Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,903,375	A→G	V274A (GTG→GCG)	bglG ←	BglG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,903,375	0	A	G	100.0%	842.3 / NA	259	V274A (GTG→GCG)	bglG	BglG
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (123/136); total (123/136)

Only 100 of 272 total aligned reads displayed.

GACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCC  >  NC_000913/3903285‑3903464

 aCGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTgcgcgcgc                                                                                        <  2:4970513/93‑1 (MQ=255)

  cGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGcgcgcgcg                                                                                       <  1:1152779/93‑1 (MQ=255)

   ttGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCgcgcgcgc                                                                                      <  1:6005721/92‑1 (MQ=255)

   gTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCgcgcgcgc                                                                                      >  1:1819508/1‑93 (MQ=255)

    tGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGct                                                                                     >  2:645618/1‑93 (MQ=255)

     gAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGctc                                                                                    <  1:2757330/93‑1 (MQ=255)

     gAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGctc                                                                                    >  1:252537/1‑93 (MQ=255)

       aTCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCta                                                                                  <  2:1545559/93‑1 (MQ=255)

         cAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCtata                                                                                <  2:1127246/93‑1 (MQ=255)

         cAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCtata                                                                                <  2:5896941/93‑1 (MQ=255)

         cAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCtata                                                                                <  1:3466591/93‑1 (MQ=255)

          aaGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTatat                                                                               <  2:5067318/93‑1 (MQ=255)

          aaGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTatat                                                                               >  1:1011801/1‑93 (MQ=255)

          aaGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTatat                                                                               >  1:3674404/1‑93 (MQ=255)

          aaGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTatat                                                                               <  1:1312083/93‑1 (MQ=255)

          aaGCAATTATTTTCAGGTTATGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTatat                                                                               >  2:6158762/1‑93 (MQ=255)

           aGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATAtt                                                                              >  2:2303800/1‑93 (MQ=255)

           aGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATAtt                                                                              >  1:2983465/1‑93 (MQ=255)

             cAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTa                                                                            >  1:3629479/1‑93 (MQ=255)

             cAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTa                                                                            <  1:2597575/93‑1 (MQ=255)

             cAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTa                                                                            <  1:3172026/93‑1 (MQ=255)

               aTTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATg                                                                          >  2:5792430/1‑93 (MQ=255)

               aTTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATg                                                                          <  2:333111/93‑1 (MQ=255)

                tttttttCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATgg                                                                         <  1:6159345/93‑1 (MQ=255)

                 ttttttCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGc                                                                        <  1:5805587/93‑1 (MQ=255)

                   ttttCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTa                                                                      >  1:4123490/1‑93 (MQ=255)

                    tttCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTaa                                                                     >  2:5709433/1‑93 (MQ=255)

                     ttCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTaaa                                                                    <  2:422841/93‑1 (MQ=255)

                       cAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTaaaaa                                                                  <  1:3099301/93‑1 (MQ=255)

                       cAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTaaaaa                                                                  <  2:3872928/93‑1 (MQ=255)

                        aGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAAc                                                                 <  1:4503477/93‑1 (MQ=255)

                         ggTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACa                                                                <  1:5242786/93‑1 (MQ=255)

                          gTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACAt                                                               >  1:2493974/1‑93 (MQ=255)

                           ttttGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATa                                                              <  2:2434303/93‑1 (MQ=255)

                            tttGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATaa                                                             >  2:532278/1‑93 (MQ=255)

                              tGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAAtc                                                           <  2:2707155/93‑1 (MQ=255)

                              tGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAAtc                                                           <  2:3931137/93‑1 (MQ=255)

                               gCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAAtct                                                          >  1:5881038/1‑93 (MQ=255)

                                cccGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAAtctc                                                         <  2:1907978/93‑1 (MQ=255)

                                cccGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAAtctc                                                         <  1:442366/93‑1 (MQ=255)

                                  cGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTg                                                       >  1:2275854/1‑93 (MQ=255)

                                   gCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGc                                                      >  1:5363335/1‑93 (MQ=255)

                                    cTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCg                                                     <  1:2442680/93‑1 (MQ=255)

                                        gTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTg                                                 >  2:890269/1‑93 (MQ=255)

                                           cGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGaaa                                              >  2:4048222/1‑93 (MQ=255)

                                            ggTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAAt                                             <  2:5437834/93‑1 (MQ=255)

                                              tAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAAttt                                           >  1:3975217/1‑93 (MQ=255)

                                               aaCAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAAtttt                                          >  1:167344/1‑93 (MQ=255)

                                                 cAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTAc                                        >  1:5509484/1‑93 (MQ=255)

                                                 cAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTAc                                        <  1:864373/93‑1 (MQ=255)

                                                   aTCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGt                                      <  1:1375182/93‑1 (MQ=255)

                                                   aTCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGt                                      <  2:4667207/93‑1 (MQ=255)

                                                    tCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGtt                                     >  1:2216206/1‑93 (MQ=255)

                                                    tCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGtt                                     <  2:6229366/93‑1 (MQ=255)

                                                     ccTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTg                                    <  1:683048/93‑1 (MQ=255)

                                                     ccTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTg                                    >  1:41702/1‑93 (MQ=255)

                                                      cTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGa                                   <  2:4298665/93‑1 (MQ=255)

                                                       tttACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGAt                                  >  1:1958323/1‑93 (MQ=255)

                                                        ttACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATa                                 >  1:169990/1‑93 (MQ=255)

                                                        ttACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATa                                 <  1:5049955/93‑1 (MQ=255)

                                                          aCTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACt                               >  2:1269781/1‑93 (MQ=255)

                                                            tCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGc                             <  2:4804188/93‑1 (MQ=255)

                                                            tCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGc                             <  1:5424892/93‑1 (MQ=255)

                                                              aGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCaa                           <  2:1620715/93‑1 (MQ=255)

                                                              aGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCaa                           >  1:4862500/1‑93 (MQ=255)

                                                               gTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCaaa                          >  2:1703636/1‑93 (MQ=255)

                                                               gTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCaaa                          >  1:6113444/1‑93 (MQ=255)

                                                                taataaTATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAAc                         >  1:286081/1‑93 (MQ=255)

                                                                 aataatATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAAcc                        >  1:3297044/1‑93 (MQ=255)

                                                                  ataataTTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCa                       <  1:5607629/93‑1 (MQ=255)

                                                                  ataataTTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCa                       >  2:2862503/1‑93 (MQ=255)

                                                                   taataTTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCaa                      >  2:1432177/1‑93 (MQ=255)

                                                                    aataTTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAAt                     >  1:5039176/1‑93 (MQ=255)

                                                                     atatTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATa                    <  2:2929906/93‑1 (MQ=255)

                                                                     atatTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATa                    <  2:4795215/93‑1 (MQ=255)

                                                                     atatTTCAGCGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATa                    <  2:2818028/93‑1 (MQ=255)

                                                                       atTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATaaa                  >  1:2168131/1‑93 (MQ=255)

                                                                        tttCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATaaaa                 >  1:3824275/1‑93 (MQ=255)

                                                                         ttCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATaaaaa                <  2:2024455/93‑1 (MQ=255)

                                                                         ttCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATaaaaa                <  1:3985626/93‑1 (MQ=255)

                                                                         ttCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATaaaaa                <  1:2332072/93‑1 (MQ=255)

                                                                          tCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAAt               <  2:5980903/93‑1 (MQ=255)

                                                                          tCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGGGAAATTTTACGTTGATGCTGCAGACCAATAAAAAt               >  1:2035915/1‑93 (MQ=255)

                                                                           cAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATg              <  2:4886869/93‑1 (MQ=255)

                                                                            aGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATgg             >  2:3442495/1‑93 (MQ=255)

                                                                             gtgtTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGc            >  2:328065/1‑93 (MQ=255)

                                                                             gtgtTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGc            <  2:3716491/93‑1 (MQ=255)

                                                                             gtgtTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGc            >  2:4868147/1‑93 (MQ=255)

                                                                             gtgtTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGc            <  1:1588480/93‑1 (MQ=255)

                                                                              tgtTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCg           >  2:4479674/1‑93 (MQ=255)

                                                                              tgtTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCg           >  1:1199389/1‑93 (MQ=255)

                                                                               gtTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGa          <  1:1455975/93‑1 (MQ=255)

                                                                                ttCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGac         >  1:4808943/1‑92 (MQ=255)

                                                                                ttCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAt         >  1:3074838/1‑93 (MQ=255)

                                                                                ttCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAt         <  2:2458554/93‑1 (MQ=255)

                                                                                ttCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAt         >  2:3215070/1‑93 (MQ=255)

                                                                                   tttGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCg      >  2:133580/1‑93 (MQ=255)

                                                                                    ttGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGt     >  2:5823411/1‑93 (MQ=255)

                                                                                    ttGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGt     <  2:1844697/93‑1 (MQ=255)

                                                                                     tGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGtt    <  2:525658/93‑1 (MQ=255)

GACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCC  >  NC_000913/3903285‑3903464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCAC  >  NC_000913/3903282‑3903468

CCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCG                                                                                               >  SRR4302533.3179156/1‑94 (MQ=60)

 CTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGC                                                                                              >  SRR4302533.5357265/1‑94 (MQ=60)

 CTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGC                                                                                              <  SRR4302533.1760042/94‑1 (MQ=60)

 CTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGCGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGC                                                                                              >  SRR4302533.4748739/1‑94 (MQ=60)

  TGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCG                                                                                             >  SRR4302533.4440302/1‑94 (MQ=60)

   GACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGC                                                                                            <  SRR4302533.2765704/94‑1 (MQ=60)

    ACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCG                                                                                           >  SRR4302533.5304522/1‑94 (MQ=60)

     CGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGC                                                                                          >  SRR4302533.1830624/1‑94 (MQ=60)

     CGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGC                                                                                          <  SRR4302533.1159682/94‑1 (MQ=60)

      TTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCT                                                                                         <  SRR4302533.6042110/94‑1 (MQ=60)

       TGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTC                                                                                        >  SRR4302533.254090/1‑94 (MQ=60)

       TGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTC                                                                                        >  SRR4302533.1732443/1‑94 (MQ=60)

        GAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCT                                                                                       <  SRR4302533.2774237/94‑1 (MQ=60)

         AATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTA                                                                                      <  SRR4302533.1439805/94‑1 (MQ=60)

           TCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATA                                                                                    <  SRR4302533.3640109/94‑1 (MQ=60)

            CAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATAT                                                                                   <  SRR4302533.4617309/94‑1 (MQ=60)

            CAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATAT                                                                                   <  SRR4302533.6102266/94‑1 (MQ=60)

            CAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATAT                                                                                   <  SRR4302533.3487986/94‑1 (MQ=60)

            CAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATAT                                                                                   >  SRR4302533.3696988/1‑94 (MQ=60)

            CAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATAT                                                                                   <  SRR4302533.782090/94‑1 (MQ=60)

            CAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATAT                                                                                   >  SRR4302533.1017722/1‑94 (MQ=60)

             AAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATT                                                                                  <  SRR4302533.2216343/94‑1 (MQ=60)

             AAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATT                                                                                  <  SRR4302533.1173279/94‑1 (MQ=60)

             AAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATT                                                                                  >  SRR4302533.3001714/1‑94 (MQ=60)

             AAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATT                                                                                  >  SRR4302533.184258/1‑94 (MQ=60)

             AAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATT                                                                                  <  SRR4302533.1319957/94‑1 (MQ=60)

              AGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTT                                                                                 >  SRR4302533.2260638/1‑94 (MQ=60)

              AGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTT                                                                                 >  SRR4302533.3992396/1‑94 (MQ=60)

               GCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTA                                                                                >  SRR4302533.3651812/1‑94 (MQ=60)

                CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTAT                                                                               <  SRR4302533.2613536/94‑1 (MQ=60)

                CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTAT                                                                               <  SRR4302533.3373273/94‑1 (MQ=60)

                CAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTAT                                                                               <  SRR4302533.3191553/94‑1 (MQ=60)

                 AATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATG                                                                              <  SRR4302533.6171916/94‑1 (MQ=60)

                  ATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGG                                                                             <  SRR4302533.2812028/94‑1 (MQ=60)

                  ATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGG                                                                             >  SRR4302533.3151898/1‑94 (MQ=60)

                   TTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGC                                                                            <  SRR4302533.6196389/94‑1 (MQ=60)

                    TTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCT                                                                           <  SRR4302533.4875260/94‑1 (MQ=60)

                    TTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCT                                                                           <  SRR4302533.5840644/94‑1 (MQ=60)

                    TTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCT                                                                           <  SRR4302533.2181683/94‑1 (MQ=60)

                     TTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTA                                                                          <  SRR4302533.5080000/94‑1 (MQ=60)

                     TTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTA                                                                          >  SRR4302533.4148525/1‑94 (MQ=60)

                       TTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAA                                                                        >  SRR4302533.3876773/1‑94 (MQ=60)

                        TTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAA                                                                       >  SRR4302533.4963085/1‑94 (MQ=60)

                        TTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAA                                                                       >  SRR4302533.3096000/1‑94 (MQ=60)

                        TTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAA                                                                       >  SRR4302533.3095999/1‑94 (MQ=60)

                          CAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAAC                                                                     <  SRR4302533.3118355/94‑1 (MQ=60)

                           AGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACA                                                                    <  SRR4302533.4530759/94‑1 (MQ=60)

                            GGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACAT                                                                   >  SRR4302533.2509359/1‑94 (MQ=60)

                            GGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACAT                                                                   <  SRR4302533.5274300/94‑1 (MQ=60)

                              TTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAA                                                                 <  SRR4302533.2579418/94‑1 (MQ=60)

                              TTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAA                                                                 <  SRR4302533.4003806/94‑1 (MQ=60)

                               TTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAAT                                                                >  SRR4302533.5192984/1‑94 (MQ=60)

                               TTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAAT                                                                <  SRR4302533.1626841/94‑1 (MQ=60)

                                 TGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCT                                                              >  SRR4302533.5916578/1‑94 (MQ=60)

                                  GCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTC                                                             <  SRR4302533.2333391/94‑1 (MQ=60)

                                  GCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTC                                                             <  SRR4302533.4546243/94‑1 (MQ=60)

                                   CCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCT                                                            <  SRR4302533.246530/94‑1 (MQ=60)

                                   CCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCT                                                            <  SRR4302533.445010/94‑1 (MQ=60)

                                    CCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTG                                                           >  SRR4302533.5008474/1‑94 (MQ=60)

                                    CCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTG                                                           >  SRR4302533.2289945/1‑94 (MQ=60)

                                    CCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTG                                                           >  SRR4302533.5696241/1‑94 (MQ=60)

                                    CCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTG                                                           >  SRR4302533.5568689/1‑94 (MQ=60)

                                     CGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGC                                                          >  SRR4302533.3566366/1‑94 (MQ=60)

                                     CGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGC                                                          >  SRR4302533.5395550/1‑94 (MQ=60)

                                     CGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGC                                                          >  SRR4302533.2764077/1‑94 (MQ=60)

                                     CGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGC                                                          >  SRR4302533.2919470/1‑94 (MQ=60)

                                       CTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGG                                                        <  SRR4302533.2457759/94‑1 (MQ=60)

                                          AGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTG                                                     >  SRR4302533.5349603/1‑94 (MQ=60)

                                          AGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTG                                                     >  SRR4302533.2868434/1‑94 (MQ=60)

                                              CGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAAT                                                 <  SRR4302533.6159608/94‑1 (MQ=60)

                                               GGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATT                                                <  SRR4302533.4007390/94‑1 (MQ=60)

                                                GTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTT                                               >  SRR4302533.3999418/1‑94 (MQ=60)

                                                GTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTT                                               <  SRR4302533.2266856/94‑1 (MQ=60)

                                                GTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTT                                               >  SRR4302533.3258536/1‑94 (MQ=60)

                                                 TAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTT                                              >  SRR4302533.168405/1‑94 (MQ=60)

                                                  AACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTA                                             >  SRR4302533.1166203/1‑94 (MQ=60)

                                                   ACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTAC                                            >  SRR4302533.5542743/1‑94 (MQ=60)

                                                    CAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACG                                           <  SRR4302533.869436/94‑1 (MQ=60)

                                                     AATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGT                                          >  SRR4302533.1706450/1‑94 (MQ=60)

                                                      ATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTT                                         >  SRR4302533.2229887/1‑94 (MQ=60)

                                                      ATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTT                                         <  SRR4302533.1383456/94‑1 (MQ=60)

                                                      ATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTT                                         <  SRR4302533.6086755/94‑1 (MQ=60)

                                                      ATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTT                                         >  SRR4302533.5997281/1‑94 (MQ=60)

                                                      ATCCTGTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTT                                         <  SRR4302533.3695927/94‑1 (MQ=60)

                                                       TCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTG                                        <  SRR4302533.4846754/94‑1 (MQ=60)

                                                       TCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTG                                        >  SRR4302533.41985/1‑94 (MQ=60)

                                                       TCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTG                                        <  SRR4302533.5487179/94‑1 (MQ=60)

                                                        CCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGA                                       <  SRR4302533.687087/94‑1 (MQ=60)

                                                         CTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGAT                                      <  SRR4302533.1254095/94‑1 (MQ=60)

                                                         CTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGAT                                      <  SRR4302533.3801497/94‑1 (MQ=60)

                                                         CTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGAT                                      <  SRR4302533.3157705/94‑1 (MQ=60)

                                                         CTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGAT                                      >  SRR4302533.5461695/1‑94 (MQ=60)

                                                         CTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGAT                                      <  SRR4302533.2535180/94‑1 (MQ=60)

                                                         CTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGAT                                      >  SRR4302533.1970278/1‑94 (MQ=60)

                                                         CTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGAGAAATTTTACGTTGAT                                      >  SRR4302533.2476881/1‑94 (MQ=60)

                                                          TTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATA                                     >  SRR4302533.3036854/1‑94 (MQ=60)

                                                          TTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATA                                     >  SRR4302533.171061/1‑94 (MQ=60)

                                                          TTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATA                                     <  SRR4302533.3826510/94‑1 (MQ=60)

                                                           TTACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATAC                                    <  SRR4302533.5080499/94‑1 (MQ=60)

                                                            TACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACT                                   <  SRR4302533.1045860/94‑1 (MQ=60)

                                                             ACTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTG                                  >  SRR4302533.5830284/1‑94 (MQ=60)

                                                              CTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGC                                 >  SRR4302533.241424/1‑94 (MQ=60)

                                                              CTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGC                                 <  SRR4302533.5625217/94‑1 (MQ=60)

                                                              CTCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGC                                 >  SRR4302533.1484949/1‑94 (MQ=60)

                                                               TCAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCA                                <  SRR4302533.5457563/94‑1 (MQ=60)

                                                                CAGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAA                               >  SRR4302533.4891971/1‑94 (MQ=60)

                                                                 AGTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAA                              >  SRR4302533.6150337/1‑94 (MQ=60)

                                                                  GTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAAC                             >  SRR4302533.287830/1‑94 (MQ=60)

                                                                  GTAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAAC                             <  SRR4302533.2158854/94‑1 (MQ=60)

                                                                   TAATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACC                            >  SRR4302533.3317392/1‑94 (MQ=60)

                                                                     ATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAA                          <  SRR4302533.5641513/94‑1 (MQ=60)

                                                                     ATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAA                          >  SRR4302533.1808445/1‑94 (MQ=60)

                                                                     ATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAA                          >  SRR4302533.5450715/1‑94 (MQ=60)

                                                                     ATAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAA                          >  SRR4302533.3487219/1‑94 (MQ=60)

                                                                      TAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAAT                         <  SRR4302533.4480349/94‑1 (MQ=60)

                                                                      TAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAAT                         >  SRR4302533.1478650/1‑94 (MQ=60)

                                                                      TAATATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAAT                         >  SRR4302533.5069686/1‑94 (MQ=60)

                                                                       AATATTTCAGTGTTCTGTGCGCGCGCTCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATA                        <  SRR4302533.4444112/94‑1 (MQ=60)

                                                                         TATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAA                      >  SRR4302533.4168975/1‑94 (MQ=60)

                                                                         TATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAA                      >  SRR4302533.5874382/1‑94 (MQ=60)

                                                                         TATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAA                      >  SRR4302533.2181466/1‑94 (MQ=60)

                                                                          ATTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAA                     >  SRR4302533.3847656/1‑94 (MQ=60)

                                                                           TTTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAA                    >  SRR4302533.1363340/1‑94 (MQ=60)

                                                                            TTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAAT                   <  SRR4302533.4009892/94‑1 (MQ=60)

                                                                            TTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAAT                   <  SRR4302533.2346511/94‑1 (MQ=60)

                                                                            TTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAAT                   <  SRR4302533.3032080/94‑1 (MQ=60)

                                                                            TTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAAT                   <  SRR4302533.241125/94‑1 (MQ=60)

                                                                            TTCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGGGAAATTTTACGTTGATGCTGCAGACCAATAAAAAT                   >  SRR4302533.2048470/1‑94 (MQ=60)

                                                                             TCAGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATG                  <  SRR4302533.1270029/94‑1 (MQ=60)

                                                                               AGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGC                >  SRR4302533.2070984/1‑94 (MQ=60)

                                                                               AGTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGC                >  SRR4302533.834537/1‑94 (MQ=60)

                                                                                GTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCG               <  SRR4302533.1598083/94‑1 (MQ=60)

                                                                                GTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCG               <  SRR4302533.919911/94‑1 (MQ=60)

                                                                                GTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCG               <  SRR4302533.5918968/94‑1 (MQ=60)

                                                                                GTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCG               >  SRR4302533.1206593/1‑94 (MQ=60)

                                                                                GTGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCG               <  SRR4302533.258858/94‑1 (MQ=60)

                                                                                 TGTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGA              >  SRR4302533.1909624/1‑94 (MQ=60)

                                                                                  GTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAT             >  SRR4302533.3093711/1‑94 (MQ=60)

                                                                                  GTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAT             <  SRR4302533.1464754/94‑1 (MQ=60)

                                                                                  GTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAT             >  SRR4302533.1397995/1‑94 (MQ=60)

                                                                                  GTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAT             >  SRR4302533.4134256/1‑94 (MQ=60)

                                                                                  GTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAT             <  SRR4302533.5137271/94‑1 (MQ=60)

                                                                                  GTTCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAC             >  SRR4302533.4838071/1‑94 (MQ=60)

                                                                                    TCTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCC           >  SRR4302533.2010593/1‑94 (MQ=60)

                                                                                     CTTTGCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCG          >  SRR4302533.1645545/1‑94 (MQ=60)

                                                                                         GCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCC      >  SRR4302533.6287967/1‑94 (MQ=60)

                                                                                         GCGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCC      >  SRR4302533.4191923/1‑94 (MQ=60)

                                                                                          CGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCG     >  SRR4302533.2245887/1‑94 (MQ=60)

                                                                                          CGCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCG     >  SRR4302533.32695/1‑94 (MQ=60)

                                                                                           GCGCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGC    >  SRR4302533.778651/1‑94 (MQ=60)

                                                                                             GCGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCAC  <  SRR4302533.3099838/94‑1 (MQ=60)

CCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCAC  >  NC_000913/3903282‑3903468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`