Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,954,504 |
T→C |
intergenic (+8/+44) |
ilvA → / ← ilvY |
threonine deaminase/IlvY |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,954,504 | 0 | T | C | 99.5%
| 591.6
/ NA
| 193 | intergenic (+8/+44) | ilvA/ilvY | threonine deaminase/IlvY |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (91/101); minor base A (1/0); total (92/101) |
| Fisher's exact test for biased strand distribution p-value = 4.77e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 210 total aligned reads displayed.
TCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGC > NC_000913/3954414‑3954593
|
tCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCTCGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGc < 2:2931973/93‑1 (MQ=255)
cGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGcc < 1:935985/93‑1 (MQ=255)
gAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCt > 1:4906858/1‑93 (MQ=255)
gAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCt > 1:4077891/1‑93 (MQ=255)
aaaCCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTg > 1:3671332/1‑93 (MQ=255)
accccGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGa < 2:2801082/91‑1 (MQ=255)
aaCCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAAAGCCTGa > 1:5298418/1‑93 (MQ=255)
aCCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCCGGTTAGGGGAAAACGACTGAt > 1:5431812/1‑93 (MQ=255)
cccGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATa < 2:36705/93‑1 (MQ=255)
cccGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATa < 2:5274483/93‑1 (MQ=255)
cccGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATa > 1:3743402/1‑93 (MQ=255)
cccGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATa > 1:6121125/1‑93 (MQ=255)
ccGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGGTAGGGAAAAAACACTGATAg > 2:3289617/1‑93 (MQ=255)
gCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAgcgc < 1:227982/93‑1 (MQ=255)
gCTGAATGAGCCGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGGTAGGGAAAAACGCCTGATAgcgc > 1:1394323/1‑93 (MQ=255)
cTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGcgct < 2:1210218/93‑1 (MQ=255)
tGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGcgctt > 2:1681079/1‑93 (MQ=255)
aTGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGcgcttcgc < 2:1736378/93‑1 (MQ=255)
tGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGcgcttcgct < 1:3312051/93‑1 (MQ=255)
gAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGcgcttcgctt > 1:1840812/1‑93 (MQ=255)
aGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTa < 1:4380063/93‑1 (MQ=255)
aGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTa > 2:3014459/1‑93 (MQ=255)
cTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATc > 2:2220965/1‑93 (MQ=255)
cTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATc < 1:1507779/93‑1 (MQ=255)
cTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATc < 2:3160372/93‑1 (MQ=255)
ggCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAgg < 1:4931513/93‑1 (MQ=255)
ggCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAgg < 1:2570614/93‑1 (MQ=255)
ggCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAgg > 1:1962116/1‑93 (MQ=255)
gCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGc < 1:3987799/93‑1 (MQ=255)
gCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGc < 1:2599166/93‑1 (MQ=255)
cTACGATTTCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATATCGCTTCGCTTCTAAGGcc > 2:6136883/1‑93 (MQ=255)
aCGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTa > 2:3803639/1‑93 (MQ=255)
cGATTGCCACGACGAAACCAATATCCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAACCGCCTGATAGCGCTTCGCTTATCAGGCCTAc < 2:2395978/93‑1 (MQ=255)
gATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTAcc < 1:2053642/93‑1 (MQ=255)
gATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTAcc < 1:356443/93‑1 (MQ=255)
gATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTAcc < 2:5797672/93‑1 (MQ=255)
gATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTAcc < 1:975136/93‑1 (MQ=255)
aTTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTAccc < 2:620155/93‑1 (MQ=255)
ttGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCcg < 2:5604572/93‑1 (MQ=255)
ttGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCcg < 2:2370078/93‑1 (MQ=255)
ttGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCcg > 1:3087225/1‑93 (MQ=255)
ttGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCCTCGCTTATCAAGCCTACCcg > 1:1752387/1‑93 (MQ=255)
tGCCACGACGAAACCAATACCCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCcgc < 2:4714825/93‑1 (MQ=255)
acgacgAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGa > 1:1110949/1‑93 (MQ=255)
gacgaAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACGCGCGCGACa > 2:2543111/1‑93 (MQ=255)
cgaAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAAc < 2:4549218/93‑1 (MQ=255)
ccAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAAAGCCTGATAGCGCTTCGCTTATCAGGCCTAACCGCGCGACAACGTCAt > 2:2715955/1‑93 (MQ=255)
aaTAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCAttt > 2:2907365/1‑93 (MQ=255)
aTAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTtg < 1:2177093/93‑1 (MQ=255)
aTAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCGTATCAGGCCTACCCGCGCGACATCGTCAtgtg > 1:6302342/1‑93 (MQ=255)
aaCCCGGCGTTCAGGTTTTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTtgtg < 2:1357776/93‑1 (MQ=255)
aCCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTgg > 1:1420201/1‑93 (MQ=255)
aCCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTgg < 2:4933669/93‑1 (MQ=255)
cGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTc < 2:6057233/93‑1 (MQ=255)
cGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTc > 2:5945627/1‑93 (MQ=255)
ggCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCg < 1:5158328/93‑1 (MQ=255)
ttCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCaa > 2:720904/1‑93 (MQ=255)
ttCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCaa > 2:4387106/1‑93 (MQ=255)
tCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCaaa > 2:690901/1‑93 (MQ=255)
cAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCaaaa > 2:5477552/1‑93 (MQ=255)
cAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCaaaa < 1:2947470/93‑1 (MQ=255)
aGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAAt < 2:4079743/93‑1 (MQ=255)
aGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAAt < 2:6304/93‑1 (MQ=255)
gTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCt < 2:771637/93‑1 (MQ=255)
ttCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCtt < 2:2743473/93‑1 (MQ=255)
tttttGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCa < 2:4193437/93‑1 (MQ=255)
ttttGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAg > 1:4705489/1‑93 (MQ=255)
ttttGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAg < 2:5283967/93‑1 (MQ=255)
ttttGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAg < 2:2266586/93‑1 (MQ=255)
tttGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGa > 1:4846168/1‑93 (MQ=255)
tttGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGa < 1:2880743/93‑1 (MQ=255)
ttGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGaa < 1:426758/93‑1 (MQ=255)
ttGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGaa < 2:1919070/93‑1 (MQ=255)
ttGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGaa < 2:5386817/93‑1 (MQ=255)
ttGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGaa < 1:5589679/93‑1 (MQ=255)
ttGGCGGGTTAGGGAAAAACGCCTGATAGAGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGGTAGGCAAAATCTTCCAGaa > 2:5515984/1‑93 (MQ=39)
tGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAAt > 1:103109/1‑93 (MQ=255)
ggCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATg < 1:143757/93‑1 (MQ=255)
gCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGc > 1:5794639/1‑93 (MQ=255)
cGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGcc > 1:1563327/1‑93 (MQ=255)
gggTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCt < 2:1821209/93‑1 (MQ=255)
ggTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTc > 2:4871096/1‑93 (MQ=255)
ttAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCaa > 1:2457763/1‑93 (MQ=255)
ttAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCaa > 2:2981008/1‑93 (MQ=255)
tAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAAt < 1:5652946/93‑1 (MQ=255)
tAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAAt > 1:3015072/1‑93 (MQ=255)
aGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAAtt < 2:4631219/93‑1 (MQ=255)
aGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAAtt > 2:4252483/1‑93 (MQ=255)
aGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAAtt < 1:5220960/93‑1 (MQ=255)
gggAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTa < 2:5089420/93‑1 (MQ=255)
gggAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTa < 2:5154577/93‑1 (MQ=255)
gggAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTa > 1:3405112/1‑93 (MQ=255)
ggAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAg < 2:1240787/93‑1 (MQ=255)
gAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGc > 1:1228264/1‑93 (MQ=255)
gAAAAACGACTGATAGCGCTTCGCTTATCAGGCTTACCCGCGCGACCACGCCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGc > 2:882567/1‑93 (MQ=255)
aaaaaCGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCg < 2:1060144/93‑1 (MQ=255)
aaaaaCGCCAGAGAGCGCTTCGCTTATCAGGCCGACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCg < 1:2694836/93‑1 (MQ=255)
aaaaCGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCgg < 1:4365327/93‑1 (MQ=255)
aaaaCGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCgg > 2:2152884/1‑93 (MQ=255)
aaaCGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGc > 2:5264274/1‑93 (MQ=255)
|
TCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGC > NC_000913/3954414‑3954593
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTTCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCAT > NC_000913/3954411‑3954597
|
ATTTCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAAC < SRR4302533.3265577/94‑1 (MQ=60)
ATTTCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAAC < SRR4302533.975481/94‑1 (MQ=60)
ATTTCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAAC < SRR4302533.4651567/94‑1 (MQ=60)
ATTTCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAAC > SRR4302533.4886251/1‑94 (MQ=60)
TTTCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACG < SRR4302533.3490373/94‑1 (MQ=60)
TTTCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACG < SRR4302533.3778778/94‑1 (MQ=60)
CGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCT < SRR4302533.1003992/94‑1 (MQ=60)
CGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCT > SRR4302533.4102715/1‑94 (MQ=60)
CGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCT > SRR4302533.4936586/1‑94 (MQ=60)
CGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCT > SRR4302533.1497841/1‑94 (MQ=60)
CGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCT < SRR4302533.941479/94‑1 (MQ=60)
GACACCCGGCGGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAGCCCGGCTTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTG < SRR4302533.495499/94‑1 (MQ=60)
GAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTG < SRR4302533.3522543/94‑1 (MQ=60)
GAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTG > SRR4302533.3693896/1‑94 (MQ=60)
GAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAAAGCCTG > SRR4302533.3645916/1‑94 (MQ=60)
AAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAAAGCCTGA > SRR4302533.5330159/1‑94 (MQ=60)
AACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCCGGTTAGGGGAAAACGACTGAT > SRR4302533.5464521/1‑94 (MQ=60)
ACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATA > SRR4302533.3766361/1‑94 (MQ=60)
ACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATA > SRR4302533.6158036/1‑94 (MQ=60)
CCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGC < SRR4302533.3875821/94‑1 (MQ=60)
CGGCTGAATGAGCTGGTCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCG < SRR4302533.2611106/94‑1 (MQ=60)
GGCTGAATGAGCCGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGGTAGGGAAAAACGCCTGATAGCGC > SRR4302533.1402725/1‑94 (MQ=60)
GCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCT < SRR4302533.229398/94‑1 (MQ=60)
TGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTC < SRR4302533.267841/94‑1 (MQ=60)
GAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCG < SRR4302533.951488/94‑1 (MQ=60)
TGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTT < SRR4302533.3332504/94‑1 (MQ=60)
TGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTT > SRR4302533.108053/1‑94 (MQ=60)
TGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTT > SRR4302533.1852037/1‑94 (MQ=60)
AGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTAT < SRR4302533.4406508/94‑1 (MQ=60)
CTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCA < SRR4302533.1516868/94‑1 (MQ=60)
GGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGG > SRR4302533.1974093/1‑94 (MQ=60)
GGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGC < SRR4302533.2586431/94‑1 (MQ=60)
GGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGC < SRR4302533.4961375/94‑1 (MQ=60)
GCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCC < SRR4302533.4012091/94‑1 (MQ=60)
GCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCC < SRR4302533.2615141/94‑1 (MQ=60)
CTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCT > SRR4302533.4671828/1‑94 (MQ=60)
TACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTA > SRR4302533.5297792/1‑94 (MQ=60)
CGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACC > SRR4302533.1701111/1‑94 (MQ=60)
GATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCC < SRR4302533.358615/94‑1 (MQ=60)
GATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCC < SRR4302533.980859/94‑1 (MQ=60)
GATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCC < SRR4302533.2066315/94‑1 (MQ=60)
ATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCG > SRR4302533.3106206/1‑94 (MQ=60)
ATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCCTCGCTTATCAAGCCTACCCG > SRR4302533.1763062/1‑94 (MQ=60)
GCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGGAAAACGCCTGATAGCGCTTCGCTTATCTGGCCTACCCGCGC > SRR4302533.5558238/1‑94 (MQ=60)
GCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGC > SRR4302533.3359679/1‑94 (MQ=60)
GCCACCACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGC < SRR4302533.744526/94‑1 (MQ=60)
CACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGA > SRR4302533.1117542/1‑94 (MQ=60)
GACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTCCCCGCGCGACAA > SRR4302533.6054695/1‑94 (MQ=60)
ACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAAC > SRR4302533.5231808/1‑94 (MQ=60)
AACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGCTAGCGCTTCGCTTCTCAGGCCTACCCGCGCCACAACcgct > SRR4302533.1937050/1‑90 (MQ=60)
AACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGGCTACCCGCGCGACAACGTCA > SRR4302533.4391917/1‑94 (MQ=60)
CCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATT > SRR4302533.3733363/1‑94 (MQ=60)
CAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTT > SRR4302533.2938890/1‑94 (MQ=60)
CAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGGTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACCACGTCATTT > SRR4302533.1305528/1‑94 (MQ=60)
AATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTG > SRR4302533.4756100/1‑94 (MQ=60)
AATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCGTATCAGGCCTACCCGCGCGACATCGTCATGTG > SRR4302533.6339992/1‑94 (MQ=60)
ATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGT < SRR4302533.2190513/94‑1 (MQ=60)
ATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGT < SRR4302533.2766714/94‑1 (MQ=60)
AACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGG > SRR4302533.1428793/1‑94 (MQ=60)
AACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGG < SRR4302533.5640760/94‑1 (MQ=60)
CCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACACCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTC > SRR4302533.545183/1‑94 (MQ=60)
GGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGG < SRR4302533.5189466/94‑1 (MQ=60)
GCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGC < SRR4302533.4344846/94‑1 (MQ=60)
GTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAAAGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACCACGTCATTTTTTGTTCCGCAA > SRR4302533.779164/1‑94 (MQ=60)
TTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGCCAACCTCCTTTGTGGTTCGTCAAA > SRR4302533.3332316/1‑94 (MQ=60)
TTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAA < SRR4302533.558415/94‑1 (MQ=60)
TTCAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAA > SRR4302533.1524191/1‑94 (MQ=60)
CAGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAAT < SRR4302533.2965496/94‑1 (MQ=60)
AGGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATC > SRR4302533.2212771/1‑94 (MQ=60)
GGTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCT < SRR4302533.2043252/94‑1 (MQ=60)
GTTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTT > SRR4302533.2412410/1‑94 (MQ=60)
TTCTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTC > SRR4302533.177821/1‑94 (MQ=60)
CTTTTTGGCGGGTTAGGGAAAAACGCCTGGTAGCGCTTCGCTTATCAGGCCTACCCGCCCGACGACGTCATTTGTTGTTCGGTAAAATCGTCCA > SRR4302533.1443407/1‑94 (MQ=60)
CTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCA < SRR4302533.4980129/94‑1 (MQ=60)
CTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCCCGCGACAACGTCATTTGTGGTTCTGCAAAATCTTCCA > SRR4302533.5342815/1‑94 (MQ=60)
CTTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTAACCGCGCGACAAAGTCCTTTGTGGGTCGGCAAAATCTTCCA > SRR4302533.4381644/1‑94 (MQ=60)
TTTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAG > SRR4302533.4734007/1‑94 (MQ=60)
TTTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGA > SRR4302533.4875537/1‑94 (MQ=60)
TTTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAA < SRR4302533.2898465/94‑1 (MQ=60)
TTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAAT > SRR4302533.103754/1‑94 (MQ=60)
TTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAAT < SRR4302533.3085744/94‑1 (MQ=60)
TTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAAT < SRR4302533.5623447/94‑1 (MQ=60)
TTGGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAAT < SRR4302533.429304/94‑1 (MQ=60)
GGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGC < SRR4302533.144680/94‑1 (MQ=60)
GGCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGC > SRR4302533.5829646/1‑94 (MQ=60)
GCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCC < SRR4302533.6206728/94‑1 (MQ=60)
GCGGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCC > SRR4302533.1572738/1‑94 (MQ=60)
GGGTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTC > SRR4302533.2578924/1‑94 (MQ=60)
GTTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAA > SRR4302533.2472929/1‑94 (MQ=60)
TTAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAAT > SRR4302533.3033512/1‑94 (MQ=60)
TAGGGAAAACCGCCTGATAGCGCTTCGCTTATCAGTCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATT < SRR4302533.4114447/94‑1 (MQ=60)
TAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATT < SRR4302533.5687113/94‑1 (MQ=60)
TAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATT > SRR4302533.2976541/1‑94 (MQ=60)
TAGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATT > SRR4302533.4092386/1‑94 (MQ=60)
AGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTA > SRR4302533.5724314/1‑94 (MQ=60)
AGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTA < SRR4302533.5252379/94‑1 (MQ=60)
AGGGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTA > SRR4302533.3426143/1‑94 (MQ=60)
AGGGAAAAACGCCTGATAGCGCTTCGCTTATCAAGCCTACCCGCGCGACAACGTCATTTGTGGGTCTGCAAAATCTTTCAGAATGCCTCAATTA > SRR4302533.113609/1‑94 (MQ=60)
GGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGC < SRR4302533.1872293/94‑1 (MQ=60)
GGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGC > SRR4302533.1235617/1‑94 (MQ=60)
GGAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGC > SRR4302533.4915988/1‑94 (MQ=60)
GAAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCG < SRR4302533.3029579/94‑1 (MQ=60)
AAAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGG < SRR4302533.2165730/94‑1 (MQ=60)
AAAAACGCCAGAGAGCGCTTCGCTTATCAGGCCGACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGG < SRR4302533.2711350/94‑1 (MQ=60)
AAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGC < SRR4302533.4391681/94‑1 (MQ=60)
AAAACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGC < SRR4302533.1410340/94‑1 (MQ=60)
AACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTC > SRR4302533.495098/1‑94 (MQ=60)
ACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCA > SRR4302533.600522/1‑94 (MQ=60)
ACGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCA < SRR4302533.1770377/94‑1 (MQ=60)
CGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCAT > SRR4302533.5729518/1‑94 (MQ=60)
CGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCAT < SRR4302533.4621989/94‑1 (MQ=60)
CGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCAT < SRR4302533.3911240/94‑1 (MQ=60)
CGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCAT > SRR4302533.2109957/1‑94 (MQ=60)
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ATTTCGAAACCCGGCTGAATGAGCTGGGCTACGATTGCCACGACGAAACCAATAACCCGGCGTTCAGGTTCTTTTTGGCGGGTTAGGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCAT > NC_000913/3954411‑3954597
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
