
                                       aTGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTccc                                                 >  1:1917108/1‑93 (MQ=255)
                                       aTGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTccc                                                 <  2:6248764/93‑1 (MQ=255)
                                       aTGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTccc                                                 >  2:3408318/1‑93 (MQ=255)
                                         gCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCa                                               >  1:83636/1‑93 (MQ=255)
                                         gCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCa                                               <  1:5956918/93‑1 (MQ=255)
                                           tGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAgg                                             >  2:4562241/1‑93 (MQ=255)
                                            ggTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGt                                            <  2:3740706/93‑1 (MQ=255)
                                            ggTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGt                                            <  2:592889/93‑1 (MQ=255)
                                               aTCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCAt                                         >  2:2025677/1‑93 (MQ=255)
                                                tCGAGGGTTTTAATCCCGGCCATCATTGGCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCAtt                                        >  1:2760536/1‑93 (MQ=255)
                                                 cGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTc                                       >  2:4541967/1‑93 (MQ=255)
                                                  gAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTcc                                      >  1:335853/1‑93 (MQ=255)
                                                   aGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTtcc                                     >  2:398/1‑93 (MQ=255)
                                                   aGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTccc                                     >  1:1537683/1‑93 (MQ=255)
                                                   aGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTccc                                     >  2:1361608/1‑93 (MQ=255)
                                                   aGGGATTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTccc                                     >  1:880505/1‑93 (MQ=255)
                                                    gggTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCa                                    >  1:4064506/1‑93 (MQ=255)
                                                     ggTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCAt                                   >  2:3683686/1‑93 (MQ=255)
                                                      gTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATc                                  <  2:5256760/93‑1 (MQ=255)
                                                        tttAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATcgc                                <  2:5211150/93‑1 (MQ=255)
                                                        tttAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATcgc                                >  1:4429719/1‑93 (MQ=255)
                                                         ttAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATcgcg                               >  1:5204101/1‑93 (MQ=255)
                                                          tAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGt                              >  1:1696200/1‑93 (MQ=255)
                                                          tAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGt                              >  1:396366/1‑93 (MQ=255)
                                                           aaTCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGtt                             >  1:4911593/1‑93 (MQ=255)
                                                            aTCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtg                            >  2:2953685/1‑93 (MQ=255)
                                                             tCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtga                           >  2:5843171/1‑93 (MQ=255)
                                                               ccGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatg                         >  1:1889340/1‑93 (MQ=255)
                                                               ccGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatg                         >  1:3618373/1‑93 (MQ=255)
                                                                cGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatga                        >  2:289102/1‑93 (MQ=255)
                                                                cGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatga                        >  1:3316754/1‑93 (MQ=255)
                                                                cGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatga                        >  2:4941131/1‑93 (MQ=255)
                                                                cGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatga                        <  1:2523857/93‑1 (MQ=255)
                                                                  gCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGaaa                      <  2:2222910/93‑1 (MQ=255)
                                                                   ccATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAt                     <  1:3057975/93‑1 (MQ=255)
                                                                   ccATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAt                     <  1:2944304/93‑1 (MQ=255)
                                                                   ccATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAt                     >  2:2291029/1‑93 (MQ=255)
                                                                   ccATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAt                     <  1:112063/93‑1 (MQ=255)
                                                                    catcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATa                    >  2:3256612/1‑93 (MQ=255)
                                                                    catcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATa                    >  2:3061849/1‑93 (MQ=255)
                                                                    catcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATa                    <  2:1938843/93‑1 (MQ=255)
                                                                     atcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAg                   >  2:3935794/1‑93 (MQ=255)
                                                                      tcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGt                  >  1:2015894/1‑93 (MQ=255)
                                                                      tcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGt                  >  1:4327800/1‑93 (MQ=255)
                                                                       catTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGtt                 >  2:3834029/1‑93 (MQ=255)
                                                                        atTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTc                >  2:350769/1‑93 (MQ=255)
                                                                        atTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTc                <  2:4704976/93‑1 (MQ=255)
                                                                         ttGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTcc               <  2:3352684/93‑1 (MQ=255)
                                                                         ttGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTcc               <  2:1586923/93‑1 (MQ=255)
                                                                          tGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCa              <  2:4282553/93‑1 (MQ=255)
                                                                          tGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCa              <  1:5333919/93‑1 (MQ=255)
                                                                           ttCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAg             <  2:3000018/92‑1 (MQ=255)
                                                                              aGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTc          <  1:5858207/93‑1 (MQ=255)
                                                                              aGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTc          <  1:3933884/93‑1 (MQ=255)
                                                                                  cGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGa      <  2:55761/93‑1 (MQ=255)
                                                                                  cGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGa      <  2:1315170/93‑1 (MQ=255)
                                                                                   gCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGaa     >  2:273983/1‑93 (MQ=255)
                                                                                   gCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGaa     >  1:1449977/1‑93 (MQ=255)
                                                                                    cTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGaaa    <  2:2985258/93‑1 (MQ=255)
                                                                                    cTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGaaa    >  1:3979828/1‑93 (MQ=255)
                                                                                     tACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAc   >  1:4473693/1‑93 (MQ=255)
                                                                                         |                                                                                         
AGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACT  >  NC_000913/3860773‑3860951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCACC  >  NC_000913/3860769‑3860955
                                                                                             |                                                                                             
ATGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCC                                                                                               <  SRR4302533.2107778/94‑1 (MQ=60)
   CAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCC                                                                                            >  SRR4302533.4263139/1‑94 (MQ=60)
    AGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCA                                                                                           >  SRR4302533.5928965/1‑94 (MQ=60)
    AGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCA                                                                                           >  SRR4302533.4857501/1‑94 (MQ=60)
     GCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCAC                                                                                          <  SRR4302533.793782/94‑1 (MQ=60)
      CGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACC                                                                                         >  SRR4302533.1229169/1‑94 (MQ=60)
      CGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACC                                                                                         <  SRR4302533.2415527/94‑1 (MQ=60)
       GCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCG                                                                                        >  SRR4302533.1019794/1‑94 (MQ=60)
       GCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCG                                                                                        >  SRR4302533.3330907/1‑94 (MQ=60)
       GCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCG                                                                                        >  SRR4302533.4708463/1‑94 (MQ=60)
       GCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGGTTTAATCCCGGCCATCATTGTCAGACCGCCACCCGCCACCG                                                                                        >  SRR4302533.2555692/1‑94 (MQ=60)
        CCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGC                                                                                       >  SRR4302533.2893410/1‑94 (MQ=60)
        CCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGC                                                                                       >  SRR4302533.371734/1‑94 (MQ=60)
        CCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGGTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGC                                                                                       >  SRR4302533.2893411/1‑94 (MQ=60)
         CGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCG                                                                                      <  SRR4302533.475848/94‑1 (MQ=60)
         CGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCG                                                                                      >  SRR4302533.604355/1‑94 (MQ=60)
          GTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGT                                                                                     >  SRR4302533.2836285/1‑94 (MQ=60)
          GTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGT                                                                                     >  SRR4302533.3705510/1‑94 (MQ=60)
          GTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCAGCATTGTCAGACCGCTACCCGCCACCGCGT                                                                                     >  SRR4302533.6344073/1‑94 (MQ=60)
           TCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTC                                                                                    >  SRR4302533.660016/1‑94 (MQ=60)
             CCAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCT                                                                                  <  SRR4302533.2419145/94‑1 (MQ=60)
             ACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCT                                                                                  >  SRR4302533.180593/1‑94 (MQ=60)
             ACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCT                                                                                  <  SRR4302533.4160193/94‑1 (MQ=60)
             ACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCT                                                                                  <  SRR4302533.1355106/94‑1 (MQ=60)
             ACAATGCCGGAAATGATAATTGAGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCT                                                                                  >  SRR4302533.2420044/1‑94 (MQ=60)
                 TGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGT                                                                              >  SRR4302533.4664710/1‑94 (MQ=60)
                   CCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGA                                                                            <  SRR4302533.2232698/94‑1 (MQ=60)
                   CCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATACCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGGGA                                                                            >  SRR4302533.1832515/1‑94 (MQ=60)
                    CGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAA                                                                           >  SRR4302533.3342563/1‑94 (MQ=60)
                     GGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAT                                                                          >  SRR4302533.3866513/1‑94 (MQ=60)
                     GGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAA                                                                          >  SRR4302533.5486861/1‑94 (MQ=60)
                     GGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAA                                                                          >  SRR4302533.3575442/1‑94 (MQ=60)
                      GAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAAT                                                                         >  SRR4302533.1271818/1‑94 (MQ=60)
                       AAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATC                                                                        <  SRR4302533.147767/94‑1 (MQ=60)
                         ATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGA                                                                      >  SRR4302533.3652729/1‑94 (MQ=60)
                         ATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGA                                                                      >  SRR4302533.5177774/1‑94 (MQ=60)
                          TGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAC                                                                     <  SRR4302533.2759439/94‑1 (MQ=60)
                           GATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACG                                                                    <  SRR4302533.3857576/94‑1 (MQ=60)
                           GATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGACCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACG                                                                    <  SRR4302533.3649825/94‑1 (MQ=60)
                            ATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGC                                                                   >  SRR4302533.2557091/1‑94 (MQ=60)
                             TAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCC                                                                  <  SRR4302533.5312437/94‑1 (MQ=60)
                             TAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCC                                                                  <  SRR4302533.1004016/94‑1 (MQ=60)
                             TAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCC                                                                  >  SRR4302533.2689464/1‑94 (MQ=60)
                              AATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCG                                                                 >  SRR4302533.190607/1‑94 (MQ=60)
                              AATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCG                                                                 >  SRR4302533.1360863/1‑94 (MQ=60)
                              AATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCG                                                                 >  SRR4302533.6159754/1‑94 (MQ=60)
                               ATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGA                                                                >  SRR4302533.5762830/1‑94 (MQ=60)
                                 TGCTCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTCCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAG                                                              <  SRR4302533.2757515/94‑1 (MQ=60)
                                 TGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAG                                                              <  SRR4302533.2757514/94‑1 (MQ=60)
                                 TGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAG                                                              >  SRR4302533.1890149/1‑94 (MQ=60)
                                  GCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTCCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGT                                                             <  SRR4302533.755581/94‑1 (MQ=60)
                                    GCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAG                                                           <  SRR4302533.5281857/94‑1 (MQ=60)
                                     CCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTCCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGC                                                          <  SRR4302533.620479/94‑1 (MQ=60)
                                     CCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGC                                                          <  SRR4302533.4808129/94‑1 (MQ=60)
                                     CCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGC                                                          >  SRR4302533.2682626/1‑94 (MQ=60)
                                      CGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGGCACCGCGTCCTGAGTGACATCGACGCCGAAGTAGCT                                                         >  SRR4302533.6294271/1‑94 (MQ=60)
                                      CGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCT                                                         >  SRR4302533.5171903/1‑94 (MQ=60)
                                         TAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCC                                                      <  SRR4302533.4701179/94‑1 (MQ=60)
                                          AATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCC                                                     >  SRR4302533.1928812/1‑94 (MQ=60)
                                          AATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCC                                                     >  SRR4302533.2669415/1‑94 (MQ=60)
                                           ATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCC                                                    <  SRR4302533.2001687/94‑1 (MQ=60)
                                           ATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCC                                                    >  SRR4302533.3048938/1‑94 (MQ=60)
                                            TGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCA                                                   <  SRR4302533.1055428/94‑1 (MQ=60)
                                            TGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCA                                                   >  SRR4302533.84169/1‑94 (MQ=60)
                                             GCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAG                                                  <  SRR4302533.5992952/94‑1 (MQ=60)
                                               TGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGT                                                >  SRR4302533.4379202/1‑94 (MQ=60)
                                                GGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTC                                               >  SRR4302533.1667817/1‑94 (MQ=60)
                                                   ATCGAGGGTTTTAATCCCGGCCATCATTGGCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATT                                            >  SRR4302533.2777455/1‑94 (MQ=60)
                                                     CGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCC                                          >  SRR4302533.337906/1‑94 (MQ=60)
                                                      GAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCC                                         >  SRR4302533.1546921/1‑94 (MQ=60)
                                                      GAGGGATTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCC                                         >  SRR4302533.885675/1‑94 (MQ=60)
                                                       AGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACTGCGTCCTGAGTGAAATCGAAGCCGAAGTAGCTTCCCCATGTCATTCCCA                                        >  SRR4302533.5652718/1‑94 (MQ=60)
                                                       AGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCA                                        >  SRR4302533.4089245/1‑94 (MQ=60)
                                                       AGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCA                                        >  SRR4302533.5261200/1‑94 (MQ=60)
                                                         GGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATC                                      <  SRR4302533.5805215/94‑1 (MQ=60)
                                                          GTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCG                                     >  SRR4302533.4351762/1‑94 (MQ=60)
                                                          GTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCG                                     <  SRR4302533.4546794/94‑1 (MQ=60)
                                                           TTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGC                                    >  SRR4302533.4456498/1‑94 (MQ=60)
                                                            TTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCG                                   >  SRR4302533.5235459/1‑94 (MQ=60)
                                                             TTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGT                                  >  SRR4302533.398765/1‑94 (MQ=60)
                                                             TTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGT                                  >  SRR4302533.1706473/1‑94 (MQ=60)
                                                              TAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTT                                 >  SRR4302533.4941346/1‑94 (MQ=60)
                                                              TAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTT                                 >  SRR4302533.5315244/1‑94 (MQ=60)
                                                               AATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTG                                >  SRR4302533.5904326/1‑94 (MQ=60)
                                                                  CCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATG                             >  SRR4302533.1900880/1‑94 (MQ=60)
                                                                  CCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATG                             >  SRR4302533.3640629/1‑94 (MQ=60)
                                                                  CCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATG                             >  SRR4302533.546143/1‑94 (MQ=60)
                                                                   CCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGA                            >  SRR4302533.3337237/1‑94 (MQ=60)
                                                                    CGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAA                           <  SRR4302533.2539403/94‑1 (MQ=60)
                                                                     GGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAA                          >  SRR4302533.2400834/1‑94 (MQ=60)
                                                                       CCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATA                        <  SRR4302533.3076739/94‑1 (MQ=60)
                                                                       CCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATA                        <  SRR4302533.45715/94‑1 (MQ=60)
                                                                       CCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATA                        <  SRR4302533.1894523/94‑1 (MQ=60)
                                                                       CCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATA                        <  SRR4302533.2962273/94‑1 (MQ=60)
                                                                       CCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATA                        <  SRR4302533.112770/94‑1 (MQ=60)
                                                                       CCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATA                        <  SRR4302533.3992213/94‑1 (MQ=60)
                                                                        CATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAG                       <  SRR4302533.5027867/94‑1 (MQ=60)
                                                                        CAGCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCGGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAG                       <  SRR4302533.5027690/94‑1 (MQ=60)
                                                                         ATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGT                      >  SRR4302533.2028315/1‑94 (MQ=60)
                                                                         ATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGT                      >  SRR4302533.4353870/1‑94 (MQ=60)
                                                                           CATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTC                    >  SRR4302533.3975945/1‑94 (MQ=60)
                                                                           CATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTC                    >  SRR4302533.4239609/1‑94 (MQ=60)
                                                                            ATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCC                   >  SRR4302533.2065780/1‑94 (MQ=60)
                                                                              TGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAG                 <  SRR4302533.5365888/94‑1 (MQ=60)
                                                                                  AGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCA             <  SRR4302533.5893622/94‑1 (MQ=60)
                                                                                  AGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCA             <  SRR4302533.3957895/94‑1 (MQ=60)
                                                                                  AGACCGCTACCCGCCACCGCGTCCTGAGAGAAATAGACGCCGAAGCAGCTTCCCCAGGTCATTCCCATCGCGTCGATGAAATAGTTCCCGGTCA             >  SRR4302533.343637/1‑94 (MQ=60)
                                                                                    ACCGCTGCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGG           <  SRR4302533.4008184/94‑1 (MQ=60)
                                                                                      CGCTCCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAA         <  SRR4302533.2805846/94‑1 (MQ=60)
                                                                                      CGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAA         >  SRR4302533.1458727/1‑94 (MQ=60)
                                                                                      CGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAA         <  SRR4302533.1208797/94‑1 (MQ=60)
                                                                                      CGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAA         >  SRR4302533.716095/1‑94 (MQ=60)
                                                                                       GCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAA        >  SRR4302533.4004056/1‑94 (MQ=60)
                                                                                        CTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAC       >  SRR4302533.4500750/1‑94 (MQ=60)
                                                                                         TACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACT      <  SRR4302533.4486640/94‑1 (MQ=60)
                                                                                         TACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACT      >  SRR4302533.827633/1‑94 (MQ=60)
                                                                                         TACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACT      <  SRR4302533.841449/94‑1 (MQ=60)
                                                                                             CGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCACC  <  SRR4302533.4372687/94‑1 (MQ=60)
                                                                                             CGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCACC  <  SRR4302533.1389632/94‑1 (MQ=60)
                                                                                             CGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCACC  >  SRR4302533.5562672/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCACC  >  NC_000913/3860769‑3860955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑