Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,092 |
+CC |
intergenic (+26/+58) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,091 | 1 | . | C | 95.5%
| 288.2
/ 9.1
| 112 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/5); new base C (6/101); total (6/106) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 |
| * | NC_000913 | 3,957,091 | 2 | . | C | 95.6%
| 290.0
/ 9.0
| 113 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/5); new base C (6/102); total (6/107) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.52e-01 |
Only 100 of 123 total aligned reads displayed.
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957002‑3957173
||
gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCC‑‑CCCCC‑‑A‑‑cccc > 2:1964581/1‑90 (MQ=255)
gtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑A‑‑C‑‑cctctcc < 2:2528387/93‑4 (MQ=255)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCcaca < 1:1028594/93‑1 (MQ=38)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCcaca < 2:5555980/93‑1 (MQ=38)
taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACag < 1:5296332/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagg < 2:1667688/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagg < 1:4814810/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagg < 2:559559/93‑1 (MQ=37)
aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACaggg < 2:1651523/93‑1 (MQ=37)
gAACCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCC‑‑CCCCGGCC‑‑C‑‑TCTCCCGCaggga < 2:4288244/93‑1 (MQ=25)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACaggga < 2:3196311/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggaga < 2:711556/93‑1 (MQ=37)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggagag < 1:651080/93‑1 (MQ=37)
aCTACGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggagag < 1:2707590/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggagaggg < 1:6298810/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggagaggg < 2:4103744/93‑1 (MQ=25)
gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggagaggga < 1:2328671/93‑1 (MQ=25)
cgGCTATATGACAGATATGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGaa < 1:1634713/93‑1 (MQ=21)
cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGaa < 2:2792994/93‑1 (MQ=25)
gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGaaaa < 1:6002934/93‑1 (MQ=21)
cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAac < 1:4512987/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCC‑‑CCCCC‑‑ACCC‑‑CCTCCCCCCAGGAGAGGGGGaaaaaa > 1:5894655/1‑91 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAaca < 1:2881568/93‑1 (MQ=21)
atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAacac < 2:692652/93‑1 (MQ=21)
atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑c < 1:2920941/93‑1 (MQ=21)
gACAGATATGACACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑aa < 2:4598999/93‑1 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGCCTCACCCCCCC‑‑T‑‑C‑‑TCTCCCCCATGGAGGGGGAGAGAACACT‑a‑aa > 2:5140659/1‑93 (MQ=255)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑aa < 2:4549254/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑g < 2:700721/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑g < 2:1503394/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑g < 2:2502993/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑g < 2:141965/93‑1 (MQ=21)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑ggc < 1:3237166/93‑3 (MQ=21)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑ggc < 2:5546462/93‑3 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCT‑‑ACCC‑‑TCTTCCACATGGGGGGGGAGAAAACACT‑C‑aacgcc > 1:3186964/1‑89 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑ggcc < 2:4692227/93‑4 (MQ=21)
aatatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑ggcc < 1:3879865/92‑4 (MQ=18)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑ggcct < 2:3063748/93‑5 (MQ=21)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTtc < 2:5065353/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTtc < 2:5698581/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCC‑‑ACCC‑‑TCTCCCCCAGGGAGAGGGAGAAAACACT‑CAAA‑GCCTtctc > 2:2023207/1‑93 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTcc < 1:2458931/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCt < 2:4530529/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTg < 1:5029976/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTg < 1:4757539/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGga < 1:569997/93‑1 (MQ=21)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGgaga < 2:4218555/93‑1 (MQ=18)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGgaga < 1:1870230/93‑1 (MQ=18)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGgaga < 1:4922320/93‑1 (MQ=18)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCA‑‑CCCCGCCC‑‑C‑‑CCTCCCCCCGGGGGGGGGGGGAAAAACTAC‑AA‑GCCTTCTCCTggggg > 2:4141417/1‑90 (MQ=12)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 1:4267159/93‑1 (MQ=18)
ttGCTGTAGGGGGTTAAGTGCGCGCTGATCCCCTCC‑‑CCCCG‑‑ACCC‑‑CCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 2:5302792/93‑1 (MQ=18)
tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAg < 1:650441/93‑1 (MQ=18)
gCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCCCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAgg < 2:3574081/93‑1 (MQ=18)
cTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGc < 2:3527743/93‑1 (MQ=18)
cTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGc < 2:3143398/93‑1 (MQ=18)
tttGCGGGTTAAGTGCTCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGAGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:6271825/92‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCtt < 2:6101429/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:2729665/93‑1 (MQ=18)
gtGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:605021/92‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGGGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGc > 1:3193077/1‑93 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:1570314/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:3180618/93‑1 (MQ=18)
ttAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 2:293587/93‑1 (MQ=18)
ttAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:4844363/93‑1 (MQ=18)
ttAAGTGCGCGCTGATGACCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:2441000/93‑1 (MQ=18)
tAAGTGCGCGCTGATGCCCTCG‑‑CCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:4723319/93‑1 (MQ=18)
tAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:4031086/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:970136/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:3317814/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:4489672/93‑1 (MQ=18)
tGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:2513177/93‑1 (MQ=21)
tGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:6160169/93‑1 (MQ=21)
ggctcgcTGATGCCTTCG‑‑CCCGG‑‑A‑‑CCGTCTCCCGCAGGGAGAGGGAGAAAACTCT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:1459393/89‑1 (MQ=19)
gcgcgcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 2:5962141/93‑1 (MQ=21)
gcgcgcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 2:2213932/93‑1 (MQ=21)
cgcgcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:6154697/93‑1 (MQ=21)
gcgcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 2:4504717/93‑1 (MQ=21)
gcgcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 1:489710/93‑1 (MQ=21)
gcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:23900/93‑1 (MQ=21)
cggATGCCCTCC‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACGCT‑C‑AAGGCCTCCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:3487822/91‑1 (MQ=21)
cTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:316080/93‑1 (MQ=21)
tGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 2:1126514/93‑1 (MQ=25)
tGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 1:462216/93‑1 (MQ=25)
gATGCCCTCC‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:93596/93‑1 (MQ=25)
gATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:931863/93‑1 (MQ=25)
gATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 2:508328/93‑1 (MQ=25)
cccTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:6237745/93‑1 (MQ=25)
cccTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 2:3325020/93‑1 (MQ=25)
cccGCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:4880619/93‑1 (MQ=25)
ccTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:6017890/93‑1 (MQ=25)
tCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 2:903249/93‑1 (MQ=37)
tCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:5958298/1‑93 (MQ=37)
tCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:4866222/1‑93 (MQ=37)
cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:3932169/93‑1 (MQ=37)
cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:2849179/93‑1 (MQ=37)
cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:4788886/93‑1 (MQ=37)
cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:6144739/93‑1 (MQ=37)
cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:1871355/93‑1 (MQ=37)
cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat > 2:4190781/1‑93 (MQ=37)
||
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957002‑3957173
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957002‑3957184
|
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CCCT < SRR4302533.3471989/94‑1 (MQ=60)
AGGTAAGAAACTGCGCGGCTAAATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGCCTCACCCCG‑‑ACCCTCTCCCAC > SRR4302533.4015716/1‑94 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAG < SRR4302533.1034634/94‑1 (MQ=60)
TAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGG < SRR4302533.305370/94‑1 (MQ=60)
TAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGG < SRR4302533.5328052/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGG < SRR4302533.4843993/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302533.4847310/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302533.654929/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302533.863888/94‑1 (MQ=60)
ACTACGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302533.2724200/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302533.5944780/94‑1 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGA < SRR4302533.6336412/94‑1 (MQ=60)
GCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG < SRR4302533.2343090/94‑1 (MQ=60)
CGGCTATATGACAGATATGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAA < SRR4302533.1644615/94‑1 (MQ=60)
GCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC < SRR4302533.6245459/94‑1 (MQ=60)
GCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC < SRR4302533.6039308/94‑1 (MQ=60)
GCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC < SRR4302533.2603516/94‑1 (MQ=60)
CTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACA < SRR4302533.4540319/94‑1 (MQ=60)
TATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACAC < SRR4302533.2899295/94‑1 (MQ=60)
ATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCA < SRR4302533.2938834/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GG < SRR4302533.2162167/94‑1 (MQ=60)
AGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCT‑‑ACCCTCTTCCACATGGGGGGGGAGAAAACACTCAACGCC > SRR4302533.3206570/1‑94 (MQ=60)
AGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑Ggcc < SRR4302533.3257113/94‑4 (MQ=60)
AATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCT < SRR4302533.3903539/94‑1 (MQ=57)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTC < SRR4302533.446095/94‑1 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTC < SRR4302533.4428940/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302533.2474103/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGG < SRR4302533.4786405/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGG < SRR4302533.5060430/94‑1 (MQ=60)
CGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGA < SRR4302533.4519621/94‑1 (MQ=60)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAG < SRR4302533.573364/94‑1 (MQ=60)
ATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAA < SRR4302533.1881633/94‑1 (MQ=60)
ATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAA < SRR4302533.4952138/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAG < SRR4302533.4292854/94‑1 (MQ=60)
TGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGG < SRR4302533.654281/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302533.2746408/94‑1 (MQ=60)
GTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302533.608574/94‑1 (MQ=60)
TGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGGGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGC > SRR4302533.3212719/1‑94 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302533.1579772/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302533.4873726/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGACCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302533.2456070/94‑1 (MQ=60)
TAAGTGCGCGCTGATGCCCTCGCCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302533.4751955/94‑1 (MQ=47)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302533.4055625/94‑1 (MQ=60)
AAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302533.975826/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302533.3338306/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302533.6197216/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302533.2528663/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302533.6191728/94‑1 (MQ=60)
GCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTA < SRR4302533.492639/94‑1 (MQ=60)
TGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGC < SRR4302533.464974/94‑1 (MQ=60)
GATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCA < SRR4302533.94186/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCA < SRR4302533.937333/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302533.6275096/94‑1 (MQ=60)
CCCGCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302533.4910186/94‑1 (MQ=60)
CTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAA > SRR4302533.5019177/1‑94 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302533.3956174/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302533.1882763/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302533.6181737/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302533.2866709/94‑1 (MQ=60)
ACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302533.1646968/1‑94 (MQ=60)
ACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302533.5046410/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT > SRR4302533.2014768/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT > SRR4302533.6105161/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT > SRR4302533.2014767/1‑94 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302533.3302120/1‑94 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG > SRR4302533.3203709/6‑94 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG > SRR4302533.5293809/6‑94 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG > SRR4302533.3514102/6‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302533.5190505/5‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302533.1794468/5‑94 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT > SRR4302533.1710595/4‑94 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCATTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT < SRR4302533.3651635/91‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302533.1079270/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302533.2495791/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302533.5218813/94‑1 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302533.4597081/1‑94 (MQ=60)
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AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957002‑3957184
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
