Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,950,224 |
A→G |
I40V (ATC→GTC) |
ilvE → |
branched‑chain amino‑acid aminotransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,950,224 | 0 | A | G | 100.0%
| 789.2
/ NA
| 245 | I40V (ATC→GTC) | ilvE | branched‑chain amino‑acid aminotransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (109/136); total (109/136) |
Only 100 of 251 total aligned reads displayed.
TGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCATCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGC > NC_000913/3950134‑3950313
|
ggatCAATGGGCAGATGGGTCGCAAGGAAGACGCGAAAGTGCATGTGATGTCGCACGCGCTGCACAATGGCTCTTCGGTTTTTGAAGGCGTcc < 2:4769572/90‑1 (MQ=255)
ggTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTcc < 2:6236564/93‑1 (MQ=255)
ggTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTcc < 1:5098659/93‑1 (MQ=255)
ggTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTcc > 2:173343/1‑93 (MQ=255)
gTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCg < 1:5555908/93‑1 (MQ=255)
ttCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGt < 2:1626691/93‑1 (MQ=255)
tCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGtt < 2:2719458/93‑1 (MQ=255)
aaTGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGc < 2:34956/93‑1 (MQ=255)
aaTGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGc < 1:310054/93‑1 (MQ=255)
aaTGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGc > 2:2737626/1‑93 (MQ=255)
aTGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCt < 1:1853991/93‑1 (MQ=255)
aTGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCt < 1:2768357/93‑1 (MQ=255)
tGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTa > 2:5103102/1‑93 (MQ=255)
ggggAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTAc < 1:419496/93‑1 (MQ=255)
gagaTGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGAc < 2:4938730/93‑1 (MQ=255)
gagaTGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGAc > 2:1896926/1‑93 (MQ=255)
gagaTGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATCGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGAc > 1:5004342/1‑93 (MQ=255)
agaTGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACt < 1:4101280/93‑1 (MQ=255)
aTGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCg > 2:1182936/1‑93 (MQ=255)
aTGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGCTTTTGAAGGCGTCCGTTGCTACGACTCg > 2:3040093/1‑93 (MQ=255)
tGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGc > 2:2382848/1‑93 (MQ=255)
cGCTGGGAAGACGCGAATGTGCATGTGATGTCGCACGCGCTGCTCTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACaaa < 2:4079862/93‑1 (MQ=255)
cGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACaaa < 2:4374981/93‑1 (MQ=255)
cGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACaaa < 2:4427936/93‑1 (MQ=255)
gCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAg < 1:6055210/93‑1 (MQ=255)
gCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAg > 1:3728769/1‑93 (MQ=255)
gCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAg < 1:4809482/93‑1 (MQ=255)
tGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGa > 2:5498333/1‑93 (MQ=255)
tGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGa < 1:2514956/93‑1 (MQ=255)
gggAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGAc < 2:4600530/93‑1 (MQ=255)
gggAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGAc < 2:2556663/93‑1 (MQ=255)
ggAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGAcc < 1:116565/93‑1 (MQ=255)
ggAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGAcc > 2:730765/1‑93 (MQ=255)
aaGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCgg > 1:904239/1‑93 (MQ=255)
aGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGt < 2:5969825/93‑1 (MQ=255)
aGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGt > 1:5604334/1‑93 (MQ=255)
ccgcgAAGGTGCATGTGATGTCGCACGCGCTGCGCTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTg < 2:197440/92‑1 (MQ=255)
aCGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTg < 2:108732/93‑1 (MQ=255)
cgcgAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGt > 1:1939079/1‑93 (MQ=255)
gcgAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTa < 1:3370492/93‑1 (MQ=255)
ggAAGTTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTAt < 2:3856396/92‑1 (MQ=255)
gAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTAtt > 1:1023940/1‑93 (MQ=255)
gAAGGTGCATGTGATGTCGCACGAGATGCACTATGGCACTACGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTAtt < 1:4955637/93‑1 (MQ=255)
aaGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTc < 1:213254/93‑1 (MQ=255)
gTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGc > 1:3342424/1‑93 (MQ=255)
gTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGc > 2:2207183/1‑93 (MQ=255)
ggCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGcc < 1:3832754/92‑1 (MQ=255)
gCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCa > 2:5896862/1‑93 (MQ=255)
aTGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATc < 2:74133/93‑1 (MQ=255)
aTGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATc < 2:2102304/93‑1 (MQ=255)
aTGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATc < 2:1472495/93‑1 (MQ=255)
tgATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTg > 1:4382835/1‑93 (MQ=255)
gATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGa < 2:5790555/93‑1 (MQ=255)
tGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGc < 1:397377/93‑1 (MQ=255)
tGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGc > 2:5400643/1‑93 (MQ=255)
tCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCat > 1:2320814/1‑93 (MQ=255)
cGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCata < 2:3136390/93‑1 (MQ=255)
cGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTACGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCata > 2:5134627/1‑93 (MQ=255)
gCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCatat > 2:4174419/1‑93 (MQ=255)
gCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCatat < 1:467453/93‑1 (MQ=255)
cACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATg < 1:4902540/93‑1 (MQ=255)
aCGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGc < 1:2270160/93‑1 (MQ=255)
cgcgCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCa < 1:3016003/93‑1 (MQ=255)
cgcgCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCa < 1:5775689/93‑1 (MQ=255)
cgcgCTGCACTATGGCACGTCGGTTTTTGAAGGCGTCCTTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCa < 1:130071/93‑1 (MQ=255)
cgcTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGc < 2:1793141/93‑1 (MQ=255)
cgcTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGc < 1:1697368/93‑1 (MQ=255)
gcTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCg > 1:4419727/1‑93 (MQ=255)
gcTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCg < 2:167747/93‑1 (MQ=255)
cTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGt < 2:5589163/93‑1 (MQ=255)
tGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTc > 2:3724202/1‑93 (MQ=255)
gCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCt > 1:2021857/1‑93 (MQ=255)
cACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTg < 1:269591/93‑1 (MQ=255)
aCTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTATGc > 1:2441068/1‑93 (MQ=255)
cTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCa > 1:1520313/1‑93 (MQ=255)
tATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCAt > 2:3183455/1‑93 (MQ=255)
tATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCAt > 1:5281384/1‑93 (MQ=255)
aTGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATg < 2:4284409/93‑1 (MQ=255)
tGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGa < 1:3131514/93‑1 (MQ=255)
tGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGa < 1:6242487/93‑1 (MQ=255)
tGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGa < 2:4235566/93‑1 (MQ=255)
tGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGa < 1:3698159/93‑1 (MQ=255)
ggCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGAc > 1:4546177/1‑93 (MQ=255)
aCTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTcc < 2:1496473/93‑1 (MQ=255)
aCTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTcc < 2:4856423/93‑1 (MQ=255)
cTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCg > 2:3566509/1‑93 (MQ=255)
gTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCaaa > 1:630004/1‑93 (MQ=255)
tttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCaaaa > 1:4347342/1‑93 (MQ=255)
tttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCaaaa > 2:6212856/1‑93 (MQ=255)
tttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCaaaa > 1:3213566/1‑93 (MQ=255)
tttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCaaaa < 1:1865973/93‑1 (MQ=255)
ttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAt > 2:2918914/1‑93 (MQ=255)
ttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAt > 1:5385607/1‑93 (MQ=255)
ttttGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAt < 1:5189646/93‑1 (MQ=255)
tGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTa < 2:803360/93‑1 (MQ=255)
aGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCg < 1:5244905/93‑1 (MQ=255)
ggCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGc < 1:854325/93‑1 (MQ=255)
ggCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGc > 1:590491/1‑93 (MQ=255)
ggCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGc < 1:4260108/93‑1 (MQ=255)
ggCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGc > 1:3800719/1‑93 (MQ=255)
|
TGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCATCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGC > NC_000913/3950134‑3950313
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCATCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTTCC > NC_000913/3950131‑3950317
|
ATTTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCG < SRR4302533.1046062/94‑1 (MQ=60)
TTTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGT < SRR4302533.2217139/94‑1 (MQ=60)
GGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCG < SRR4302533.5129463/94‑1 (MQ=60)
GGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCG < SRR4302533.496105/94‑1 (MQ=60)
GTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGT < SRR4302533.5589483/94‑1 (MQ=60)
TTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTT < SRR4302533.4432288/94‑1 (MQ=60)
CAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGC > SRR4302533.6326488/1‑94 (MQ=60)
CAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGC > SRR4302533.1274315/1‑94 (MQ=60)
AATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCT > SRR4302533.168808/1‑94 (MQ=60)
AATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCT < SRR4302533.311951/94‑1 (MQ=60)
AATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCT < SRR4302533.4851721/94‑1 (MQ=60)
ATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTA < SRR4302533.1865294/94‑1 (MQ=60)
ATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTA < SRR4302533.2785342/94‑1 (MQ=60)
TGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTAC < SRR4302533.3850393/94‑1 (MQ=60)
GGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACG < SRR4302533.864635/94‑1 (MQ=60)
GGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACG < SRR4302533.422010/94‑1 (MQ=60)
GGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGA < SRR4302533.5262304/94‑1 (MQ=60)
GGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATCGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGAC > SRR4302533.5034670/1‑94 (MQ=60)
GAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACT < SRR4302533.3781423/94‑1 (MQ=60)
GAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACT > SRR4302533.2779132/1‑94 (MQ=60)
GAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACT < SRR4302533.3993200/94‑1 (MQ=60)
AGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTC < SRR4302533.4126238/94‑1 (MQ=60)
AGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTC > SRR4302533.4336471/1‑94 (MQ=60)
AGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTC > SRR4302533.5421914/1‑94 (MQ=60)
ATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGC > SRR4302533.3194127/1‑94 (MQ=60)
GGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCAC < SRR4302533.5064811/94‑1 (MQ=60)
GGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCAC > SRR4302533.5288439/1‑94 (MQ=60)
GGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCAC > SRR4302533.5033284/1‑94 (MQ=60)
GGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCAC < SRR4302533.232913/94‑1 (MQ=60)
TCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAA < SRR4302533.1514472/94‑1 (MQ=60)
TCGCTGGGAAGACGCGAAGGTGCATGAGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAA < SRR4302533.3519899/94‑1 (MQ=60)
CGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAG > SRR4302533.3751642/1‑94 (MQ=60)
GCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGG < SRR4302533.6091877/94‑1 (MQ=60)
GCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGG < SRR4302533.4838634/94‑1 (MQ=60)
GCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGA > SRR4302533.1869925/1‑94 (MQ=60)
TGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGAC < SRR4302533.2530454/94‑1 (MQ=60)
TGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGAC < SRR4302533.853146/94‑1 (MQ=60)
GGTAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACC < SRR4302533.3338225/94‑1 (MQ=60)
GGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTTTGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACC < SRR4302533.1585346/94‑1 (MQ=60)
GGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACC < SRR4302533.4414889/94‑1 (MQ=60)
GGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCG < SRR4302533.117308/94‑1 (MQ=60)
GAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGG > SRR4302533.909541/1‑94 (MQ=60)
AAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGT > SRR4302533.4140473/1‑94 (MQ=60)
AAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGT > SRR4302533.5638194/1‑94 (MQ=60)
AGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTT < SRR4302533.4492126/94‑1 (MQ=60)
AGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTT < SRR4302533.2043633/94‑1 (MQ=60)
ACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGT < SRR4302533.3149864/94‑1 (MQ=60)
ACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGT > SRR4302533.1950904/1‑94 (MQ=60)
ACGCGAAGGTGCATGTGATGTAGCACGCGCTGCACTATGGCATTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGT < SRR4302533.400321/94‑1 (MQ=60)
CGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTA > SRR4302533.196047/1‑94 (MQ=60)
GCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTAT < SRR4302533.3391308/94‑1 (MQ=60)
GCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTAT > SRR4302533.584128/1‑94 (MQ=60)
CGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATT > SRR4302533.5015640/1‑94 (MQ=60)
CGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATT > SRR4302533.3287295/1‑94 (MQ=60)
CGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATT > SRR4302533.1029958/1‑94 (MQ=60)
GAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTC < SRR4302533.2360871/94‑1 (MQ=60)
GAAGGTGCATGTGATGTCGCACGAGATGCACTATGGCACTACGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTC < SRR4302533.4985654/94‑1 (MQ=60)
AAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCC < SRR4302533.214595/94‑1 (MQ=60)
AAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCC > SRR4302533.4382077/1‑94 (MQ=60)
GGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGC > SRR4302533.3363082/1‑94 (MQ=60)
TGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCA > SRR4302533.5956610/1‑94 (MQ=60)
TGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCA < SRR4302533.3747124/94‑1 (MQ=60)
GGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCA < SRR4302533.3856180/94‑1 (MQ=60)
ATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCG > SRR4302533.5195551/1‑94 (MQ=60)
TGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGT > SRR4302533.5753184/1‑94 (MQ=60)
GTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTG > SRR4302533.4409295/1‑94 (MQ=60)
GTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTG < SRR4302533.2605070/94‑1 (MQ=60)
TGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGA < SRR4302533.2789154/94‑1 (MQ=60)
GATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAG < SRR4302533.312003/94‑1 (MQ=60)
GATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAG > SRR4302533.1268285/1‑94 (MQ=60)
ATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGC > SRR4302533.6159296/1‑94 (MQ=60)
ATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGC > SRR4302533.4357292/1‑94 (MQ=60)
TGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCA < SRR4302533.399780/94‑1 (MQ=60)
GTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCAT < SRR4302533.4231274/94‑1 (MQ=60)
GTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCAT < SRR4302533.5175621/94‑1 (MQ=60)
GTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCAT > SRR4302533.2335179/1‑94 (MQ=60)
GCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATG < SRR4302533.470245/94‑1 (MQ=60)
CACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGC < SRR4302533.4932246/94‑1 (MQ=60)
CCGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCA < SRR4302533.1869057/94‑1 (MQ=60)
ACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCA < SRR4302533.3803713/94‑1 (MQ=60)
ACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCA < SRR4302533.2284204/94‑1 (MQ=60)
ACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCA > SRR4302533.284921/1‑94 (MQ=60)
CGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAG > SRR4302533.608057/1‑94 (MQ=60)
CGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAG < SRR4302533.5810571/94‑1 (MQ=60)
CGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAG > SRR4302533.5628451/1‑94 (MQ=60)
CGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAG < SRR4302533.3034450/94‑1 (MQ=60)
CGCGCTGCACTATGGCACGTCGGTTTTTGAAGGCGTCCTTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAG < SRR4302533.130884/94‑1 (MQ=60)
GCGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGC < SRR4302533.2006529/94‑1 (MQ=60)
CGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCG < SRR4302533.1707650/94‑1 (MQ=60)
CGCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCG > SRR4302533.4446449/1‑94 (MQ=60)
GCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGT > SRR4302533.5329196/1‑94 (MQ=60)
GCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGT < SRR4302533.5282201/94‑1 (MQ=60)
GCTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGT > SRR4302533.3380815/1‑94 (MQ=60)
CTGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTC < SRR4302533.4214146/94‑1 (MQ=60)
TGCACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCT > SRR4302533.2034310/1‑94 (MQ=60)
CACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGC < SRR4302533.271228/94‑1 (MQ=60)
CACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTATGC > SRR4302533.2456140/1‑94 (MQ=60)
ACTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCA > SRR4302533.1529466/1‑94 (MQ=60)
CTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCAT < SRR4302533.4846044/94‑1 (MQ=60)
CTATGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCAT > SRR4302533.5313030/1‑94 (MQ=60)
ATGGCACTTTGGTTTTTGAAGGCGTCCGTTGCTACGACGCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGA < SRR4302533.4773275/94‑1 (MQ=60)
TGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGAC < SRR4302533.3720873/94‑1 (MQ=60)
TGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGAC < SRR4302533.6279858/94‑1 (MQ=60)
TGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGAC < SRR4302533.6279860/94‑1 (MQ=60)
TGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGAC > SRR4302533.4573710/1‑94 (MQ=60)
TGGCACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGAC < SRR4302533.3150767/94‑1 (MQ=60)
CACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCC < SRR4302533.215080/94‑1 (MQ=60)
ACTTCGGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCG > SRR4302533.3877674/1‑94 (MQ=60)
GGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAA > SRR4302533.3470475/1‑94 (MQ=60)
GGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAA > SRR4302533.222362/1‑94 (MQ=60)
GGTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAA > SRR4302533.633707/1‑94 (MQ=60)
GTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAA > SRR4302533.256431/1‑94 (MQ=60)
GTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAA > SRR4302533.4373549/1‑94 (MQ=60)
GTTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAA > SRR4302533.3233373/1‑94 (MQ=60)
TTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAT > SRR4302533.5417965/1‑94 (MQ=60)
TTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAT > SRR4302533.4642391/1‑94 (MQ=60)
TTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAT < SRR4302533.5575571/94‑1 (MQ=60)
TTTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAAT < SRR4302533.1877354/94‑1 (MQ=60)
TTTTGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATC < SRR4302533.5220960/94‑1 (MQ=60)
TGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTAT > SRR4302533.4639927/1‑94 (MQ=60)
TGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTAT > SRR4302533.1060374/1‑94 (MQ=60)
TGAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTAT > SRR4302533.688638/1‑94 (MQ=60)
GAAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATC < SRR4302533.1786230/94‑1 (MQ=60)
AAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCG < SRR4302533.570671/94‑1 (MQ=60)
AAGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCG < SRR4302533.1933568/94‑1 (MQ=60)
AGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGC > SRR4302533.3823981/1‑94 (MQ=60)
AGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGC > SRR4302533.593976/1‑94 (MQ=60)
AGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGC < SRR4302533.2528859/94‑1 (MQ=60)
AGGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGC < SRR4302533.5276428/94‑1 (MQ=60)
GGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCT < SRR4302533.4285779/94‑1 (MQ=60)
GGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCT < SRR4302533.2347088/94‑1 (MQ=60)
GGCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCT < SRR4302533.859331/94‑1 (MQ=60)
GCGTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTT < SRR4302533.1452211/94‑1 (MQ=60)
GTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTTCC > SRR4302533.5727187/1‑94 (MQ=60)
GTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTTCC < SRR4302533.3662534/94‑1 (MQ=60)
GTCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTTCC > SRR4302533.173495/1‑94 (MQ=60)
|
ATTTGGTTCAATGGGGAGATGGTTCGCTGGGAAGACGCGAAGGTGCATGTGATGTCGCACGCGCTGCACTATGGCACTTCGGTTTTTGAAGGCATCCGTTGCTACGACTCGCACAAAGGACCGGTTGTATTCCGCCATCGTGAGCATATGCAGCGTCTGCATGACTCCGCCAAAATCTATCGCTTCC > NC_000913/3950131‑3950317
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
