Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,921,007	C→T	R101H (CGC→CAC)	gidB ←	glucose‑inhibited division

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,921,007	0	C	T	100.0%	1111.7 / NA	302	R101H (CGC→CAC)	gidB	glucose‑inhibited division
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (172/130); total (172/130)

Only 100 of 323 total aligned reads displayed.

GGCTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGCGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACA  >  NC_000913/3920917‑3921096

 gcTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGtt                                                                                        >  1:5327362/1‑93 (MQ=255)

 gcTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGtt                                                                                        >  1:617863/1‑93 (MQ=255)

 gcTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGtt                                                                                        <  2:177251/93‑1 (MQ=255)

   tctGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTa                                                                                      <  1:2807080/93‑1 (MQ=255)

    ctGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTAc                                                                                     >  2:203121/1‑93 (MQ=255)

       aaGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCaa                                                                                  >  1:5249760/1‑93 (MQ=255)

        aGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAg                                                                                 <  2:4997024/93‑1 (MQ=255)

        aGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAg                                                                                 >  2:2600960/1‑93 (MQ=255)

          gAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGc                                                                               <  1:2622263/93‑1 (MQ=255)

            aaCTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTa                                                                             <  2:2747073/93‑1 (MQ=255)

             aCTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTAt                                                                            <  1:4912785/93‑1 (MQ=255)

              ctctTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATc                                                                           <  1:4270972/93‑1 (MQ=255)

               tcttctACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATcc                                                                          <  2:472097/93‑1 (MQ=255)

               tcttctACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATcc                                                                          >  1:382342/1‑93 (MQ=255)

                cttctACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCa                                                                         <  2:1927722/93‑1 (MQ=255)

                  tctACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAAc                                                                       <  2:164226/93‑1 (MQ=255)

                    tgcccTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACag                                                                     <  1:5036370/91‑1 (MQ=255)

                    tACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACag                                                                     >  1:4233605/1‑93 (MQ=255)

                     tcccTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACaga                                                                    <  2:5266935/92‑1 (MQ=255)

                     aCCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCGCCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACaga                                                                    <  2:3255790/93‑1 (MQ=255)

                     aCCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACaga                                                                    >  2:3696870/1‑93 (MQ=255)

                      cccTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCCCCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACagag                                                                   <  2:6043272/93‑1 (MQ=255)

                      cccTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGTCTATCCAACagag                                                                   >  1:3603846/1‑93 (MQ=255)

                      cccTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACagag                                                                   <  2:4433169/93‑1 (MQ=255)

                       ccTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGt                                                                  >  1:698215/1‑93 (MQ=255)

                       ccTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGt                                                                  >  2:3329827/1‑93 (MQ=255)

                        cTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTg                                                                 >  2:1502605/1‑93 (MQ=255)

                        cTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTg                                                                 >  1:1401625/1‑93 (MQ=255)

                           ctctGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGaaa                                                              <  2:2236556/93‑1 (MQ=255)

                           ctctGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGaaa                                                              >  2:5502177/1‑93 (MQ=255)

                           ctctGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGaaa                                                              <  1:2079204/93‑1 (MQ=255)

                           ctctGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGaaa                                                              >  2:3924371/1‑93 (MQ=255)

                           ctctGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGaaa                                                              <  2:4493549/93‑1 (MQ=255)

                            tctGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAAt                                                             >  2:6258312/1‑93 (MQ=255)

                             ctGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATg                                                            >  1:58996/1‑93 (MQ=255)

                             ctGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATg                                                            <  2:2354780/93‑1 (MQ=255)

                             ctGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATg                                                            >  2:3446733/1‑93 (MQ=255)

                             ctGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATg                                                            >  1:5402221/1‑93 (MQ=255)

                              tGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAGTgg                                                           >  1:5755103/1‑93 (MQ=255)

                               gTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATggg                                                          >  2:3764020/1‑93 (MQ=255)

                                tACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGc                                                         <  1:1967227/93‑1 (MQ=255)

                                tACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGc                                                         <  1:2578626/93‑1 (MQ=255)

                                  cTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCtt                                                       <  2:4257990/93‑1 (MQ=255)

                                   tGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTc                                                      >  1:4095261/1‑93 (MQ=255)

                                    ggTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCa                                                     <  1:1004072/93‑1 (MQ=255)

                                     gTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAg                                                    >  1:4486337/1‑93 (MQ=255)

                                     gTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAg                                                    >  2:2183872/1‑93 (MQ=255)

                                      ttCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAgg                                                   >  2:1826090/1‑93 (MQ=255)

                                       tCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGa                                                  >  1:2728556/1‑93 (MQ=255)

                                       tCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGa                                                  >  2:5434206/1‑93 (MQ=255)

                                       tCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAAAGGGCTTCAGGa                                                  >  2:5774670/1‑93 (MQ=255)

                                        cAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGAc                                                 <  1:4662896/93‑1 (MQ=255)

                                        cAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGAc                                                 <  2:5637552/93‑1 (MQ=255)

                                         aaTATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATACAACAGAGTGAAATGGGCTTCAGGACg                                                >  1:4342835/1‑93 (MQ=255)

                                          atatTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGc                                               >  2:3631026/1‑93 (MQ=255)

                                           tatTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCa                                              <  1:3924053/93‑1 (MQ=255)

                                           tatTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCa                                              >  2:1253752/1‑93 (MQ=255)

                                            atTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCAc                                             <  1:3047766/93‑1 (MQ=255)

                                            atTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCAc                                             >  1:399249/1‑93 (MQ=255)

                                                tcCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATa                                         >  1:3403936/1‑93 (MQ=255)

                                                 ccAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATag                                        >  2:1336574/1‑93 (MQ=255)

                                                 ccAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATag                                        >  1:867608/1‑93 (MQ=255)

                                                 ccAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATag                                        >  1:131323/1‑93 (MQ=255)

                                                 ccAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATag                                        <  1:563611/93‑1 (MQ=255)

                                                 ccAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGGTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATag                                        >  2:786720/1‑93 (MQ=255)

                                                  cAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATaga                                       <  2:204618/93‑1 (MQ=255)

                                                   aGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATagag                                      <  2:5128270/93‑1 (MQ=255)

                                                    gTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATagaga                                     >  2:2428371/1‑93 (MQ=255)

                                                    gTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATagaga                                     >  2:3679186/1‑93 (MQ=255)

                                                     tttAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATagagag                                    >  1:4802360/1‑93 (MQ=255)

                                                      ttAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGt                                   <  1:2390705/93‑1 (MQ=255)

                                                       tAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTg                                  <  1:1703633/93‑1 (MQ=255)

                                                        aaGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTAGCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTgg                                 >  2:4842637/1‑93 (MQ=255)

                                                        aaGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTgg                                 <  2:844749/93‑1 (MQ=255)

                                                        aaGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTgg                                 >  1:5687383/1‑93 (MQ=255)

                                                         aGCTCATGTTGCGCATGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGa                                <  2:5665105/93‑1 (MQ=255)

                                                         aGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGa                                >  1:3477787/1‑93 (MQ=255)

                                                          gCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGaa                               <  2:2970964/93‑1 (MQ=255)

                                                          gCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGaa                               <  1:1240806/93‑1 (MQ=255)

                                                                 ttGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGCGAAATGGGCTTCAGGACGCACGATAGAGAGGGGAATGCCTgg                        >  2:3533993/1‑93 (MQ=255)

                                                                  tGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGc                       >  2:2905263/1‑93 (MQ=255)

                                                                  tGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGc                       >  2:1430585/1‑93 (MQ=255)

                                                                  tGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGc                       >  2:4781484/1‑93 (MQ=255)

                                                                  tGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGCGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGc                       >  2:4077257/1‑93 (MQ=255)

                                                                       cTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTcc                  >  2:4359316/1‑93 (MQ=255)

                                                                        tGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCt                 >  2:4673952/1‑93 (MQ=255)

                                                                        tGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCt                 <  2:1100517/93‑1 (MQ=255)

                                                                        tGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCt                 >  2:4897091/1‑93 (MQ=255)

                                                                         gACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTg                >  1:1063709/1‑93 (MQ=255)

                                                                         gACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTg                <  2:6197589/93‑1 (MQ=255)

                                                                         gACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTg                <  1:3297020/93‑1 (MQ=255)

                                                                            gAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTc             <  2:4101561/93‑1 (MQ=255)

                                                                              aGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCg           >  2:5356791/1‑93 (MQ=255)

                                                                               ggAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCgg          <  1:2130697/93‑1 (MQ=255)

                                                                               ggAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCgg          <  1:1544149/93‑1 (MQ=255)

                                                                                gAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGt         >  2:2673265/1‑93 (MQ=255)

                                                                                 aaaCGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTg        >  1:5552661/1‑93 (MQ=255)

                                                                                     gcacgtGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGa    >  1:3205126/1‑93 (MQ=255)

                                                                                     gcacgtGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGa    <  1:2874535/93‑1 (MQ=255)

                                                                                       acgtGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACa  >  1:1755587/1‑93 (MQ=255)

GGCTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGCGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACA  >  NC_000913/3920917‑3921096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCGGCTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGCGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACATCGA  >  NC_000913/3920914‑3921100

GGCGGCTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCTCCTGACGAAGGAAACGCACGT                                                                                               <  SRR4302533.1944425/94‑1 (MQ=60)

 GCGGCTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTG                                                                                              <  SRR4302533.4899259/94‑1 (MQ=60)

   GGCTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTT                                                                                            >  SRR4302533.621483/1‑94 (MQ=60)

   GGCTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTT                                                                                            <  SRR4302533.4090051/94‑1 (MQ=60)

   GGCTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTT                                                                                            >  SRR4302533.5359287/1‑94 (MQ=60)

   GGCTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTT                                                                                            <  SRR4302533.399870/94‑1 (MQ=60)

     CTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTA                                                                                          >  SRR4302533.1026971/1‑94 (MQ=60)

     CTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTA                                                                                          >  SRR4302533.2802457/1‑94 (MQ=60)

     CTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTA                                                                                          >  SRR4302533.169462/1‑94 (MQ=60)

      TCTGAAGGAATCTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTAC                                                                                         <  SRR4302533.4226396/94‑1 (MQ=60)

      TCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTAC                                                                                         <  SRR4302533.338297/94‑1 (MQ=60)

      TCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTAC                                                                                         <  SRR4302533.2824354/94‑1 (MQ=60)

      TCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTAC                                                                                         >  SRR4302533.5398355/1‑94 (MQ=60)

       CTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAATCGCACGTGTTTACC                                                                                        <  SRR4302533.2781105/94‑1 (MQ=60)

       CTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACC                                                                                        >  SRR4302533.4024810/1‑94 (MQ=60)

        TGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCA                                                                                       >  SRR4302533.2297189/1‑94 (MQ=60)

        TGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCA                                                                                       >  SRR4302533.2631648/1‑94 (MQ=60)

         GAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAA                                                                                      <  SRR4302533.3920819/94‑1 (MQ=60)

         GAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAA                                                                                      >  SRR4302533.5281311/1‑94 (MQ=60)

          AAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAG                                                                                     <  SRR4302533.1353985/94‑1 (MQ=60)

           AGGAAACTCTTCTACCCTGCTCTGTACTGGTTTAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGG                                                                                    >  SRR4302533.3620936/1‑94 (MQ=60)

            GGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGC                                                                                   >  SRR4302533.2139984/1‑94 (MQ=60)

            GGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGC                                                                                   >  SRR4302533.565530/1‑94 (MQ=60)

             GAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCT                                                                                  <  SRR4302533.2638358/94‑1 (MQ=60)

                ACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATC                                                                               >  SRR4302533.2610550/1‑94 (MQ=60)

                ACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATC                                                                               <  SRR4302533.4942544/94‑1 (MQ=60)

                 CTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCC                                                                              >  SRR4302533.1315475/1‑94 (MQ=60)

                 CTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCC                                                                              >  SRR4302533.384647/1‑94 (MQ=60)

                 CTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCC                                                                              <  SRR4302533.3465947/94‑1 (MQ=60)

                 CTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCC                                                                              <  SRR4302533.4296679/94‑1 (MQ=60)

                  TCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCA                                                                             <  SRR4302533.386372/94‑1 (MQ=60)

                   CTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAA                                                                            >  SRR4302533.3167001/1‑94 (MQ=60)

                      CTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAG                                                                         >  SRR4302533.4259188/1‑94 (MQ=60)

                      CTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAG                                                                         >  SRR4302533.4348773/1‑94 (MQ=60)

                       TGCCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGA                                                                        <  SRR4302533.5066871/94‑1 (MQ=60)

                        ACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGTCTATCCAACAGAG                                                                       >  SRR4302533.3626027/1‑94 (MQ=60)

                        ACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAG                                                                       >  SRR4302533.4394038/1‑94 (MQ=60)

                         CCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGT                                                                      <  SRR4302533.4547387/94‑1 (MQ=60)

                         CCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGT                                                                      >  SRR4302533.702345/1‑94 (MQ=60)

                          CCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTG                                                                     <  SRR4302533.4704549/94‑1 (MQ=60)

                          CCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTG                                                                     >  SRR4302533.3014815/1‑94 (MQ=60)

                          CCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTG                                                                     >  SRR4302533.1758676/1‑94 (MQ=60)

                          CCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTG                                                                     >  SRR4302533.1410077/1‑94 (MQ=60)

                            TGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAA                                                                   >  SRR4302533.1358217/1‑94 (MQ=60)

                             GCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAA                                                                  >  SRR4302533.4321062/1‑94 (MQ=60)

                             GCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAA                                                                  <  SRR4302533.4619858/94‑1 (MQ=60)

                              CTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAAT                                                                 <  SRR4302533.2091997/94‑1 (MQ=60)

                              CTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAAT                                                                 <  SRR4302533.6032900/94‑1 (MQ=60)

                               TCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATG                                                                >  SRR4302533.5434684/1‑94 (MQ=60)

                               TCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATG                                                                >  SRR4302533.1083006/1‑94 (MQ=60)

                               TCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATG                                                                >  SRR4302533.59384/1‑94 (MQ=60)

                                CTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAGTGG                                                               >  SRR4302533.5789828/1‑94 (MQ=60)

                                CTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGG                                                               >  SRR4302533.1443067/1‑94 (MQ=60)

                                CTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCCATCCAACAGAGTGAAATGG                                                               >  SRR4302533.5465569/1‑94 (MQ=60)

                                  GTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGC                                                             >  SRR4302533.5757873/1‑94 (MQ=60)

                                   TACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCT                                                            <  SRR4302533.2594495/94‑1 (MQ=60)

                                   TACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCT                                                            <  SRR4302533.1979249/94‑1 (MQ=60)

                                     CTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTC                                                          >  SRR4302533.1460647/1‑94 (MQ=60)

                                     CTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTC                                                          >  SRR4302533.4120193/1‑94 (MQ=60)

                                      TGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCA                                                         >  SRR4302533.3710562/1‑94 (MQ=60)

                                      TGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGAGAAATGGGCTTCA                                                         >  SRR4302533.1199117/1‑94 (MQ=60)

                                       GGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAG                                                        <  SRR4302533.1009943/94‑1 (MQ=60)

                                       GGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAG                                                        <  SRR4302533.1958126/94‑1 (MQ=60)

                                       GGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAG                                                        >  SRR4302533.4513497/1‑94 (MQ=60)

                                        GTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGG                                                       <  SRR4302533.4278204/94‑1 (MQ=60)

                                        GTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGG                                                       <  SRR4302533.5672918/94‑1 (MQ=60)

                                        GTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGG                                                       >  SRR4302533.4934966/1‑94 (MQ=60)

                                         TTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGA                                                      >  SRR4302533.2745294/1‑94 (MQ=60)

                                          TCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGAC                                                     <  SRR4302533.3283854/94‑1 (MQ=60)

                                          TCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGAC                                                     <  SRR4302533.3032487/94‑1 (MQ=60)

                                          TCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGAC                                                     <  SRR4302533.1454962/94‑1 (MQ=60)

                                           CAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACG                                                    >  SRR4302533.5026250/1‑94 (MQ=60)

                                           CAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACG                                                    >  SRR4302533.2884579/1‑94 (MQ=60)

                                           CAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACG                                                    <  SRR4302533.4691151/94‑1 (MQ=60)

                                           CAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATACAACAGAGTGAAATGGGCTTCAGGACG                                                    >  SRR4302533.4369007/1‑94 (MQ=60)

                                            AATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGCGAAATGGGCTTCAGGACGC                                                   >  SRR4302533.1287568/1‑94 (MQ=60)

                                             ATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCA                                                  >  SRR4302533.5367885/1‑94 (MQ=60)

                                              TATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCAC                                                 <  SRR4302533.3948012/94‑1 (MQ=60)

                                              TATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCAC                                                 >  SRR4302533.401660/1‑94 (MQ=60)

                                               ATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACG                                                >  SRR4302533.2067500/1‑94 (MQ=60)

                                               ATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACG                                                <  SRR4302533.3066425/94‑1 (MQ=60)

                                                 TCTCCAGTTTACGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGAT                                              <  SRR4302533.5712602/94‑1 (MQ=60)

                                                  CTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATA                                             >  SRR4302533.3424954/1‑94 (MQ=60)

                                                   TCTAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTCCCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAG                                            <  SRR4302533.5913111/94‑1 (MQ=60)

                                                   TCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAG                                            >  SRR4302533.872691/1‑94 (MQ=60)

                                                   TCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAG                                            >  SRR4302533.4282039/1‑94 (MQ=60)

                                                   TCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAG                                            >  SRR4302533.132147/1‑94 (MQ=60)

                                                   TCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAG                                            >  SRR4302533.5500087/1‑94 (MQ=60)

                                                   TCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAG                                            <  SRR4302533.1058438/94‑1 (MQ=60)

                                                    CCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGA                                           <  SRR4302533.566950/94‑1 (MQ=60)

                                                     CAGTTTAAGCTCATGTTGCGCCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAG                                          <  SRR4302533.5294221/94‑1 (MQ=60)

                                                      AGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGCGTGAAATGGGCTTCAGGACGCACGATAGAGA                                         >  SRR4302533.5732465/1‑94 (MQ=60)

                                                       GTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAG                                        <  SRR4302533.5590370/94‑1 (MQ=60)

                                                       GTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAG                                        >  SRR4302533.4831448/1‑94 (MQ=60)

                                                       GTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAG                                        >  SRR4302533.2681747/1‑94 (MQ=60)

                                                       GTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAG                                        <  SRR4302533.3173343/94‑1 (MQ=60)

                                                         TTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTG                                      <  SRR4302533.2405467/94‑1 (MQ=60)

                                                         TTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTG                                      >  SRR4302533.2679703/1‑94 (MQ=60)

                                                          TAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGG                                     <  SRR4302533.5250615/94‑1 (MQ=60)

                                                          TAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGG                                     <  SRR4302533.1713952/94‑1 (MQ=60)

                                                          TAAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGG                                     >  SRR4302533.5721735/1‑94 (MQ=60)

                                                           AAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGA                                    >  SRR4302533.418814/1‑94 (MQ=60)

                                                           AAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGA                                    >  SRR4302533.3499245/1‑94 (MQ=60)

                                                           AAGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGA                                    <  SRR4302533.283311/94‑1 (MQ=60)

                                                            AGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAA                                   >  SRR4302533.780708/1‑94 (MQ=60)

                                                            AGCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAA                                   >  SRR4302533.3195772/1‑94 (MQ=60)

                                                             GCTCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAAT                                  <  SRR4302533.1248219/94‑1 (MQ=60)

                                                               TCATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGC                                >  SRR4302533.2549888/1‑94 (MQ=60)

                                                                CATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCT                               >  SRR4302533.2074116/1‑94 (MQ=60)

                                                                CATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGGGAAATGGGCTTCAGGACGACCGTTAGAGAGGGGAATGCT                               >  SRR4302533.3505779/1‑94 (MQ=60)

                                                                 ATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCT                              >  SRR4302533.5018351/1‑94 (MQ=60)

                                                                 ATGTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCT                              >  SRR4302533.3446826/1‑94 (MQ=60)

                                                                   GTTGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGG                            <  SRR4302533.6135956/94‑1 (MQ=60)

                                                                     TGCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCA                          >  SRR4302533.633738/1‑94 (MQ=60)

                                                                      GCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAG                         <  SRR4302533.5095402/94‑1 (MQ=60)

                                                                      GCACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAG                         <  SRR4302533.6317257/94‑1 (MQ=60)

                                                                       CACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCNGGCNGT                        >  SRR4302533.1653388/1‑94 (MQ=60)

                                                                        ACCTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTC                       >  SRR4302533.1745053/1‑94 (MQ=60)

                                                                          CTGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCT                     <  SRR4302533.5905971/94‑1 (MQ=60)

                                                                           TGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTG                    <  SRR4302533.5144946/94‑1 (MQ=60)

                                                                           TGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTG                    >  SRR4302533.3247070/1‑94 (MQ=60)

                                                                           TGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTG                    >  SRR4302533.1069958/1‑94 (MQ=60)

                                                                           TGACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTG                    <  SRR4302533.4850088/94‑1 (MQ=60)

                                                                            GACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGG                   <  SRR4302533.3317368/94‑1 (MQ=60)

                                                                             ACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGT                  >  SRR4302533.3502484/1‑94 (MQ=60)

                                                                             ACGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGT                  <  SRR4302533.3320629/94‑1 (MQ=60)

                                                                              CGAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTC                 <  SRR4302533.1910216/94‑1 (MQ=60)

                                                                               GAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGTAGTCCTGGTCC                <  SRR4302533.838050/94‑1 (MQ=60)

                                                                               GAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCC                <  SRR4302533.4155494/94‑1 (MQ=60)

                                                                               GAAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCC                <  SRR4302533.6254690/94‑1 (MQ=60)

                                                                                AAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCG               >  SRR4302533.3639196/1‑94 (MQ=60)

                                                                                AAGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCG               <  SRR4302533.5336667/94‑1 (MQ=60)

                                                                                 AGGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGG              <  SRR4302533.2413914/94‑1 (MQ=60)

                                                                                  GGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGctcggcattcctgcgaacgccttcgatctgctgta             <  SRR4302533.6071257/94‑36 (MQ=60)

                                                                                  GGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGT             <  SRR4302533.1553449/94‑1 (MQ=60)

                                                                                  GGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGT             <  SRR4302533.2684813/94‑1 (MQ=60)

                                                                                  GGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGT             <  SRR4302533.5703692/94‑1 (MQ=60)

                                                                                  GGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGT             <  SRR4302533.2143833/94‑1 (MQ=60)

                                                                                  GGAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGT             <  SRR4302533.4678618/94‑1 (MQ=60)

                                                                                   GAAACGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTG            >  SRR4302533.5586193/1‑94 (MQ=60)

                                                                                       CGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGC        >  SRR4302533.2084199/1‑94 (MQ=60)

                                                                                       CGCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGA        >  SRR4302533.3224859/1‑94 (MQ=60)

                                                                                        GCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGAC       <  SRR4302533.2892220/94‑1 (MQ=60)

                                                                                        GCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGAC       >  SRR4302533.2147616/1‑94 (MQ=60)

                                                                                        GCACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGAC       <  SRR4302533.4780705/94‑1 (MQ=60)

                                                                                         CACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACA      >  SRR4302533.3954287/1‑94 (MQ=60)

                                                                                         CACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACA      >  SRR4302533.2098140/1‑94 (MQ=60)

                                                                                         CACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACA      >  SRR4302533.1766282/1‑94 (MQ=60)

                                                                                         CACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACA      >  SRR4302533.4386977/1‑94 (MQ=60)

                                                                                          ACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACAT     >  SRR4302533.3763852/1‑94 (MQ=60)

                                                                                          ACGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACAT     >  SRR4302533.1932511/1‑94 (MQ=60)

                                                                                           CGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACATC    >  SRR4302533.1499512/1‑94 (MQ=60)

                                                                                           CGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACATC    <  SRR4302533.5391190/94‑1 (MQ=60)

                                                                                           CGTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACATC    >  SRR4302533.3277435/1‑94 (MQ=60)

                                                                                            GTGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACATCG   >  SRR4302533.2064873/1‑94 (MQ=60)

                                                                                             TGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACATCGA  <  SRR4302533.587954/94‑1 (MQ=60)

                                                                                             TGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACATCGA  <  SRR4302533.746098/94‑1 (MQ=60)

GGCGGCTCTGAAGGAAACTCTTCTACCCTGCTCTGTACTGGTTCAATATTCTCCAGTTTAAGCTCATGTTGCACCTGACGAAGGAAACGCACGCGTTTACCAAGGCTATCCAACAGAGTGAAATGGGCTTCAGGACGCACGATAGAGAGTGGAATGCCTGGCAGTCCTGGTCCGGTGCCGACATCGA  >  NC_000913/3920914‑3921100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`