Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,888,869 |
G→A |
A335A (GCG→GCA) |
tnaB → |
low affinity tryptophan permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,888,869 | 0 | G | A | 100.0%
| 885.5
/ NA
| 240 | A335A (GCG→GCA) | tnaB | low affinity tryptophan permease |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (128/112); total (128/112) |
Only 100 of 254 total aligned reads displayed.
GTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCGTTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGC > NC_000913/3888779‑3888958
|
gttgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCatt < 1:4937197/93‑1 (MQ=255)
ttgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCTGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattg < 1:1607412/93‑1 (MQ=255)
ttgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattg < 2:2963639/93‑1 (MQ=255)
tgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattgt > 1:409805/1‑93 (MQ=255)
tgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattgt < 1:4775804/93‑1 (MQ=255)
aTTATCTGGCGTACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATc < 1:245756/93‑1 (MQ=255)
aTTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATc > 1:4709195/1‑93 (MQ=255)
aTTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATc > 2:3647484/1‑93 (MQ=255)
ttATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCt > 2:4324572/1‑93 (MQ=255)
aTCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGa < 2:3506509/93‑1 (MQ=255)
aTCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGa < 2:2899561/93‑1 (MQ=255)
aTCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGa < 1:3447215/93‑1 (MQ=255)
aTCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGAGCTGTTAACCTTCCTGCCACCTGCATTTTTGTATCTGa > 2:5038408/1‑93 (MQ=255)
cTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATc < 2:5323317/93‑1 (MQ=255)
tGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGGGGTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGAtat > 1:5210738/1‑91 (MQ=255)
gCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTc < 1:3655113/93‑1 (MQ=255)
cGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTcc < 2:3295493/93‑1 (MQ=255)
cGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTcc < 2:5429705/93‑1 (MQ=255)
ggACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTccc < 2:357233/93‑1 (MQ=255)
ggACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTccc < 2:3105910/93‑1 (MQ=255)
ggACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTccc < 1:338030/93‑1 (MQ=255)
ggACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGGTGTATCTGATCTTtcc > 1:289122/1‑93 (MQ=255)
gACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCg > 2:4957124/1‑93 (MQ=255)
cTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAc < 2:2665328/93‑1 (MQ=255)
cTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAc < 2:2445730/93‑1 (MQ=255)
cTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAc < 1:3872164/93‑1 (MQ=255)
tGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACg > 2:2859812/1‑93 (MQ=255)
tGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACg > 2:4940669/1‑93 (MQ=255)
tttAAGATTGATACCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGc < 2:1447334/93‑1 (MQ=255)
aaGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCttt < 2:4155263/93‑1 (MQ=255)
aGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCttta < 2:180958/93‑1 (MQ=255)
aGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCttta < 2:4800094/93‑1 (MQ=255)
gATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttat > 2:5864730/1‑93 (MQ=255)
gATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttat > 2:462996/1‑93 (MQ=255)
aTTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttatt > 1:305109/1‑93 (MQ=255)
aTTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttatt > 2:2784434/1‑93 (MQ=255)
ttGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATTTTCCCGAACGGCtttattt > 2:2992122/1‑93 (MQ=255)
ttGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACTGctttcttt > 2:575573/1‑93 (MQ=255)
ttGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttattt > 1:2841446/1‑93 (MQ=255)
gATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTAc < 2:4709165/93‑1 (MQ=255)
tAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACgg > 2:4108235/1‑93 (MQ=255)
tAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACgg < 1:3586734/93‑1 (MQ=255)
tAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACgg > 1:6026454/1‑93 (MQ=255)
tAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACgg > 1:435982/1‑93 (MQ=255)
aaCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACggg < 2:1087644/93‑1 (MQ=255)
aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa < 1:1497566/93‑1 (MQ=255)
aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa < 1:1462676/93‑1 (MQ=255)
aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa > 1:1169067/1‑93 (MQ=255)
aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa > 1:5553360/1‑93 (MQ=255)
cTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGAt < 2:1531225/93‑1 (MQ=255)
tCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATc < 2:1945734/93‑1 (MQ=255)
cccACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcg > 1:6185094/1‑93 (MQ=255)
ccACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcgg < 1:5163661/93‑1 (MQ=255)
cACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcggc < 1:800580/93‑1 (MQ=255)
cACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcggc > 1:2550171/1‑93 (MQ=255)
cggcggGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcggcgg < 2:5813018/93‑1 (MQ=255)
ggcgggcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGt < 1:1765346/93‑1 (MQ=255)
ggtcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGcc < 2:5159175/90‑1 (MQ=255)
ggcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCg > 2:4448299/1‑93 (MQ=255)
gcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCgg > 1:2742990/1‑93 (MQ=255)
cgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCggg < 2:599273/93‑1 (MQ=255)
gTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTATGGTATCGTCGGTGCCgggt > 2:312596/1‑92 (MQ=255)
gTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGc > 2:1960905/1‑93 (MQ=255)
tttCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCt > 1:5939277/1‑93 (MQ=255)
tttCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCt < 2:3331125/93‑1 (MQ=255)
tCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCtgg > 1:2366437/1‑92 (MQ=255)
tCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCtgg > 2:873062/1‑92 (MQ=255)
cAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCtgtg < 2:2109631/93‑1 (MQ=255)
aaaaCCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTgc > 1:3290053/1‑93 (MQ=255)
aaaCCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTgcg > 2:6243495/1‑93 (MQ=255)
aCCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGcc > 1:1668414/1‑93 (MQ=255)
ccGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGcca < 1:11135/93‑1 (MQ=255)
tGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGccacca > 2:5568404/1‑93 (MQ=255)
tGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGccacca > 2:3692271/1‑93 (MQ=255)
tGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGGGAGCCACCATCt > 2:2679209/1‑93 (MQ=255)
gTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTg < 1:4755450/93‑1 (MQ=255)
ttAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgg > 2:3895049/1‑93 (MQ=255)
ttAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgg > 1:1007755/1‑93 (MQ=255)
tgaaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgg > 2:6207000/3‑93 (MQ=255)
tAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTggg < 1:1022813/93‑1 (MQ=255)
tAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTggg < 2:1296686/93‑1 (MQ=255)
aaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgggg > 2:1555950/1‑92 (MQ=255)
aaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGc > 2:2250456/1‑93 (MQ=255)
aaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGc < 2:1455141/93‑1 (MQ=255)
aaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGc > 1:3838185/1‑93 (MQ=255)
aaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGc > 2:5593608/1‑93 (MQ=255)
aCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCg < 1:1821320/93‑1 (MQ=255)
aCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCg < 1:2929990/93‑1 (MQ=255)
cTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGt > 1:5357722/1‑93 (MQ=255)
ttCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTc > 2:5487016/1‑93 (MQ=255)
ttCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTc > 1:1871299/1‑93 (MQ=255)
ccTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCat < 1:655179/93‑1 (MQ=255)
cTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCatt < 2:1651769/93‑1 (MQ=255)
tGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCatta < 1:5304114/93‑1 (MQ=255)
tGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCatta < 2:2548631/93‑1 (MQ=255)
ccACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCattatt < 2:1608259/93‑1 (MQ=255)
ccACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCattatt > 1:203534/1‑93 (MQ=255)
cccTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTcc < 2:110939/92‑1 (MQ=255)
aCCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTcc < 1:3686799/93‑1 (MQ=255)
tGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGc < 2:4393962/93‑1 (MQ=255)
|
GTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCGTTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGC > NC_000913/3888779‑3888958
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGGTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCGTTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAGTG > NC_000913/3888776‑3888962
|
GGGGTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCA > SRR4302533.5190487/1‑94 (MQ=60)
GGGTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCAT > SRR4302533.5404890/1‑94 (MQ=60)
GGTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATT > SRR4302533.3037297/1‑94 (MQ=60)
GTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTG < SRR4302533.696466/94‑1 (MQ=60)
GTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTG < SRR4302533.4967088/94‑1 (MQ=60)
TTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCTGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGT < SRR4302533.1617166/94‑1 (MQ=60)
TTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGT > SRR4302533.412262/1‑94 (MQ=60)
TGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTT < SRR4302533.4804738/94‑1 (MQ=60)
GTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGGTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCCTTTTTG > SRR4302533.2941861/1‑94 (MQ=60)
CGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTAT < SRR4302533.3499815/94‑1 (MQ=60)
GATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATC > SRR4302533.4737737/1‑94 (MQ=60)
ATTATCTGGCGTACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCT < SRR4302533.247277/94‑1 (MQ=60)
ATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCT > SRR4302533.6108647/1‑94 (MQ=60)
TTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTG < SRR4302533.4804603/94‑1 (MQ=60)
TTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTG > SRR4302533.2155409/1‑94 (MQ=60)
ATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGAT < SRR4302533.5202176/94‑1 (MQ=60)
ATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGAT < SRR4302533.3468501/94‑1 (MQ=60)
CTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGGGGTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATAT > SRR4302533.5242123/1‑94 (MQ=60)
CTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCT > SRR4302533.5673700/1‑94 (MQ=60)
CTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCT > SRR4302533.4759891/1‑94 (MQ=60)
TGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTT < SRR4302533.4692495/94‑1 (MQ=60)
GCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCC < SRR4302533.3677584/94‑1 (MQ=60)
CGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCC < SRR4302533.5071280/94‑1 (MQ=60)
CGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGGTGTATCTGATCTTTCC > SRR4302533.290885/1‑94 (MQ=60)
GGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCG < SRR4302533.3351086/94‑1 (MQ=60)
GGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCG < SRR4302533.340093/94‑1 (MQ=60)
ACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAA > SRR4302533.1876381/1‑94 (MQ=60)
ACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAA < SRR4302533.3103429/94‑1 (MQ=60)
ACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAA < SRR4302533.3973192/94‑1 (MQ=60)
CCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAC < SRR4302533.1841132/94‑1 (MQ=60)
CTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACG < SRR4302533.5285799/94‑1 (MQ=60)
CTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACG < SRR4302533.3895798/94‑1 (MQ=60)
AGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTAT < SRR4302533.1494794/94‑1 (MQ=60)
GATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATT > SRR4302533.306973/1‑94 (MQ=60)
ATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTT > SRR4302533.2027403/1‑94 (MQ=60)
ATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTT > SRR4302533.2858932/1‑94 (MQ=60)
ATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTACTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAAGGCTTTATTT > SRR4302533.2858934/1‑94 (MQ=60)
TTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTA > SRR4302533.1652827/1‑94 (MQ=60)
ATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGG > SRR4302533.438578/1‑94 (MQ=60)
ATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGG > SRR4302533.6062972/1‑94 (MQ=60)
TAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGG < SRR4302533.3608823/94‑1 (MQ=60)
AACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGA > SRR4302533.2404782/1‑94 (MQ=60)
AACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGA > SRR4302533.1176082/1‑94 (MQ=60)
AACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGA > SRR4302533.5148595/1‑94 (MQ=60)
AACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGA > SRR4302533.5586897/1‑94 (MQ=60)
ACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGAT < SRR4302533.1506587/94‑1 (MQ=60)
ACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGAT < SRR4302533.1471493/94‑1 (MQ=60)
ACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGAT > SRR4302533.2968375/1‑94 (MQ=60)
CTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATC < SRR4302533.4530502/94‑1 (MQ=60)
TCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCG > SRR4302533.6222226/1‑94 (MQ=60)
CCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCG < SRR4302533.2303798/94‑1 (MQ=60)
CCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGC < SRR4302533.5194840/94‑1 (MQ=60)
CCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGC > SRR4302533.2565867/1‑94 (MQ=60)
CACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCG > SRR4302533.3926729/1‑94 (MQ=60)
CACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCG < SRR4302533.805291/94‑1 (MQ=60)
ACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGG < SRR4302533.1776678/94‑1 (MQ=60)
ACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCAGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGG > SRR4302533.3396636/1‑94 (MQ=60)
GGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTG < SRR4302533.1776097/94‑1 (MQ=60)
GGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTG > SRR4302533.1431405/1‑94 (MQ=60)
GGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTG < SRR4302533.3691293/94‑1 (MQ=60)
CGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCC < SRR4302533.3683466/94‑1 (MQ=60)
GGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCG > SRR4302533.1060301/1‑94 (MQ=60)
GGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGG > SRR4302533.2759808/1‑94 (MQ=60)
GCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGG < SRR4302533.5571880/94‑1 (MQ=60)
GCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGG > SRR4302533.536133/1‑94 (MQ=60)
GCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGG > SRR4302533.3422698/1‑94 (MQ=60)
CGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGC > SRR4302533.1018215/1‑94 (MQ=60)
GTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCT > SRR4302533.5975188/1‑94 (MQ=60)
GTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGATTTATTTACGGGATCGGCGGTGCCGGGCG > SRR4302533.1710579/1‑94 (MQ=60)
TTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGG > SRR4302533.2381073/1‑94 (MQ=60)
CAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGC > SRR4302533.3310365/1‑94 (MQ=60)
AAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCG > SRR4302533.4841919/1‑94 (MQ=60)
AACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCC > SRR4302533.2860000/1‑94 (MQ=60)
AACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCC > SRR4302533.1678492/1‑94 (MQ=60)
CCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCAC < SRR4302533.11226/94‑1 (MQ=60)
GTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCA > SRR4302533.2591970/1‑94 (MQ=60)
GCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATC > SRR4302533.6320656/1‑94 (MQ=60)
CTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCT > SRR4302533.3655969/1‑94 (MQ=60)
CTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCT < SRR4302533.3469595/94‑1 (MQ=60)
GTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGG > SRR4302533.1013649/1‑94 (MQ=60)
GTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGG < SRR4302533.4784307/94‑1 (MQ=60)
GTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGG > SRR4302533.4789426/1‑94 (MQ=60)
TTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGG < SRR4302533.3835338/94‑1 (MQ=60)
TAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGC < SRR4302533.1028825/94‑1 (MQ=60)
TAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGC < SRR4302533.1550139/94‑1 (MQ=60)
TAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGC > SRR4302533.3861634/1‑94 (MQ=60)
ACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGG > SRR4302533.1057040/1‑94 (MQ=60)
ACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGG < SRR4302533.1832445/94‑1 (MQ=60)
ACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGG < SRR4302533.2947912/94‑1 (MQ=60)
CCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGT > SRR4302533.5389882/1‑94 (MQ=60)
CTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGGGCCACCATCTGGGCGGTC > SRR4302533.1135366/1‑94 (MQ=60)
CTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTC > SRR4302533.5776293/1‑94 (MQ=60)
CTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTC > SRR4302533.1882707/1‑94 (MQ=60)
CTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTC > SRR4302533.685752/1‑94 (MQ=60)
CTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTC > SRR4302533.5991588/1‑94 (MQ=60)
TTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCA < SRR4302533.3884507/94‑1 (MQ=60)
CCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATT < SRR4302533.659047/94‑1 (MQ=60)
CTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTA < SRR4302533.2555681/94‑1 (MQ=60)
TGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTAT < SRR4302533.5335896/94‑1 (MQ=60)
TGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATAGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTAT < SRR4302533.2759833/94‑1 (MQ=60)
GCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATT < SRR4302533.6192891/94‑1 (MQ=60)
GCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATT > SRR4302533.3760117/1‑94 (MQ=60)
GCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATT > SRR4302533.204829/1‑94 (MQ=60)
CCACCTGCATTGTTGTATCTGATCTTCCCGAGCGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTC < SRR4302533.5396318/94‑1 (MQ=60)
CCACCTGCATTGTTGTATCTGATCTTCCCGAGCGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTC > SRR4302533.4385486/1‑94 (MQ=60)
CACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCC > SRR4302533.130859/1‑94 (MQ=60)
CACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGAGCGGTCATTATTCC > SRR4302533.168652/1‑94 (MQ=60)
GCCTGCATTGTTGTATCTGATCTTCCCGAGCGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCC < SRR4302533.2604363/94‑1 (MQ=60)
ACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCC < SRR4302533.3709459/94‑1 (MQ=60)
ACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCC > SRR4302533.1542365/1‑94 (MQ=60)
TGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCA < SRR4302533.533040/94‑1 (MQ=60)
TGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCA > SRR4302533.1958929/1‑94 (MQ=60)
TGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCA < SRR4302533.2398852/94‑1 (MQ=60)
TGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCA > SRR4302533.402305/1‑94 (MQ=60)
GCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAG < SRR4302533.3600934/94‑1 (MQ=60)
GCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAG < SRR4302533.6333504/94‑1 (MQ=60)
ATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAGTG < SRR4302533.3862496/94‑1 (MQ=60)
|
GGGGTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCGTTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGCAGTG > NC_000913/3888776‑3888962
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
