Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,937,523	A→G	L239P (CTG→CCG)	yieO ←	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,937,523	0	A	G	100.0%	807.9 / NA	247	L239P (CTG→CCG)	yieO	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (127/120); total (127/120)

Only 100 of 251 total aligned reads displayed.

ACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGA  >  NC_000913/3937433‑3937612

aCGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGt                                                                                         >  2:5634442/1‑93 (MQ=255)

 cGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTa                                                                                        >  2:2460034/1‑93 (MQ=255)

   aTACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAAc                                                                                      >  1:4150287/1‑93 (MQ=255)

   aTACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAAc                                                                                      <  1:2272912/93‑1 (MQ=255)

   aTACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAAc                                                                                      <  1:5542188/93‑1 (MQ=255)

   aTACCGATCGAGAAAGTGCGGGGTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAAc                                                                                      >  2:5818091/1‑93 (MQ=255)

    tACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAAcc                                                                                     <  2:3839166/93‑1 (MQ=255)

       cGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGa                                                                                  >  1:1265390/1‑93 (MQ=255)

       cGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGa                                                                                  >  2:75400/1‑93 (MQ=255)

          tCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGc                                                                               >  2:1837105/1‑93 (MQ=255)

            gagaAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTg                                                                             <  1:2364957/93‑1 (MQ=255)

             agaAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTgg                                                                            <  1:3892811/93‑1 (MQ=255)

              gaAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGt                                                                           <  1:5320778/93‑1 (MQ=255)

              gaAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGt                                                                           >  1:5211369/1‑93 (MQ=255)

               aaaGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTg                                                                          >  2:4735501/1‑93 (MQ=255)

                 aGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGAc                                                                        >  2:4916526/1‑93 (MQ=255)

                  gTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTGGGCCTTGGGGAATATACAGAACCGGTACCCCGATCTTGCTGACa                                                                       >  1:5431977/1‑93 (MQ=255)

                   tGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACaa                                                                      >  1:1945936/1‑93 (MQ=255)

                    gCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAAt                                                                     >  2:4455787/1‑93 (MQ=255)

                    gCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAAt                                                                     >  1:348929/1‑93 (MQ=255)

                    gCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAAt                                                                     >  1:4651618/1‑93 (MQ=255)

                      gggTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTa                                                                   >  2:3677142/1‑93 (MQ=255)

                      gggTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTa                                                                   >  1:2021003/1‑93 (MQ=255)

                      gggTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTa                                                                   <  1:3283855/93‑1 (MQ=255)

                       ggTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAc                                                                  <  2:3508892/93‑1 (MQ=255)

                       ggTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAc                                                                  <  2:3025426/93‑1 (MQ=255)

                       ggTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAc                                                                  <  2:4290343/93‑1 (MQ=255)

                       ggTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAc                                                                  <  2:2157681/93‑1 (MQ=255)

                       ggTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAc                                                                  >  1:698008/1‑93 (MQ=255)

                       ggTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAc                                                                  >  1:3574314/1‑93 (MQ=255)

                        gTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAcc                                                                 >  1:1882879/1‑93 (MQ=255)

                         ttttAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCg                                                                >  2:3374147/1‑93 (MQ=255)

                           ttAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTc                                                              >  2:102513/1‑93 (MQ=255)

                            taaataaaTCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCa                                                             >  1:1701927/1‑93 (MQ=255)

                             aaataaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCaa                                                            >  1:2886882/1‑93 (MQ=255)

                             aaataaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCaa                                                            <  2:2008933/93‑1 (MQ=255)

                             aaataaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCaa                                                            >  2:1354380/1‑93 (MQ=255)

                              aataaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAg                                                           >  2:3657065/1‑93 (MQ=255)

                              aataaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAg                                                           <  2:2231078/93‑1 (MQ=255)

                               ataaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAgg                                                          <  1:5767638/93‑1 (MQ=255)

                               ataaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAgg                                                          >  2:3123523/1‑93 (MQ=255)

                               ataaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAgg                                                          >  2:5012733/1‑93 (MQ=255)

                                taaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGc                                                         <  2:2275655/93‑1 (MQ=255)

                                taaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGc                                                         <  1:5876822/93‑1 (MQ=255)

                                 aaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCa                                                        >  2:2176728/1‑93 (MQ=255)

                                 aaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCa                                                        >  2:4631693/1‑93 (MQ=255)

                                  aatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCaa                                                       <  2:3410523/93‑1 (MQ=255)

                                   atCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAAt                                                      >  2:5494619/1‑93 (MQ=255)

                                   atCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAAt                                                      >  2:1081796/1‑93 (MQ=255)

                                   atCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAAt                                                      >  2:6221087/1‑93 (MQ=255)

                                    tCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATc                                                     >  2:5076636/1‑93 (MQ=255)

                                    tCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATc                                                     <  1:5396234/93‑1 (MQ=255)

                                     cTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATcc                                                    <  1:5658208/93‑1 (MQ=255)

                                      tAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCa                                                   >  1:2620456/1‑93 (MQ=255)

                                      tAATGAAAGTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCa                                                   <  1:4480207/93‑1 (MQ=255)

                                           aaaTTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTgg                                              <  2:2568049/93‑1 (MQ=255)

                                            aaTTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGc                                             <  2:5658008/93‑1 (MQ=255)

                                            aaTTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGc                                             >  1:1958597/1‑93 (MQ=255)

                                               tAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGAc                                          <  2:4383641/93‑1 (MQ=255)

                                                aaTGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACa                                         >  1:3669175/1‑93 (MQ=255)

                                                aaTGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACa                                         >  1:2224444/1‑93 (MQ=255)

                                                 aTGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACaa                                        <  1:1590106/93‑1 (MQ=255)

                                                 aTGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACaa                                        <  1:158324/93‑1 (MQ=255)

                                                    ggTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCt                                     <  2:5456127/93‑1 (MQ=255)

                                                     gTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCtt                                    >  1:4308275/1‑93 (MQ=255)

                                                      tttGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGCGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCttt                                   >  1:5047921/1‑93 (MQ=255)

                                                       ttGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCtttt                                  >  1:2805618/1‑93 (MQ=255)

                                                        tGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTc                                 <  1:5594611/93‑1 (MQ=255)

                                                        tGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTc                                 <  1:2754162/93‑1 (MQ=255)

                                                          gcgtgcgtCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTccc                               <  2:1566481/93‑1 (MQ=255)

                                                          gcgtgcgtCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTccc                               <  2:3468177/93‑1 (MQ=255)

                                                           cgtgcgtCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTcccc                              >  1:514494/1‑93 (MQ=255)

                                                            gtgcgtCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCg                             >  1:3644519/1‑93 (MQ=255)

                                                             tgcgtCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGa                            >  2:1487233/1‑93 (MQ=255)

                                                              gcgtCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGaa                           <  1:3258718/93‑1 (MQ=255)

                                                                gtcgtGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATa                         <  2:4601790/93‑1 (MQ=255)

                                                                 tcgtGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAg                        >  1:898614/1‑93 (MQ=255)

                                                                 tcgtGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAg                        >  1:6027353/1‑93 (MQ=255)

                                                                  cgtGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGc                       >  2:2661907/1‑93 (MQ=255)

                                                                   gtGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGct                      <  1:536148/93‑1 (MQ=255)

                                                                    tGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGctc                     <  2:4148601/93‑1 (MQ=255)

                                                                    tGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGctc                     >  1:271280/1‑93 (MQ=255)

                                                                    tGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGctc                     >  2:1285801/1‑93 (MQ=255)

                                                                    tGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGctc                     <  1:6277667/93‑1 (MQ=255)

                                                                      cATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTa                   >  1:3047180/1‑93 (MQ=255)

                                                                       aTGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTAt                  <  2:668029/93‑1 (MQ=255)

                                                                        tGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTAtt                 >  2:4265489/1‑93 (MQ=255)

                                                                        tGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTAtt                 >  2:2938802/1‑93 (MQ=255)

                                                                         ggAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTc                <  2:4810301/93‑1 (MQ=255)

                                                                         gaagaATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTAtac                <  2:3973737/91‑3 (MQ=255)

                                                                           agaATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCg              >  1:1464024/1‑93 (MQ=255)

                                                                            gaATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGc             >  2:3089932/1‑93 (MQ=255)

                                                                              atatAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCtt           >  1:761010/1‑93 (MQ=255)

                                                                                  agagAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgaga       >  1:610785/1‑93 (MQ=255)

                                                                                  agagAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgaga       >  1:4980131/1‑93 (MQ=255)

                                                                                   gagaAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa      <  1:4706444/93‑1 (MQ=255)

                                                                                   gagaAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa      <  2:2348792/93‑1 (MQ=255)

                                                                                      aaGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaagag   <  1:648276/93‑1 (MQ=255)

                                                                                      aaGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaagag   <  1:3925560/93‑1 (MQ=255)

                                                                                       aGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaagaga  <  2:587288/93‑1 (MQ=255)

ACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGA  >  NC_000913/3937433‑3937612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAA  >  NC_000913/3937430‑3937616

CCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCG                                                                                               >  SRR4302533.5810228/1‑94 (MQ=60)

CCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCG                                                                                               <  SRR4302533.4888011/94‑1 (MQ=60)

 CTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGG                                                                                              <  SRR4302533.3621440/94‑1 (MQ=60)

 CTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGG                                                                                              >  SRR4302533.5310735/1‑94 (MQ=60)

 CTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGG                                                                                              >  SRR4302533.3659408/1‑94 (MQ=60)

     GATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAAC                                                                                          >  SRR4302533.5711328/1‑94 (MQ=60)

     GATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAAC                                                                                          >  SRR4302533.4175429/1‑94 (MQ=60)

      ATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACC                                                                                         <  SRR4302533.5575660/94‑1 (MQ=60)

      ATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACC                                                                                         <  SRR4302533.2286979/94‑1 (MQ=60)

       TACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCC                                                                                        <  SRR4302533.6093229/94‑1 (MQ=60)

        ACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCG                                                                                       <  SRR4302533.2895479/94‑1 (MQ=60)

        ACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCG                                                                                       >  SRR4302533.5035315/1‑94 (MQ=60)

         CCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGA                                                                                      >  SRR4302533.1272960/1‑94 (MQ=60)

          CGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGAT                                                                                     <  SRR4302533.4685718/94‑1 (MQ=60)

           GATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATG                                                                                    <  SRR4302533.3894741/94‑1 (MQ=60)

           GATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATG                                                                                    <  SRR4302533.1841614/94‑1 (MQ=60)

            ATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGC                                                                                   <  SRR4302533.4221534/94‑1 (MQ=60)

             TCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCT                                                                                  <  SRR4302533.5517414/94‑1 (MQ=60)

             TCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCT                                                                                  <  SRR4302533.3640115/94‑1 (MQ=60)

               GAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGG                                                                                <  SRR4302533.2379587/94‑1 (MQ=60)

               GAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGG                                                                                >  SRR4302533.1540634/1‑94 (MQ=60)

                AGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGT                                                                               <  SRR4302533.5356152/94‑1 (MQ=60)

                AGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGT                                                                               <  SRR4302533.3916570/94‑1 (MQ=60)

                AGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGT                                                                               >  SRR4302533.5242754/1‑94 (MQ=60)

                AGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGG                                                                               >  SRR4302533.3942308/1‑94 (MQ=60)

                 GAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTG                                                                              <  SRR4302533.5352666/94‑1 (MQ=60)

                 GAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTG                                                                              <  SRR4302533.3298006/94‑1 (MQ=60)

                  AAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGA                                                                             >  SRR4302533.3665594/1‑94 (MQ=60)

                    AGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACA                                                                           <  SRR4302533.3987154/94‑1 (MQ=60)

                    AGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACA                                                                           >  SRR4302533.1599763/1‑94 (MQ=60)

                     GTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAA                                                                          >  SRR4302533.1957801/1‑94 (MQ=60)

                      TGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAAT                                                                         >  SRR4302533.4679804/1‑94 (MQ=60)

                      TGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAAT                                                                         >  SRR4302533.351059/1‑94 (MQ=60)

                        CGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTA                                                                       <  SRR4302533.3434133/94‑1 (MQ=60)

                        CGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTA                                                                       >  SRR4302533.2033449/1‑94 (MQ=60)

                         GGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAC                                                                      >  SRR4302533.1693320/1‑94 (MQ=60)

                         GGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAC                                                                      <  SRR4302533.3304125/94‑1 (MQ=60)

                         GGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAC                                                                      >  SRR4302533.702137/1‑94 (MQ=60)

                         GGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTAC                                                                      >  SRR4302533.3596344/1‑94 (MQ=60)

                          GGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACC                                                                     <  SRR4302533.3766438/94‑1 (MQ=60)

                          GGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACC                                                                     <  SRR4302533.6324258/94‑1 (MQ=60)

                          GGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACC                                                                     >  SRR4302533.1894376/1‑94 (MQ=60)

                           GTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCG                                                                    >  SRR4302533.5727622/1‑94 (MQ=60)

                           GTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCG                                                                    >  SRR4302533.5968997/1‑94 (MQ=60)

                            TTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGT                                                                   >  SRR4302533.962726/1‑94 (MQ=60)

                             TTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTC                                                                  <  SRR4302533.2854260/94‑1 (MQ=60)

                             TTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTC                                                                  <  SRR4302533.1933644/94‑1 (MQ=60)

                              TTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCA                                                                 >  SRR4302533.1712239/1‑94 (MQ=60)

                               TAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAA                                                                >  SRR4302533.2904633/1‑94 (MQ=60)

                                AAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAG                                                               <  SRR4302533.681065/94‑1 (MQ=60)

                                AAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAG                                                               >  SRR4302533.800829/1‑94 (MQ=60)

                                  ATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGC                                                             <  SRR4302533.5802455/94‑1 (MQ=60)

                                   TAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCA                                                            >  SRR4302533.5381669/1‑94 (MQ=60)

                                   TAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCA                                                            <  SRR4302533.5912348/94‑1 (MQ=60)

                                      ATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATC                                                         <  SRR4302533.294668/94‑1 (MQ=60)

                                       TCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCC                                                        <  SRR4302533.3679749/94‑1 (MQ=60)

                                       TCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCC                                                        <  SRR4302533.5428659/94‑1 (MQ=60)

                                       TCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCC                                                        <  SRR4302533.2244007/94‑1 (MQ=60)

                                        CTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCA                                                       >  SRR4302533.825507/1‑94 (MQ=60)

                                        CTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCA                                                       >  SRR4302533.4378675/1‑94 (MQ=60)

                                        CTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCA                                                       >  SRR4302533.2636540/1‑94 (MQ=60)

                                        CTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCA                                                       <  SRR4302533.5692399/94‑1 (MQ=60)

                                         TAATGAAAGTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAG                                                      <  SRR4302533.4507311/94‑1 (MQ=60)

                                          AATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGC                                                     >  SRR4302533.2289940/1‑94 (MQ=60)

                                           ATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCT                                                    <  SRR4302533.5847146/94‑1 (MQ=60)

                                           ATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCT                                                    <  SRR4302533.6057649/94‑1 (MQ=60)

                                            TGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTG                                                   <  SRR4302533.3251089/94‑1 (MQ=60)

                                            TGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTG                                                   <  SRR4302533.5195483/94‑1 (MQ=60)

                                             GAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGG                                                  <  SRR4302533.5458607/94‑1 (MQ=60)

                                              AAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGC                                                 <  SRR4302533.2031260/94‑1 (MQ=60)

                                              AAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGC                                                 >  SRR4302533.1970552/1‑94 (MQ=60)

                                              AAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGC                                                 <  SRR4302533.3569872/94‑1 (MQ=60)

                                                ATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGA                                               >  SRR4302533.4837215/1‑94 (MQ=60)

                                                  TAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACA                                             >  SRR4302533.5602636/1‑94 (MQ=60)

                                                  TAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACA                                             >  SRR4302533.4157935/1‑94 (MQ=60)

                                                  TAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACA                                             >  SRR4302533.6257695/1‑94 (MQ=60)

                                                  TAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACA                                             >  SRR4302533.2238180/1‑94 (MQ=60)

                                                  TAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACA                                             >  SRR4302533.3691730/1‑94 (MQ=60)

                                                   AATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAA                                            <  SRR4302533.2753616/94‑1 (MQ=60)

                                                   AATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAA                                            >  SRR4302533.1990382/1‑94 (MQ=60)

                                                    ATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAAT                                           <  SRR4302533.159334/94‑1 (MQ=60)

                                                    ATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAAT                                           <  SRR4302533.1599725/94‑1 (MQ=60)

                                                     TGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATC                                          <  SRR4302533.753003/94‑1 (MQ=60)

                                                      GGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCT                                         <  SRR4302533.5142517/94‑1 (MQ=60)

                                                      GGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCT                                         >  SRR4302533.677935/1‑94 (MQ=60)

                                                       GGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTT                                        >  SRR4302533.4334205/1‑94 (MQ=60)

                                                        GTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGCGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTT                                       >  SRR4302533.5078457/1‑94 (MQ=60)

                                                         TTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTT                                      <  SRR4302533.5058001/94‑1 (MQ=60)

                                                         TTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTT                                      >  SRR4302533.2822886/1‑94 (MQ=60)

                                                           TGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCC                                    <  SRR4302533.5690917/94‑1 (MQ=60)

                                                           TGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCC                                    <  SRR4302533.5628409/94‑1 (MQ=60)

                                                           TGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCC                                    <  SRR4302533.4444155/94‑1 (MQ=60)

                                                           TGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCC                                    <  SRR4302533.2771053/94‑1 (MQ=60)

                                                             GCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCC                                  >  SRR4302533.1967196/1‑94 (MQ=60)

                                                             GCGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCC                                  >  SRR4302533.517551/1‑94 (MQ=60)

                                                              CGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCG                                 >  SRR4302533.3666927/1‑94 (MQ=60)

                                                              CGTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCG                                 <  SRR4302533.5441778/94‑1 (MQ=60)

                                                               GTGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGA                                >  SRR4302533.4692316/1‑94 (MQ=60)

                                                                TGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAA                               <  SRR4302533.2531539/94‑1 (MQ=60)

                                                                TGCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAA                               <  SRR4302533.2698146/94‑1 (MQ=60)

                                                                 GCGTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAAT                              <  SRR4302533.3278819/94‑1 (MQ=60)

                                                                   GTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAG                            >  SRR4302533.6189524/1‑94 (MQ=60)

                                                                   GTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAG                            >  SRR4302533.6063877/1‑94 (MQ=60)

                                                                   GTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAG                            >  SRR4302533.903887/1‑94 (MQ=60)

                                                                   GTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAG                            >  SRR4302533.5613943/1‑94 (MQ=60)

                                                                   GTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAG                            >  SRR4302533.3412995/1‑94 (MQ=60)

                                                                   GTCGTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAG                            <  SRR4302533.2778819/94‑1 (MQ=60)

                                                                      GTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTC                         >  SRR4302533.1486602/1‑94 (MQ=60)

                                                                      GTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTC                         >  SRR4302533.272931/1‑94 (MQ=60)

                                                                      GTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTC                         <  SRR4302533.5427730/94‑1 (MQ=60)

                                                                      GTGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTC                         <  SRR4302533.539332/94‑1 (MQ=60)

                                                                       TGCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCT                        <  SRR4302533.6315148/94‑1 (MQ=60)

                                                                        GCATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTA                       >  SRR4302533.3065836/1‑94 (MQ=60)

                                                                         CATGGAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTAT                      >  SRR4302533.2766696/1‑94 (MQ=60)

                                                                             GAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCG                  >  SRR4302533.1472848/1‑94 (MQ=60)

                                                                             GAGAATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCG                  <  SRR4302533.4633151/94‑1 (MQ=60)

                                                                                AATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTT               >  SRR4302533.765489/1‑94 (MQ=60)

                                                                                AATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTT               <  SRR4302533.2249424/94‑1 (MQ=60)

                                                                                 ATATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTG              >  SRR4302533.520761/1‑94 (MQ=60)

                                                                                  TATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGA             >  SRR4302533.1901371/1‑94 (MQ=60)

                                                                                   ATAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAG            >  SRR4302533.2165903/1‑94 (MQ=60)

                                                                                    TAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGA           >  SRR4302533.5010327/1‑94 (MQ=60)

                                                                                    TAGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGA           >  SRR4302533.614375/1‑94 (MQ=60)

                                                                                     AGAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAA          >  SRR4302533.1599168/1‑94 (MQ=60)

                                                                                      GAGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAG         <  SRR4302533.4734968/94‑1 (MQ=60)

                                                                                       AGAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGA        >  SRR4302533.3073694/1‑94 (MQ=60)

                                                                                        GAAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAG       >  SRR4302533.2396143/1‑94 (MQ=60)

                                                                                         AAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGA      <  SRR4302533.652099/94‑1 (MQ=60)

                                                                                         AAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGA      <  SRR4302533.3949530/94‑1 (MQ=60)

                                                                                         AAGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGA      >  SRR4302533.1353116/1‑94 (MQ=60)

                                                                                          AGCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAA     <  SRR4302533.5324153/94‑1 (MQ=60)

                                                                                           GCGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAAC    <  SRR4302533.917534/94‑1 (MQ=60)

                                                                                            CGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACA   <  SRR4302533.6145391/94‑1 (MQ=60)

                                                                                            CGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACA   <  SRR4302533.2562603/94‑1 (MQ=60)

                                                                                            CGGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACA   >  SRR4302533.4412149/1‑94 (MQ=60)

                                                                                             GGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAA  <  SRR4302533.5258600/94‑1 (MQ=60)

                                                                                             GGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAA  <  SRR4302533.3569298/94‑1 (MQ=60)

                                                                                             GGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAA  <  SRR4302533.5793493/94‑1 (MQ=60)

                                                                                             GGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAA  >  SRR4302533.1409690/1‑94 (MQ=60)

CCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAA  >  NC_000913/3937430‑3937616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`