Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,892,505	T→C	G75G (GGT→GGC)	yieF →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,892,505	0	T	C	100.0%	883.7 / NA	275	G75G (GGT→GGC)	yieF	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (129/146); total (129/146)

Only 100 of 295 total aligned reads displayed.

CATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGTGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACC  >  NC_000913/3892415‑3892594

cATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGgcgt                                                                                         <  2:4560216/93‑1 (MQ=255)

   tCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCgtggt                                                                                      <  2:25211/93‑1 (MQ=255)

     ccTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGa                                                                                    <  2:3489822/93‑1 (MQ=255)

     ccTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGa                                                                                    <  1:2655381/93‑1 (MQ=255)

      cTTGTATGACGCTGACGTACAGCAGTAAGAAGGTTTTCCAGCAACGGTTGACGCTCTGGCGGCACAGATGCGTCAGGCTGATGGCGTGgagaa                                                                                   >  1:2990459/1‑92 (MQ=255)

      cTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACTGCGTGGTGAt                                                                                   <  2:3854142/93‑1 (MQ=255)

      cTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGAt                                                                                   <  2:2565206/93‑1 (MQ=255)

      cTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGAt                                                                                   >  2:1930760/1‑93 (MQ=255)

      cTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGAt                                                                                   >  2:1301144/1‑93 (MQ=255)

      cTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGAt                                                                                   <  2:526827/93‑1 (MQ=255)

      cTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGAt                                                                                   >  1:5539577/1‑93 (MQ=255)

      cTTGTATGACGCTGACGTACAGCAGGAAGAAGGCTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGAt                                                                                   >  1:6257570/1‑93 (MQ=255)

       ttGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATc                                                                                  <  2:248009/93‑1 (MQ=255)

        tGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCg                                                                                 >  1:5609358/1‑93 (MQ=255)

        tGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCg                                                                                 <  2:1213281/93‑1 (MQ=255)

          tATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTc                                                                               >  1:4464136/1‑93 (MQ=255)

           aTGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCa                                                                              <  1:5260395/93‑1 (MQ=255)

            tGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCAc                                                                             <  2:900106/93‑1 (MQ=255)

            tGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCAc                                                                             >  1:3435752/1‑93 (MQ=255)

              aCGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGc                                                                           <  1:6140684/93‑1 (MQ=255)

                 cTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCgg                                                                        >  2:1766294/1‑93 (MQ=255)

                 cTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCgg                                                                        >  2:1516860/1‑93 (MQ=255)

                  tGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGa                                                                       >  1:3149420/1‑93 (MQ=255)

                  tGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGa                                                                       <  1:2316529/93‑1 (MQ=255)

                   gACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCGCGCCGGaa                                                                      <  2:5987249/93‑1 (MQ=255)

                   gACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGaa                                                                      >  2:4028609/1‑93 (MQ=255)

                   gACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGaa                                                                      >  1:18836/1‑93 (MQ=255)

                   gACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGCCACGCCGGaa                                                                      >  2:63787/1‑93 (MQ=255)

                     cGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAata                                                                    <  2:2083315/93‑1 (MQ=255)

                      gTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAatat                                                                   >  2:41258/1‑93 (MQ=255)

                       tACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAAtata                                                                  >  2:1097164/1‑93 (MQ=255)

                         cagcagGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAac                                                                <  1:3659092/93‑1 (MQ=255)

                         cagcagGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAac                                                                <  2:6196718/93‑1 (MQ=255)

                         cagcagGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAac                                                                >  2:777210/1‑93 (MQ=255)

                             agGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAactact                                                            >  2:2983894/1‑93 (MQ=255)

                             agGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAactact                                                            <  2:4634031/93‑1 (MQ=255)

                              ggAAGAAGGTTTTTCAGCAACGGATGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAActcctc                                                           >  2:551178/1‑93 (MQ=255)

                              ggAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTc                                                           >  1:573252/1‑93 (MQ=255)

                               gaagaaGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCg                                                          <  2:316882/93‑1 (MQ=255)

                               gaagaaGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCg                                                          <  2:557915/93‑1 (MQ=255)

                               gaagaaGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCg                                                          <  1:755986/93‑1 (MQ=255)

                                aagaagGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCgg                                                         <  1:5906456/93‑1 (MQ=255)

                                 agaagGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGt                                                        <  2:4782995/93‑1 (MQ=255)

                                  gaagGTTTTCCAGCAACGGTTGAAGCTCTGGAGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGtc                                                       >  1:1743890/1‑92 (MQ=255)

                                   aagGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTAc                                                      <  2:3341905/93‑1 (MQ=255)

                                     ggTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCg                                                    >  2:3609151/1‑93 (MQ=255)

                                     ggTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCg                                                    <  2:948323/93‑1 (MQ=255)

                                     ggTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCg                                                    <  1:1983603/93‑1 (MQ=255)

                                      gTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGGGATCGTCACGCCGGAATATAACTACTCGGTACCgg                                                   >  2:2634281/1‑93 (MQ=255)

                                       ttttCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCggg                                                  <  1:4226827/93‑1 (MQ=255)

                                         ttCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTg                                                <  1:1316816/93‑1 (MQ=255)

                                         ttCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTg                                                <  2:39715/93‑1 (MQ=255)

                                             aGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCt                                            <  2:4956819/93‑1 (MQ=255)

                                             aGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCt                                            <  2:4218054/93‑1 (MQ=255)

                                              gCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTg                                           >  2:4482866/1‑93 (MQ=255)

                                              gCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTg                                           >  2:4416128/1‑93 (MQ=255)

                                              gCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTg                                           >  2:2172064/1‑93 (MQ=255)

                                              gCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTg                                           <  2:2331596/93‑1 (MQ=255)

                                               cAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGa                                          >  1:1029071/1‑93 (MQ=255)

                                                aaCGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGaa                                         >  2:575059/1‑93 (MQ=255)

                                                  cGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATACCTACTCGGTACCGGGTGGGCTGaaaa                                       >  1:6055345/1‑93 (MQ=255)

                                                    gTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAAt                                     >  2:2371934/1‑93 (MQ=255)

                                                     ttGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATg                                    >  1:3423777/1‑93 (MQ=255)

                                                     ttGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATg                                    >  2:3393426/1‑93 (MQ=255)

                                                       gAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGcc                                  >  1:3592210/1‑93 (MQ=255)

                                                       gAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGcc                                  >  2:3707662/1‑93 (MQ=255)

                                                       gAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGGGATCGTCACGCCGGAATACAACTACTCGGTACCGGGGGGGCTGAAAAATGcc                                  >  2:841357/1‑93 (MQ=255)

                                                        aaGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCa                                 >  1:1115270/1‑93 (MQ=255)

                                                        aaGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCa                                 >  1:370608/1‑93 (MQ=255)

                                                        aaGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCa                                 <  1:4482130/93‑1 (MQ=255)

                                                        aaGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCa                                 >  1:4934946/1‑93 (MQ=255)

                                                         aGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCAt                                >  1:3512078/1‑93 (MQ=255)

                                                            tctGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGa                             >  1:5455515/1‑93 (MQ=255)

                                                             ctGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGAc                            <  1:3270411/93‑1 (MQ=255)

                                                             ctGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGAc                            <  1:861680/93‑1 (MQ=255)

                                                              tGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACt                           <  2:2839030/93‑1 (MQ=255)

                                                              tGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACt                           >  1:2808677/1‑93 (MQ=255)

                                                              tGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACt                           <  2:437707/93‑1 (MQ=255)

                                                                 cGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGc                        <  1:4360490/93‑1 (MQ=255)

                                                                  ggAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTgggt                       >  1:4666258/1‑91 (MQ=255)

                                                                     aCAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTc                    >  1:2936496/1‑93 (MQ=255)

                                                                     aCAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTc                    >  1:6118939/1‑93 (MQ=255)

                                                                     aCAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTc                    <  2:2734794/93‑1 (MQ=255)

                                                                         aTCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGc                >  2:4853608/1‑93 (MQ=255)

                                                                          tCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGcc               >  2:3637423/1‑93 (MQ=255)

                                                                          tCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGcc               >  2:5368762/1‑93 (MQ=255)

                                                                          tCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGcc               >  1:2236984/1‑93 (MQ=255)

                                                                            cGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTg             >  1:3932038/1‑93 (MQ=255)

                                                                            cGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTg             <  1:4116224/93‑1 (MQ=255)

                                                                             gTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGc            <  1:2508504/93‑1 (MQ=255)

                                                                              tCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGcc           <  2:1129177/93‑1 (MQ=255)

                                                                              tCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGcc           >  2:2599259/1‑93 (MQ=255)

                                                                                 ggCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGa        <  1:1555403/93‑1 (MQ=255)

                                                                                  gCTGACGGCGTGGTTATCGTCACGCCGGAATATAACTACACGGTACCGGGTGGGCTAAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGAt       <  1:1442248/93‑1 (MQ=255)

                                                                                  gCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGAt       <  2:5427663/93‑1 (MQ=255)

                                                                                  gCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGAt       >  2:6062489/1‑93 (MQ=255)

                                                                                  gCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTCGCTTTCCCGCCTGCCGGAt       >  2:51959/1‑93 (MQ=255)

                                                                                      aCGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAAc   <  1:511693/93‑1 (MQ=255)

                                                                                      aCGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAAc   <  1:3759839/93‑1 (MQ=255)

                                                                                       cGGCGTGGTGATCGTCACGCCGAAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAAcc  <  1:3234432/93‑1 (MQ=255)

CATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGTGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACC  >  NC_000913/3892415‑3892594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGACATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGTGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACCGCTG  >  NC_000913/3892412‑3892598

CGACATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGC                                                                                               <  SRR4302533.2324112/94‑1 (MQ=60)

CGACATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGC                                                                                               <  SRR4302533.5798727/94‑1 (MQ=60)

CGACATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGC                                                                                               <  SRR4302533.5465436/94‑1 (MQ=60)

 GACATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCG                                                                                              >  SRR4302533.2787897/1‑94 (MQ=60)

 CACATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGTTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCG                                                                                              <  SRR4302533.1315827/94‑1 (MQ=60)

   CATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTG                                                                                            <  SRR4302533.5379766/94‑1 (MQ=60)

    ATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGG                                                                                           >  SRR4302533.1042775/1‑94 (MQ=60)

    ATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGG                                                                                           <  SRR4302533.2971734/94‑1 (MQ=60)

    ATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGG                                                                                           >  SRR4302533.6260263/1‑94 (MQ=60)

    ATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGG                                                                                           >  SRR4302533.4420144/1‑94 (MQ=60)

     TTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGT                                                                                          >  SRR4302533.1254144/1‑94 (MQ=60)

      TCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTG                                                                                         >  SRR4302533.3734729/1‑94 (MQ=60)

      TCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTG                                                                                         <  SRR4302533.2460875/94‑1 (MQ=60)

       CCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGA                                                                                        >  SRR4302533.3731833/1‑94 (MQ=60)

       CCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGA                                                                                        <  SRR4302533.3921961/94‑1 (MQ=60)

        CCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGAT                                                                                       >  SRR4302533.5573028/1‑94 (MQ=60)

        CCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGAT                                                                                       <  SRR4302533.44880/94‑1 (MQ=60)

        CCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGAT                                                                                       <  SRR4302533.2671691/94‑1 (MQ=60)

        CCTTGTATGACGCTGACGTACAGCAGGAAGAAGGCTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGAT                                                                                       >  SRR4302533.6294992/1‑94 (MQ=60)

         CTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATC                                                                                      >  SRR4302533.3621103/1‑94 (MQ=60)

          TTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCG                                                                                     <  SRR4302533.5090410/94‑1 (MQ=60)

          TTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCG                                                                                     >  SRR4302533.5643257/1‑94 (MQ=60)

           TGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGT                                                                                    >  SRR4302533.3392438/1‑94 (MQ=60)

           TGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGT                                                                                    >  SRR4302533.5691015/1‑94 (MQ=60)

            GTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTC                                                                                   >  SRR4302533.4491136/1‑94 (MQ=60)

            GTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTC                                                                                   >  SRR4302533.729848/1‑94 (MQ=60)

            GTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTC                                                                                   <  SRR4302533.2999695/94‑1 (MQ=60)

             TATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCA                                                                                  >  SRR4302533.3351955/1‑94 (MQ=60)

             TATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCA                                                                                  >  SRR4302533.3605201/1‑94 (MQ=60)

              ATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCAC                                                                                 <  SRR4302533.5291975/94‑1 (MQ=60)

              ATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCAC                                                                                 >  SRR4302533.5099266/1‑94 (MQ=60)

              ATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCAC                                                                                 >  SRR4302533.3456978/1‑94 (MQ=60)

               TGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACG                                                                                <  SRR4302533.4363714/94‑1 (MQ=60)

                GACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGC                                                                               >  SRR4302533.293650/1‑94 (MQ=60)

                 ACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCC                                                                              <  SRR4302533.6177669/94‑1 (MQ=60)

                 ACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCC                                                                              <  SRR4302533.5985078/94‑1 (MQ=60)

                  CGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCG                                                                             >  SRR4302533.2891514/1‑94 (MQ=60)

                    CTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGA                                                                           >  SRR4302533.1797509/1‑94 (MQ=60)

                    CTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGA                                                                           >  SRR4302533.3168781/1‑94 (MQ=60)

                     TGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAA                                                                          >  SRR4302533.18961/1‑94 (MQ=60)

                     TGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAA                                                                          <  SRR4302533.2330871/94‑1 (MQ=60)

                       ACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATA                                                                        >  SRR4302533.1533647/1‑94 (MQ=60)

                       ACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATA                                                                        >  SRR4302533.2749359/1‑94 (MQ=60)

                       ACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATA                                                                        >  SRR4302533.5868744/1‑94 (MQ=60)

                        CGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATAT                                                                       <  SRR4302533.1512442/94‑1 (MQ=60)

                         GTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATA                                                                      >  SRR4302533.6030168/1‑94 (MQ=60)

                          TACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAA                                                                     <  SRR4302533.487667/94‑1 (MQ=60)

                            CAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACT                                                                   <  SRR4302533.3681589/94‑1 (MQ=60)

                            CAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACT                                                                   <  SRR4302533.1759182/94‑1 (MQ=60)

                             AGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTA                                                                  >  SRR4302533.532957/1‑94 (MQ=60)

                                AGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTC                                                               >  SRR4302533.3711578/1‑94 (MQ=60)

                                AGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTC                                                               >  SRR4302533.3194720/1‑94 (MQ=60)

                                AGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTC                                                               >  SRR4302533.576633/1‑94 (MQ=60)

                                 GGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCG                                                              >  SRR4302533.6163625/1‑94 (MQ=60)

                                 AGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCG                                                              <  SRR4302533.5262052/94‑1 (MQ=60)

                                  GAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGG                                                             <  SRR4302533.6246605/94‑1 (MQ=60)

                                  GAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGG                                                             <  SRR4302533.760435/94‑1 (MQ=60)

                                   AAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGT                                                            <  SRR4302533.5942124/94‑1 (MQ=60)

                                   AAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGT                                                            >  SRR4302533.301946/1‑94 (MQ=60)

                                    AGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGAGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTC                                                           >  SRR4302533.1754494/1‑94 (MQ=60)

                                     GAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTACCGCCGGAATAAAACTACTCGGTAC                                                          >  SRR4302533.4943622/1‑94 (MQ=60)

                                      AAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACC                                                         <  SRR4302533.5503695/94‑1 (MQ=60)

                                       AGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACCACTCGGTACCG                                                        <  SRR4302533.3720062/94‑1 (MQ=60)

                                        GGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGG                                                       <  SRR4302533.1995741/94‑1 (MQ=60)

                                          TTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGT                                                     <  SRR4302533.4252386/94‑1 (MQ=60)

                                           TTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTG                                                    >  SRR4302533.4648327/1‑94 (MQ=60)

                                            TTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGG                                                   <  SRR4302533.1324717/94‑1 (MQ=60)

                                             TCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGG                                                  <  SRR4302533.6164538/94‑1 (MQ=60)

                                              CCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGC                                                 <  SRR4302533.4210206/94‑1 (MQ=60)

                                               CAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCT                                                >  SRR4302533.2707471/1‑94 (MQ=60)

                                               CAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGAAGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCT                                                >  SRR4302533.6119725/1‑94 (MQ=60)

                                                 GCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGA                                              >  SRR4302533.1035117/1‑94 (MQ=60)

                                                   AACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAA                                            >  SRR4302533.1727262/1‑94 (MQ=60)

                                                    ACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATACCTACTCGGTACCGGGTGGGCTGAAAA                                           >  SRR4302533.6092014/1‑94 (MQ=60)

                                                    ACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAA                                           <  SRR4302533.4013179/94‑1 (MQ=60)

                                                     CGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAA                                          >  SRR4302533.4508730/1‑94 (MQ=60)

                                                     CGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGGGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAA                                          >  SRR4302533.5598555/1‑94 (MQ=60)

                                                      GGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGCGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAAT                                         >  SRR4302533.1399163/1‑94 (MQ=60)

                                                       GTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATG                                        <  SRR4302533.2582454/94‑1 (MQ=60)

                                                       GTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATG                                        <  SRR4302533.4500623/94‑1 (MQ=60)

                                                       GTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATG                                        >  SRR4302533.3444929/1‑94 (MQ=60)

                                                         TGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCC                                      >  SRR4302533.3614320/1‑94 (MQ=60)

                                                         TGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCC                                      <  SRR4302533.846874/94‑1 (MQ=60)

                                                          GAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCA                                     >  SRR4302533.4964827/1‑94 (MQ=60)

                                                          GAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCA                                     >  SRR4302533.372846/1‑94 (MQ=60)

                                                          GAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCA                                     >  SRR4302533.1121885/1‑94 (MQ=60)

                                                          GAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCA                                     >  SRR4302533.2081981/1‑94 (MQ=60)

                                                           AAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCAT                                    <  SRR4302533.4509271/94‑1 (MQ=60)

                                                           AAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCAT                                    >  SRR4302533.3533728/1‑94 (MQ=60)

                                                            AGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATC                                   <  SRR4302533.1995222/94‑1 (MQ=60)

                                                            AGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATC                                   <  SRR4302533.2251753/94‑1 (MQ=60)

                                                            AGCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATC                                   <  SRR4302533.3149143/94‑1 (MQ=60)

                                                             GCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCG                                  <  SRR4302533.3965174/94‑1 (MQ=60)

                                                             GCTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCG                                  <  SRR4302533.5748776/94‑1 (MQ=60)

                                                              CTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGA                                 >  SRR4302533.5488383/1‑94 (MQ=60)

                                                              CTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGA                                 <  SRR4302533.3286064/94‑1 (MQ=60)

                                                              CTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGA                                 <  SRR4302533.3615688/94‑1 (MQ=60)

                                                              CTCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCAACGA                                 >  SRR4302533.5593638/1‑94 (MQ=60)

                                                               TCTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGAC                                >  SRR4302533.3456451/1‑94 (MQ=60)

                                                                CTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACT                               >  SRR4302533.2825959/1‑94 (MQ=60)

                                                                CTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACT                               <  SRR4302533.3290590/94‑1 (MQ=60)

                                                                CTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACT                               <  SRR4302533.866726/94‑1 (MQ=60)

                                                                CTGGCGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACT                               >  SRR4302533.3482382/1‑94 (MQ=60)

                                                                  cttccgatctgctgtatAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGG                             <  SRR4302533.2583802/77‑1 (MQ=60)

                                                                    CGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGGT                           >  SRR4302533.4694530/1‑94 (MQ=60)

                                                                    CGGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCT                           <  SRR4302533.4386811/94‑1 (MQ=60)

                                                                     GGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGTCATCGACTGGCTT                          >  SRR4302533.3853522/1‑94 (MQ=60)

                                                                     GGAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTT                          <  SRR4302533.73200/94‑1 (MQ=60)

                                                                      GAACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTT                         <  SRR4302533.3489884/94‑1 (MQ=60)

                                                                       AACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTC                        >  SRR4302533.3446095/1‑94 (MQ=60)

                                                                       AACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTC                        >  SRR4302533.2954448/1‑94 (MQ=60)

                                                                       AACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTC                        >  SRR4302533.6155842/1‑94 (MQ=60)

                                                                       AACAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGCACCGGGTGGGCTGAAACATGCCATCGACTGGCTTTC                        >  SRR4302533.3225807/1‑94 (MQ=60)

                                                                         CAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCC                      <  SRR4302533.2280772/94‑1 (MQ=60)

                                                                         CAGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCC                      <  SRR4302533.167672/94‑1 (MQ=60)

                                                                          AGATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCG                     >  SRR4302533.4596853/1‑94 (MQ=60)

                                                                           GATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGC                    >  SRR4302533.1165052/1‑94 (MQ=60)

                                                                           GATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGC                    <  SRR4302533.805528/94‑1 (MQ=60)

                                                                            ATCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCC                   >  SRR4302533.2250812/1‑94 (MQ=60)

                                                                             TCCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTTCCGCCT                  >  SRR4302533.5562702/1‑94 (MQ=60)

                                                                              CCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTG                 >  SRR4302533.3956043/1‑94 (MQ=60)

                                                                              CCGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTG                 <  SRR4302533.4362154/94‑1 (MQ=60)

                                                                               CGTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGC                <  SRR4302533.4141231/94‑1 (MQ=60)

                                                                                GTCAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCC               <  SRR4302533.2523960/94‑1 (MQ=60)

                                                                                  CAGGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCAGCCTGCCGG             >  SRR4302533.2178449/1‑94 (MQ=60)

                                                                                    GGCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGAT           <  SRR4302533.1564766/94‑1 (MQ=60)

                                                                                     GCTGACGGCGTGGTTATCGTCACGCCGGAATATAACTACACGGTACCGGGTGGGCTAAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATC          <  SRR4302533.1450949/94‑1 (MQ=60)

                                                                                     GCTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATC          >  SRR4302533.2357643/1‑94 (MQ=60)

                                                                                      CTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCA         <  SRR4302533.5864780/94‑1 (MQ=60)

                                                                                      CTGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCA         <  SRR4302533.1937945/94‑1 (MQ=60)

                                                                                       TGACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGGACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAA        >  SRR4302533.3269081/1‑94 (MQ=60)

                                                                                       TGACGGCGTGGGGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAA        >  SRR4302533.1442395/1‑94 (MQ=60)

                                                                                        GACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAAC       >  SRR4302533.6109278/1‑94 (MQ=60)

                                                                                         ACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACC      <  SRR4302533.514733/94‑1 (MQ=60)

                                                                                         ACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACC      <  SRR4302533.424776/94‑1 (MQ=60)

                                                                                         ACGGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACC      <  SRR4302533.3782887/94‑1 (MQ=60)

                                                                                         ACGGCGTGATGATCGTCACGCCGAAATACAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACC      <  SRR4302533.5172120/94‑1 (MQ=60)

                                                                                          CGGCGTGGTGATCGTCACGCCGAAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACCG     <  SRR4302533.3254361/94‑1 (MQ=60)

                                                                                           GGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACCGC    >  SRR4302533.4777015/1‑94 (MQ=60)

                                                                                           GGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACCGC    <  SRR4302533.3137138/94‑1 (MQ=60)

                                                                                           GGCGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACCGC    >  SRR4302533.4821660/1‑94 (MQ=60)

                                                                                             GGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACCGCTG  <  SRR4302533.2645355/94‑1 (MQ=60)

CGACATTCCCTTGTATGACGCTGACGTACAGCAGGAAGAAGGTTTTCCAGCAACGGTTGAAGCTCTGGCGGAACAGATCCGTCAGGCTGACGGTGTGGTGATCGTCACGCCGGAATATAACTACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACCGCTG  >  NC_000913/3892412‑3892598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`