Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,486,295	T→C	D446G (GAC→GGC)	yjgR ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,486,295	0	T	C	100.0%	789.4 / NA	246	D446G (GAC→GGC)	yjgR	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (115/131); total (115/131)

Only 100 of 252 total aligned reads displayed.

TTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGTCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCG  >  NC_000913/4486205‑4486384

ttGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCa                                                                                         >  2:145419/1‑93 (MQ=255)

ttGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCa                                                                                         <  2:578438/93‑1 (MQ=255)

 tGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCAt                                                                                        >  1:887052/1‑93 (MQ=255)

  ggCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATc                                                                                       >  2:352951/1‑93 (MQ=255)

   gCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATcc                                                                                      >  1:4379465/1‑93 (MQ=255)

   gCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATcc                                                                                      <  2:3420267/93‑1 (MQ=255)

   gCCATTGTTGTCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATcc                                                                                      <  1:5176215/93‑1 (MQ=255)

    ccATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCa                                                                                     >  1:945680/1‑93 (MQ=255)

    ccATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCa                                                                                     >  1:2800035/1‑93 (MQ=255)

     cATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCAc                                                                                    >  2:6299372/1‑93 (MQ=255)

     cATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCAc                                                                                    <  1:4588777/93‑1 (MQ=255)

      aTTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCAcc                                                                                   <  2:1372735/93‑1 (MQ=255)

      aTTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCAcc                                                                                   >  2:5351148/1‑93 (MQ=255)

       ttGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCg                                                                                  >  1:5904854/1‑93 (MQ=255)

         gTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCt                                                                                <  1:331099/93‑1 (MQ=255)

          tttGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTa                                                                               >  1:3994411/1‑93 (MQ=255)

             gCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACct                                                                            <  2:5926740/93‑1 (MQ=255)

                ccacaccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCtt                                                                         <  1:5588872/93‑1 (MQ=255)

                ccacaccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCtt                                                                         >  1:1676504/1‑93 (MQ=255)

                 cacaccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCttt                                                                        <  2:4617812/93‑1 (MQ=255)

                 cacaccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCttt                                                                        <  2:4068699/93‑1 (MQ=255)

                 cacaccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCttt                                                                        >  1:4877348/1‑93 (MQ=255)

                  acaccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTc                                                                       >  2:5630068/1‑93 (MQ=255)

                  acaccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTc                                                                       >  1:87142/1‑93 (MQ=255)

                  acaccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTc                                                                       >  2:2258168/1‑93 (MQ=255)

                  acaccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTc                                                                       >  2:3057279/1‑93 (MQ=255)

                     ccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCt                                                                    >  2:5460139/1‑93 (MQ=255)

                     ccaTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCt                                                                    >  2:3170722/1‑93 (MQ=255)

                      caTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCtt                                                                   >  1:3322328/1‑93 (MQ=255)

                       aTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCttt                                                                  <  1:751220/93‑1 (MQ=255)

                       aTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCttt                                                                  <  2:2104921/93‑1 (MQ=255)

                       aTCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCttt                                                                  <  2:5821514/93‑1 (MQ=255)

                        tctttcttCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTc                                                                 >  2:2444158/1‑93 (MQ=255)

                        tctttcttCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTc                                                                 <  2:2008717/93‑1 (MQ=255)

                        tctttcttCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTc                                                                 <  2:2060091/93‑1 (MQ=255)

                        tctttcttCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTc                                                                 <  1:2905850/93‑1 (MQ=255)

                            tcttcCCGCCGCGTGGTCCGTTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCgg                                                             <  2:4696610/93‑1 (MQ=255)

                            tcttcCCGCCGCGTGGTCCGGTAGAGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTAGCTCTTTCCCTCTCGCgg                                                             >  2:4939828/1‑93 (MQ=255)

                             cttcCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCggg                                                            <  1:4330150/93‑1 (MQ=255)

                             cttcCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCggg                                                            <  2:4283268/93‑1 (MQ=255)

                               tcCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGggag                                                          <  1:3580875/93‑1 (MQ=255)

                               tcCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGggag                                                          >  2:182061/1‑93 (MQ=255)

                                 ccgccgCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGggagga                                                        <  2:3258783/93‑1 (MQ=255)

                                 ccgccgCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGggagga                                                        <  2:4095985/93‑1 (MQ=255)

                                  cgccgcGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGat                                                       <  1:2850138/93‑1 (MQ=255)

                                   gccgcGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGatt                                                      >  2:1722252/1‑93 (MQ=255)

                                      gcgTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGattatt                                                   <  1:422585/93‑1 (MQ=255)

                                        gTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTAtttt                                                 <  1:3737673/93‑1 (MQ=255)

                                         tGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTtg                                                >  2:3723374/1‑93 (MQ=255)

                                           gTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTtgct                                              >  1:3700770/1‑93 (MQ=255)

                                             ccGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTtgctgc                                            <  1:6105315/93‑1 (MQ=255)

                                             ccGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTtgctgc                                            <  2:539787/93‑1 (MQ=255)

                                              cGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTgctgct                                           >  2:2890172/1‑93 (MQ=255)

                                                gTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCg                                         >  2:5949106/1‑93 (MQ=255)

                                                gTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCg                                         <  2:829192/93‑1 (MQ=255)

                                                gTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCg                                         <  1:6299372/93‑1 (MQ=255)

                                                gTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCg                                         <  1:2348183/93‑1 (MQ=255)

                                                gTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCg                                         <  1:3161964/93‑1 (MQ=255)

                                                 tAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCgg                                        >  1:1638673/1‑93 (MQ=255)

                                                 tAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCgg                                        <  1:2549601/93‑1 (MQ=255)

                                                   gTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTa                                      <  2:2374110/93‑1 (MQ=255)

                                                   gTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTa                                      >  2:5656718/1‑93 (MQ=255)

                                                    tGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTAc                                     >  2:616336/1‑93 (MQ=255)

                                                    tGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTAc                                     <  1:4131625/93‑1 (MQ=255)

                                                       cGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTgg                                  <  2:4816921/93‑1 (MQ=255)

                                                         aaCAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGcc                                >  1:1185290/1‑93 (MQ=255)

                                                          aCAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCt                               >  1:4851449/1‑93 (MQ=255)

                                                           cAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTg                              >  2:333612/1‑93 (MQ=255)

                                                              aaTATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGaaa                           >  1:4781984/1‑93 (MQ=255)

                                                              aaTATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGaaa                           <  1:2002834/93‑1 (MQ=255)

                                                              aaTATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGaaa                           >  1:501586/1‑93 (MQ=255)

                                                                 atCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGcc                        >  2:5168511/1‑93 (MQ=255)

                                                                  tCCTTCACTCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCt                       <  1:3923486/93‑1 (MQ=255)

                                                                  tCCTTCAATCCACTAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCt                       <  2:3623541/93‑1 (MQ=255)

                                                                  tCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCt                       >  1:4993510/1‑93 (MQ=255)

                                                                   ccTGCAACCCACCAAGAGTGCCGCCAACCACCGTTACCTCTTTCCATTTCGGGAGAGGATTATTTTGCTGCTCGGTACTGGACTGAAAGGCtt                      <  2:4442482/93‑1 (MQ=255)

                                                                      tCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCttttt                   >  1:1483486/1‑93 (MQ=255)

                                                                      tCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGATACTGGCCTGAAAGCCttttt                   <  1:5193437/93‑1 (MQ=255)

                                                                       cAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTg                  >  1:2832743/1‑93 (MQ=255)

                                                                            caccaAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACa             <  2:1257032/93‑1 (MQ=255)

                                                                              ccaAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACAtc           >  1:6049598/1‑93 (MQ=255)

                                                                              ccaAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACAtc           <  2:2729859/93‑1 (MQ=255)

                                                                               caAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACAtct          <  2:4508407/93‑1 (MQ=255)

                                                                               caAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACAtct          <  1:4236441/93‑1 (MQ=255)

                                                                               caAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACAtct          >  1:1935585/1‑93 (MQ=255)

                                                                                 aGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCa        >  1:238291/1‑93 (MQ=255)

                                                                                 aGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGATGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCa        >  1:2485124/1‑93 (MQ=255)

                                                                                  gAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCAt       <  2:5038078/93‑1 (MQ=255)

                                                                                  gAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCAt       <  2:6130278/93‑1 (MQ=255)

                                                                                  gAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCAt       <  2:2707161/93‑1 (MQ=255)

                                                                                   aaTGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATa      <  1:1427490/93‑1 (MQ=255)

                                                                                   aaTGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATa      <  1:1053364/93‑1 (MQ=255)

                                                                                   aaTGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATa      <  1:1706129/93‑1 (MQ=255)

                                                                                   aaTGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATa      <  1:2659528/93‑1 (MQ=255)

                                                                                   aaTGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATa      <  1:5351148/93‑1 (MQ=255)

                                                                                      gccgccATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGCCCTGAAAGCCTTTTTGCAACATCTCATAGGc   <  1:2101520/93‑1 (MQ=255)

                                                                                       ccGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCg  >  1:3462929/1‑93 (MQ=255)

                                                                                       ccGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCg  >  1:59982/1‑93 (MQ=255)

                                                                                       ccGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCg  >  2:769576/1‑93 (MQ=255)

                                                                                       ccGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCg  >  1:6261759/1‑93 (MQ=255)

TTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGTCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCG  >  NC_000913/4486205‑4486384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGTCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCGGAT  >  NC_000913/4486205‑4486387

TTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCAT                                                                                           >  SRR4302533.892259/1‑94 (MQ=60)

 TGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATC                                                                                          >  SRR4302533.1699474/1‑94 (MQ=60)

  GGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCC                                                                                         >  SRR4302533.4405906/1‑94 (MQ=60)

   GCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCA                                                                                        >  SRR4302533.951241/1‑94 (MQ=60)

   GCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCA                                                                                        >  SRR4302533.2817256/1‑94 (MQ=60)

   GCCATTGTTGTCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCA                                                                                        <  SRR4302533.5207479/94‑1 (MQ=60)

     CATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACC                                                                                      <  SRR4302533.4616572/94‑1 (MQ=60)

     CATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACC                                                                                      <  SRR4302533.5796000/94‑1 (MQ=60)

      ATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCG                                                                                     >  SRR4302533.4225718/1‑94 (MQ=60)

      ATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCG                                                                                     >  SRR4302533.5940516/1‑94 (MQ=60)

       TTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGC                                                                                    <  SRR4302533.2482938/94‑1 (MQ=60)

        TGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCT                                                                                   >  SRR4302533.5104327/1‑94 (MQ=60)

         GTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTA                                                                                  <  SRR4302533.333125/94‑1 (MQ=60)

         GTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTA                                                                                  >  SRR4302533.4018731/1‑94 (MQ=60)

              CACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCT                                                                             <  SRR4302533.5239357/94‑1 (MQ=60)

              CACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCT                                                                             <  SRR4302533.496023/94‑1 (MQ=60)

               ACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTT                                                                            >  SRR4302533.1686655/1‑94 (MQ=60)

               ACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTT                                                                            >  SRR4302533.3648652/1‑94 (MQ=60)

                CCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTT                                                                           >  SRR4302533.3559741/1‑94 (MQ=60)

                CCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTT                                                                           <  SRR4302533.3310291/94‑1 (MQ=60)

                CCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTT                                                                           <  SRR4302533.5622638/94‑1 (MQ=60)

                CCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTT                                                                           >  SRR4302533.4906897/1‑94 (MQ=60)

                 CACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTC                                                                          >  SRR4302533.87701/1‑94 (MQ=60)

                  ACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCC                                                                         >  SRR4302533.3998286/1‑94 (MQ=60)

                    ACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCT                                                                       <  SRR4302533.2829811/94‑1 (MQ=60)

                    ACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCT                                                                       >  SRR4302533.4014694/1‑94 (MQ=60)

                     CCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTTCCTCTTTCCCTT                                                                      <  SRR4302533.2880812/94‑1 (MQ=60)

                     CCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTT                                                                      <  SRR4302533.4228944/94‑1 (MQ=60)

                     CCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTT                                                                      >  SRR4302533.3342846/1‑94 (MQ=60)

                      CATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTT                                                                     <  SRR4302533.634733/94‑1 (MQ=60)

                      CATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTT                                                                     >  SRR4302533.869597/1‑94 (MQ=60)

                       ATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTC                                                                    <  SRR4302533.385369/94‑1 (MQ=60)

                       ATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTC                                                                    <  SRR4302533.755646/94‑1 (MQ=60)

                       ATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTC                                                                    <  SRR4302533.5552041/94‑1 (MQ=60)

                        TCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCG                                                                   <  SRR4302533.2923693/94‑1 (MQ=60)

                        TCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCG                                                                   <  SRR4302533.6316339/94‑1 (MQ=60)

                        TCTTTCTCCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCG                                                                   <  SRR4302533.4588731/94‑1 (MQ=60)

                           TTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGG                                                                <  SRR4302533.5941932/94‑1 (MQ=60)

                             CTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGA                                                              <  SRR4302533.4356236/94‑1 (MQ=60)

                             CTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGA                                                              <  SRR4302533.446247/94‑1 (MQ=60)

                             CTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGA                                                              >  SRR4302533.2893166/1‑94 (MQ=60)

                               TCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGG                                                            <  SRR4302533.3602937/94‑1 (MQ=60)

                                CCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGA                                                           >  SRR4302533.4120445/1‑94 (MQ=60)

                                  CGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATT                                                         <  SRR4302533.2867673/94‑1 (MQ=60)

                                   GCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTA                                                        <  SRR4302533.2658035/94‑1 (MQ=60)

                                     CGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATT                                                      <  SRR4302533.169237/94‑1 (MQ=60)

                                     CGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATT                                                      >  SRR4302533.730842/1‑94 (MQ=60)

                                      GCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTT                                                     <  SRR4302533.425113/94‑1 (MQ=60)

                                       CGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTT                                                    <  SRR4302533.2472085/94‑1 (MQ=60)

                                        GTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTG                                                   <  SRR4302533.1466779/94‑1 (MQ=60)

                                        GTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTG                                                   <  SRR4302533.3746238/94‑1 (MQ=60)

                                        GTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTG                                                   <  SRR4302533.3760597/94‑1 (MQ=60)

                                        GTGGTCCGGTAGTGCCGAACAAAATATCCTACAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTG                                                   <  SRR4302533.3423567/94‑1 (MQ=60)

                                          GGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCT                                                 >  SRR4302533.3723498/1‑94 (MQ=60)

                                          GGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCT                                                 >  SRR4302533.6079228/1‑94 (MQ=60)

                                          GGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCT                                                 <  SRR4302533.878040/94‑1 (MQ=60)

                                          GGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCT                                                 <  SRR4302533.4800570/94‑1 (MQ=60)

                                          GGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACAAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCT                                                 >  SRR4302533.4255515/1‑94 (MQ=60)

                                            TCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGC                                               >  SRR4302533.2862219/1‑94 (MQ=60)

                                             CCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCT                                              <  SRR4302533.6142184/94‑1 (MQ=60)

                                               GGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCG                                            <  SRR4302533.2533759/94‑1 (MQ=60)

                                               GGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCG                                            <  SRR4302533.4867951/94‑1 (MQ=60)

                                                GTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCTG                                           >  SRR4302533.1060097/1‑94 (MQ=60)

                                                GTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGG                                           >  SRR4302533.1648595/1‑94 (MQ=60)

                                                GTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGG                                           <  SRR4302533.2362712/94‑1 (MQ=60)

                                                GTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGG                                           <  SRR4302533.6336982/94‑1 (MQ=60)

                                                GTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGG                                           <  SRR4302533.3181424/94‑1 (MQ=60)

                                                 TAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGT                                          <  SRR4302533.987256/94‑1 (MQ=60)

                                                 TAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGT                                          <  SRR4302533.2565295/94‑1 (MQ=60)

                                                  AGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTA                                         >  SRR4302533.5117104/1‑94 (MQ=60)

                                                  AGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTA                                         >  SRR4302533.430972/1‑94 (MQ=60)

                                                    TGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACT                                       <  SRR4302533.4156703/94‑1 (MQ=60)

                                                    TGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACT                                       >  SRR4302533.3450379/1‑94 (MQ=60)

                                                    TGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACT                                       <  SRR4302533.4373408/94‑1 (MQ=60)

                                                     GCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTG                                      <  SRR4302533.1251654/94‑1 (MQ=60)

                                                      CCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGG                                     <  SRR4302533.905837/94‑1 (MQ=60)

                                                      CCGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGG                                     <  SRR4302533.897804/94‑1 (MQ=60)

                                                       CGAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGC                                    >  SRR4302533.2199782/1‑94 (MQ=60)

                                                        GAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCC                                   >  SRR4302533.1858170/1‑94 (MQ=60)

                                                        GAACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCC                                   >  SRR4302533.1192404/1‑94 (MQ=60)

                                                         AACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCT                                  >  SRR4302533.4880848/1‑94 (MQ=60)

                                                         AACAAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCT                                  >  SRR4302533.4880847/1‑94 (MQ=60)

                                                            AAAATATCCTTCAATCCCCCAAGGATTCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAA                               <  SRR4302533.4920821/94‑1 (MQ=60)

                                                            AAAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAA                               <  SRR4302533.3749513/94‑1 (MQ=60)

                                                             AAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAA                              >  SRR4302533.4810958/1‑94 (MQ=60)

                                                             AAATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAA                              >  SRR4302533.504568/1‑94 (MQ=60)

                                                              AATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAG                             <  SRR4302533.2015171/94‑1 (MQ=60)

                                                              AATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAG                             >  SRR4302533.6067470/1‑94 (MQ=60)

                                                              AATATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAG                             >  SRR4302533.3090017/1‑94 (MQ=60)

                                                                TATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCC                           <  SRR4302533.6102267/94‑1 (MQ=60)

                                                                 ATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCT                          >  SRR4302533.2806443/1‑94 (MQ=60)

                                                                 ATCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCT                          >  SRR4302533.5023784/1‑94 (MQ=60)

                                                                  TCCTTCACTCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTT                         <  SRR4302533.3947441/94‑1 (MQ=60)

                                                                  TCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTT                         >  SRR4302533.5211430/1‑94 (MQ=60)

                                                                  TCCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTT                         >  SRR4302533.6199268/1‑94 (MQ=60)

                                                                   CCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTT                        <  SRR4302533.5720600/94‑1 (MQ=60)

                                                                   CCTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTT                        >  SRR4302533.2616891/1‑94 (MQ=60)

                                                                    CTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTT                       >  SRR4302533.2167073/1‑94 (MQ=60)

                                                                    CTTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTT                       <  SRR4302533.3336568/94‑1 (MQ=60)

                                                                     TTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTT                      <  SRR4302533.1513483/94‑1 (MQ=60)

                                                                     TTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTT                      >  SRR4302533.1492441/1‑94 (MQ=60)

                                                                     TTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTT                      >  SRR4302533.5326252/1‑94 (MQ=60)

                                                                     TTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTT                      >  SRR4302533.761358/1‑94 (MQ=60)

                                                                     TTCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTT                      <  SRR4302533.364182/94‑1 (MQ=60)

                                                                      TCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTG                     <  SRR4302533.4318798/94‑1 (MQ=60)

                                                                      TCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTG                     >  SRR4302533.2850182/1‑94 (MQ=60)

                                                                      TCAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGATACTGGCCTGAAAGCCTTTTTG                     <  SRR4302533.5224763/94‑1 (MQ=60)

                                                                       CAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGC                    >  SRR4302533.2829892/1‑94 (MQ=60)

                                                                       CAATCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGCCCTGAAAGCCTTTTTGC                    >  SRR4302533.1339745/1‑94 (MQ=60)

                                                                          TCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAAC                 <  SRR4302533.1976943/94‑1 (MQ=60)

                                                                          TCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAAC                 <  SRR4302533.1566794/94‑1 (MQ=60)

                                                                          TCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAAC                 <  SRR4302533.1685450/94‑1 (MQ=60)

                                                                          TCCACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAAA                 >  SRR4302533.6245417/1‑94 (MQ=60)

                                                                             ACCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATC              >  SRR4302533.6086248/1‑94 (MQ=60)

                                                                              CCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCT             <  SRR4302533.2038358/94‑1 (MQ=60)

                                                                              CCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCT             >  SRR4302533.1947392/1‑94 (MQ=60)

                                                                              CCAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCT             >  SRR4302533.4887610/1‑94 (MQ=60)

                                                                               CAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTC            >  SRR4302533.1954193/1‑94 (MQ=60)

                                                                               CAAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTC            <  SRR4302533.4262033/94‑1 (MQ=60)

                                                                                AAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCA           >  SRR4302533.239766/1‑94 (MQ=60)

                                                                                AAGAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGATGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCA           >  SRR4302533.2500437/1‑94 (MQ=60)

                                                                                  GAATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATA         <  SRR4302533.2395475/94‑1 (MQ=60)

                                                                                   AATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAG        <  SRR4302533.5383258/94‑1 (MQ=60)

                                                                                   AATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAG        <  SRR4302533.2675861/94‑1 (MQ=60)

                                                                                   AATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAG        <  SRR4302533.1059567/94‑1 (MQ=60)

                                                                                   AATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAG        <  SRR4302533.1436117/94‑1 (MQ=60)

                                                                                   AATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAG        <  SRR4302533.1716463/94‑1 (MQ=60)

                                                                                    ATGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGG       <  SRR4302533.3269779/94‑1 (MQ=60)

                                                                                     TGCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGC      <  SRR4302533.5029535/94‑1 (MQ=60)

                                                                                      GCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCG     >  SRR4302533.60373/1‑94 (MQ=60)

                                                                                      GCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCG     >  SRR4302533.3484306/1‑94 (MQ=60)

                                                                                      GCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCG     >  SRR4302533.6299194/1‑94 (MQ=60)

                                                                                      GCCGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGCCCTGAAAGCCTTTTTGCAACATCTCATAGGCG     <  SRR4302533.2114480/94‑1 (MQ=60)

                                                                                        CGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCGGA   >  SRR4302533.1858773/1‑94 (MQ=60)

                                                                                        CGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCGGA   <  SRR4302533.1302232/94‑1 (MQ=60)

                                                                                        CGCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCGGA   >  SRR4302533.471825/1‑94 (MQ=60)

                                                                                         GCCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCGGAT  <  SRR4302533.4945354/94‑1 (MQ=60)

TTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTTCAATCCACCAAGAATGCCGTCATCCACCGCTACCTCTTTCCCTTTCGCGGGAGGATTATTTTGCTGCTCGGTACTGGCCTGAAAGCCTTTTTGCAACATCTCATAGGCGGAT  >  NC_000913/4486205‑4486387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`