Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,498,550 |
(C)5→6 |
intergenic (‑101/‑278) |
yjgY ← / → yjgZ |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,498,545 | 1 | . | C | 98.0%
| 799.3
/ 7.1
| 254 | intergenic (‑96/‑283) | yjgY/yjgZ | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/4); new base C (123/126); total (124/130) |
| Fisher's exact test for biased strand distribution p-value = 3.71e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 284 total aligned reads displayed.
ACACTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑A‑CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATG > NC_000913/4498453‑4498632
|
cTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑A‑cc‑c < 1:662966/93‑1 (MQ=255)
cTGGTACTGCAAGAGGGGGACTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑A‑cc‑c > 2:6153853/1‑93 (MQ=255)
tGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑A‑cc‑cc > 1:3077532/1‑93 (MQ=255)
aCTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑A‑cc‑cc‑cctc < 1:1069049/93‑4 (MQ=255)
cAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGa < 1:2890783/93‑1 (MQ=255)
agagGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAgg < 1:5682639/93‑1 (MQ=255)
gagGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGc > 2:4069384/1‑93 (MQ=255)
gggggCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCgt > 2:6202348/1‑93 (MQ=255)
gggggCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCgt > 2:5503880/1‑93 (MQ=255)
gggggCCTTCGCTCCTCTGACATTACTAAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCgt < 1:2623706/93‑1 (MQ=255)
ggggCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTCC‑C‑CC‑CC‑CTCGCGAGGCgtt < 2:3469995/93‑1 (MQ=255)
ggCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCgttgt < 2:3936162/93‑1 (MQ=255)
ccTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGttgttg > 1:6147734/1‑93 (MQ=255)
cTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCTATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGc < 2:1384350/93‑1 (MQ=255)
cTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGc > 2:2439284/1‑93 (MQ=255)
cTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGc < 2:3575050/93‑1 (MQ=255)
cTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGc < 1:2321843/93‑1 (MQ=255)
ttCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGAGTTGTTGcc > 2:3108773/1‑93 (MQ=255)
ctcctcTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTc > 1:4829340/1‑93 (MQ=255)
tcctcTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCa > 2:2602935/1‑93 (MQ=255)
cctcTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCAc < 2:5695792/93‑1 (MQ=255)
cctcTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCAc > 1:1611576/1‑93 (MQ=255)
tctGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCAccc > 2:4591408/1‑93 (MQ=255)
ctGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCg > 2:4137331/1‑93 (MQ=255)
ctGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACACg > 1:699016/1‑93 (MQ=255)
tGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCgg > 2:2055986/1‑93 (MQ=255)
ttACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGgacaga > 1:5519069/1‑93 (MQ=255)
tACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGgacagac > 1:3170840/1‑93 (MQ=255)
tACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGgacagac < 2:1520072/93‑1 (MQ=255)
cTCAGTATTTTCACTACTACCCCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGacac < 1:245266/93‑1 (MQ=255)
cTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGacac < 1:1374322/93‑1 (MQ=255)
tCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACAcc > 2:2885363/1‑93 (MQ=255)
aGTATTTTCACTACTACCCCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGt < 1:1782035/93‑1 (MQ=255)
aGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGt < 1:4724476/93‑1 (MQ=255)
gTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGtt < 2:5896378/93‑1 (MQ=255)
tATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTa < 2:3338676/93‑1 (MQ=255)
tATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTa < 1:4264938/93‑1 (MQ=255)
tATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTa < 1:2258013/93‑1 (MQ=255)
aTTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CGC‑CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTAt < 1:1734797/93‑1 (MQ=255)
aTTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTAt < 2:1457934/93‑1 (MQ=255)
aTTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTAt < 2:657817/93‑1 (MQ=255)
actactACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACtt > 2:3765035/1‑93 (MQ=255)
actactACACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACtt > 1:541313/1‑93 (MQ=255)
tactacACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTtct > 2:5788735/1‑93 (MQ=255)
cctacACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTtctc < 1:4418950/92‑1 (MQ=255)
ctacACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTctct > 1:3578993/1‑93 (MQ=255)
ctacACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTctct > 1:5189523/1‑93 (MQ=255)
ctacACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTctct < 1:163380/93‑1 (MQ=255)
tacACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCtt < 1:3216133/93‑1 (MQ=255)
tacACCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCtt < 1:5491459/93‑1 (MQ=255)
acacCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCttg > 1:1327943/1‑93 (MQ=255)
acacCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCttg > 1:2810809/1‑93 (MQ=255)
acacCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGGCACCCGGACAGACACCGTTATGGACTTCTCttt > 1:4588080/1‑92 (MQ=255)
cacCCCATCCGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCttgt < 2:5993707/93‑1 (MQ=255)
cacCCCAGCTGCCATCCATAACAACCGATT‑C‑A‑CCACC‑CTCGCGAGGCGTTGTTGCCCGTCGCCCGGACAGACACCGTTATGGACTTCTCttgt < 1:3927668/93‑1 (MQ=255)
ctcccATTTGCCATCCACAACAACCGATT‑C‑A‑CC‑CCGCTCGCGAGGCGTTGTTGCCCGTCCCCCGGACAGACACCGTTATGGACTTCTCttgtt < 1:2403204/91‑1 (MQ=255)
acCCCATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCttgtt > 1:150026/1‑93 (MQ=255)
ccATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCa < 2:4836089/93‑1 (MQ=255)
cATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAc < 2:5373334/93‑1 (MQ=255)
cATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAc < 1:1064568/93‑1 (MQ=255)
cATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAc < 2:4738934/93‑1 (MQ=255)
cATCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAc < 2:3659456/93‑1 (MQ=255)
aTCTGCCATCCATAACAACCGATT‑CGC‑CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCCCCCGGACAGACCCCGTTATGGACTTCTCTTGTTGCAcg < 1:1910894/93‑1 (MQ=255)
aTCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcg < 2:4938366/93‑1 (MQ=255)
aTCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcg > 1:4458175/1‑93 (MQ=255)
tCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgt > 1:947164/1‑92 (MQ=255)
tCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgt > 1:5075549/1‑92 (MQ=255)
tCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcga < 2:1890062/93‑1 (MQ=255)
tCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcga > 2:4491862/1‑93 (MQ=255)
tCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcga > 2:1784254/1‑93 (MQ=255)
tCTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcga > 1:4756286/1‑93 (MQ=255)
cTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgat < 1:3667993/93‑1 (MQ=255)
cTGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgat < 2:1946255/93‑1 (MQ=255)
tGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgatc < 1:4700245/93‑1 (MQ=255)
tGCCATCCATAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgatc < 1:4956326/93‑1 (MQ=255)
catccatAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACAGCGTTATGGACTTCTCTTGTTGCAcgatccat > 1:3450875/1‑93 (MQ=255)
catccatAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcggtcgtt > 1:6243501/1‑91 (MQ=255)
catccatAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgatcgat > 2:2620813/1‑93 (MQ=255)
catccatAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgatcgat > 2:4687005/1‑93 (MQ=255)
catccatAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgatcgat < 2:5534189/93‑1 (MQ=255)
atccatAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACgatcgatc < 2:820922/93‑1 (MQ=255)
atccatAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACgatcgatc < 1:2282612/93‑1 (MQ=255)
atccatAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACgatcgatc > 1:713257/1‑93 (MQ=255)
tccatAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCa > 1:601144/1‑93 (MQ=255)
ccatAACAGCCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCaa < 2:4393459/93‑1 (MQ=255)
ccatAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCaa < 1:2177295/93‑1 (MQ=255)
catAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAAt < 2:2374665/93‑1 (MQ=255)
catAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAAt < 2:1410408/93‑1 (MQ=255)
catAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAAt > 1:4799283/1‑93 (MQ=255)
catAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAAt < 1:4143440/93‑1 (MQ=255)
atAACAACCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAAtt < 1:2000778/93‑1 (MQ=255)
acaacCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACCGACACCGTTATGGACTTCTCTTGTTGCACGAGCGATCAATTGtt > 2:2801647/1‑93 (MQ=255)
acaacCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGGTGTTGCCCGTCACCCGGACAGACACCCCTATGGACTTCTCTTGTTGGACGATCGTTCCattatt > 2:4299738/1‑93 (MQ=255)
caacCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTa < 2:1705009/93‑1 (MQ=255)
caacCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTa < 1:2595487/93‑1 (MQ=255)
aacCGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTat < 1:118156/93‑1 (MQ=255)
ccGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTatgc < 1:5839287/93‑1 (MQ=255)
cGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTatgca < 2:1221142/93‑1 (MQ=255)
cGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTatgca < 2:1159117/93‑1 (MQ=255)
cGATT‑C‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTatgca < 2:2659326/93‑1 (MQ=255)
|
ACACTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑C‑A‑CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATG > NC_000913/4498453‑4498632
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑A‑CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACA > NC_000913/4498458‑4498643
|
GGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑A‑CC‑CC‑CC < SRR4302533.3228225/94‑1 (MQ=60)
GTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑A‑CC‑CC‑Cct < SRR4302533.312335/94‑3 (MQ=60)
TACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑A‑CC‑CC‑Cctc < SRR4302533.2068344/94‑4 (MQ=60)
GACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTCCACCCCAGCTGCCATCCATAACAACCGATTC‑A‑CC‑CC‑Cctc < SRR4302533.1802239/94‑4 (MQ=60)
ACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCG < SRR4302533.1075343/94‑1 (MQ=60)
TGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCG > SRR4302533.3478670/1‑94 (MQ=60)
CAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAG < SRR4302533.2459117/94‑1 (MQ=60)
CAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAG < SRR4302533.2908552/94‑1 (MQ=60)
AAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGG > SRR4302533.5460701/1‑94 (MQ=60)
AAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGG > SRR4302533.5258354/1‑94 (MQ=60)
AAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGG > SRR4302533.1516011/1‑94 (MQ=60)
AGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGC < SRR4302533.5716968/94‑1 (MQ=60)
GGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTT < SRR4302533.1073896/94‑1 (MQ=60)
GGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTT < SRR4302533.5550823/94‑1 (MQ=60)
GGGGGCCTTCGCTCCTCTGACATTACTAAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTT < SRR4302533.2639807/94‑1 (MQ=60)
GGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTT < SRR4302533.6158941/94‑1 (MQ=60)
GCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTG > SRR4302533.6184745/1‑94 (MQ=60)
GCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTG > SRR4302533.698686/1‑94 (MQ=60)
GCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTG > SRR4302533.3341268/1‑94 (MQ=60)
GCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑A‑CCACC‑ATCGCGAGACGTTGTTG > SRR4302533.1970749/1‑94 (MQ=60)
CCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGC < SRR4302533.1990160/94‑1 (MQ=60)
CTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCC > SRR4302533.1176584/1‑94 (MQ=60)
CTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCC < SRR4302533.2336213/94‑1 (MQ=60)
TTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCC < SRR4302533.5186039/94‑1 (MQ=60)
CGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGT < SRR4302533.4586785/94‑1 (MQ=60)
CGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGT < SRR4302533.87023/94‑1 (MQ=60)
CGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGT > SRR4302533.4279907/1‑94 (MQ=60)
GCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTC > SRR4302533.2297548/1‑94 (MQ=60)
GCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTC > SRR4302533.2404087/1‑94 (MQ=60)
GCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTC > SRR4302533.4670463/1‑94 (MQ=60)
GCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTC > SRR4302533.4858607/1‑94 (MQ=60)
GCTCCTATGACATTACTCAACATTATCACTACTACCACCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTC < SRR4302533.3984564/94‑1 (MQ=60)
CTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCA > SRR4302533.2337953/1‑94 (MQ=60)
CTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCA > SRR4302533.411261/1‑94 (MQ=60)
CTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCA > SRR4302533.1495323/1‑94 (MQ=60)
TCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCAC > SRR4302533.2278823/1‑94 (MQ=60)
TCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCAC > SRR4302533.1621347/1‑94 (MQ=60)
TCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCAC > SRR4302533.4466776/1‑94 (MQ=60)
cataattatttctttttttttccactcaccccccccatcctcCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACC < SRR4302533.4992452/52‑1 (MQ=60)
TCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACACG > SRR4302533.703154/1‑94 (MQ=60)
TGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGA > SRR4302533.662902/1‑94 (MQ=60)
ACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACA > SRR4302533.1851409/1‑94 (MQ=60)
ACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACA < SRR4302533.1753483/94‑1 (MQ=60)
CATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAG > SRR4302533.5343602/1‑94 (MQ=60)
ATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGA > SRR4302533.1357468/1‑94 (MQ=60)
ATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGA > SRR4302533.5552393/1‑94 (MQ=60)
TTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGAC < SRR4302533.3001623/94‑1 (MQ=60)
TTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGAC > SRR4302533.3190357/1‑94 (MQ=60)
TTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGAC < SRR4302533.2465285/94‑1 (MQ=60)
ACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACAC > SRR4302533.31389/1‑94 (MQ=60)
CTCAGTATTTTCACTACTACCCCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACC < SRR4302533.246785/94‑1 (MQ=60)
CTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGGCAGACACC > SRR4302533.1126667/1‑94 (MQ=60)
CTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACC < SRR4302533.493268/94‑1 (MQ=60)
CTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACC < SRR4302533.1382590/94‑1 (MQ=60)
AGTATTTTCACTACTACCCCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTT < SRR4302533.1792877/94‑1 (MQ=60)
AGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTT < SRR4302533.4753122/94‑1 (MQ=60)
TATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTAT < SRR4302533.4290623/94‑1 (MQ=60)
TATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTAT < SRR4302533.2271985/94‑1 (MQ=60)
TTTTTCACTACTACACCCCATCTGCCATCCATAACAACCTATTCGC‑CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCCCCCGGACAGACACCGTTATG < SRR4302533.4190460/94‑1 (MQ=60)
ATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTCGC‑CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATG < SRR4302533.1745322/94‑1 (MQ=60)
ATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATG > SRR4302533.2589425/1‑94 (MQ=60)
ATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATG < SRR4302533.6227744/94‑1 (MQ=60)
TTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGG < SRR4302533.547527/94‑1 (MQ=60)
TTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGG < SRR4302533.3863383/94‑1 (MQ=60)
TTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGG > SRR4302533.5620806/1‑94 (MQ=60)
TTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGA < SRR4302533.2216091/94‑1 (MQ=60)
TTCACTACTACCCCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGAC < SRR4302533.1656980/94‑1 (MQ=60)
TTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGAC > SRR4302533.4892121/1‑94 (MQ=60)
TCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACT < SRR4302533.2292855/94‑1 (MQ=60)
CACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTT < SRR4302533.4519413/94‑1 (MQ=60)
CACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTT > SRR4302533.544533/1‑94 (MQ=60)
ACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTC > SRR4302533.1633299/1‑94 (MQ=60)
CTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCT < SRR4302533.583313/94‑1 (MQ=60)
CTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCT > SRR4302533.4745382/1‑94 (MQ=60)
CTACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCT < SRR4302533.2307128/94‑1 (MQ=60)
CCACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCT < SRR4302533.710548/94‑1 (MQ=60)
TACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTC > SRR4302533.4758373/1‑94 (MQ=60)
CCTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCT < SRR4302533.4445666/94‑1 (MQ=60)
ACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCT > SRR4302533.5220837/1‑94 (MQ=60)
ACTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCT > SRR4302533.3601045/1‑94 (MQ=60)
CTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTT < SRR4302533.164420/94‑1 (MQ=60)
CTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTT > SRR4302533.5038027/1‑94 (MQ=60)
CTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTT < SRR4302533.6097070/94‑1 (MQ=60)
CTACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCAGACAGACACCGTTATGGACTTCTCTT > SRR4302533.866490/1‑94 (MQ=60)
TACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTG > SRR4302533.3278754/1‑94 (MQ=60)
TACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTG > SRR4302533.2828106/1‑94 (MQ=60)
TACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTG > SRR4302533.1335911/1‑94 (MQ=60)
TACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTG < SRR4302533.5524586/94‑1 (MQ=60)
TACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTG > SRR4302533.1481526/1‑94 (MQ=60)
TACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTG > SRR4302533.3206011/1‑94 (MQ=60)
TACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTG < SRR4302533.3235961/94‑1 (MQ=60)
TACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGGCACCCGGACAGACACCGTTATGGACTTCTCTTT > SRR4302533.4615871/1‑94 (MQ=60)
ACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGTCCGTCACCCCGCCAGACCCCGTTATGGGCTTCTCTTGT > SRR4302533.4327120/1‑94 (MQ=60)
ACACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGT > SRR4302533.2638273/1‑94 (MQ=60)
CACCCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTT > SRR4302533.150988/1‑94 (MQ=60)
CACCCCAGCTGCCATCCATAACAACCGATTC‑A‑CCACC‑CTCGCGAGGCGTTGTTGCCCGTCGCCCGGACAGACACCGTTATGGACTTCTCTTGTT < SRR4302533.3951648/94‑1 (MQ=60)
ctCCCATTTGCCATCCACAACAACCGATTC‑A‑CC‑CCGCTCGCGAGGCGTTGTTGCCCGTCCCCCGGACAGACACCGTTATGGACTTCTCTTGTTG < SRR4302533.2418046/92‑1 (MQ=60)
CCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTTCA > SRR4302533.4322747/1‑94 (MQ=60)
CCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCA > SRR4302533.4844988/1‑94 (MQ=60)
CCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCA > SRR4302533.4822458/1‑94 (MQ=60)
CCCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCA < SRR4302533.4789580/94‑1 (MQ=60)
CCATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAC < SRR4302533.4747865/94‑1 (MQ=60)
CATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACG > SRR4302533.4485139/1‑94 (MQ=60)
CATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACG < SRR4302533.1070821/94‑1 (MQ=60)
ATCTGCCATCCATAACAACCGATTCGC‑CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCCCCCGGACAGACCCCGTTATGGACTTCTCTTGTTGCACGA < SRR4302533.1922552/94‑1 (MQ=60)
ATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGT > SRR4302533.5106230/1‑94 (MQ=60)
ATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGT > SRR4302533.952733/1‑94 (MQ=60)
ATCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGA > SRR4302533.4785149/1‑94 (MQ=60)
TCTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGAT < SRR4302533.5140819/94‑1 (MQ=60)
CTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATC > SRR4302533.2873809/1‑94 (MQ=60)
CTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATC > SRR4302533.64688/1‑94 (MQ=60)
CTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATC < SRR4302533.160780/94‑1 (MQ=60)
CTGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATC < SRR4302533.3690537/94‑1 (MQ=60)
TGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCG < SRR4302533.4777432/94‑1 (MQ=60)
TGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCG < SRR4302533.4728744/94‑1 (MQ=60)
TGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCG > SRR4302533.1767589/1‑94 (MQ=60)
TGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCG < SRR4302533.4986349/94‑1 (MQ=60)
CGCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCG < SRR4302533.3019037/94‑1 (MQ=60)
GCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGA < SRR4302533.5071484/94‑1 (MQ=60)
GCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGA > SRR4302533.2087066/1‑94 (MQ=60)
GCCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGA < SRR4302533.1279993/94‑1 (MQ=60)
CCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACAGCGTTATGGACTTCTCTTGTTGCACGATCCAT > SRR4302533.3472183/1‑94 (MQ=60)
CCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGGTCGTT > SRR4302533.6280874/1‑94 (MQ=60)
CCATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGAT > SRR4302533.70498/1‑94 (MQ=60)
CATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATC > SRR4302533.717465/1‑94 (MQ=60)
ATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCA > SRR4302533.604679/1‑94 (MQ=60)
ATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCA < SRR4302533.2296742/94‑1 (MQ=60)
ATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCA > SRR4302533.5736466/1‑94 (MQ=60)
ATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCA > SRR4302533.256426/1‑94 (MQ=60)
ATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCA < SRR4302533.2855755/94‑1 (MQ=60)
ATCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCA < SRR4302533.1335915/94‑1 (MQ=60)
TCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAA < SRR4302533.3675175/94‑1 (MQ=60)
TCCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAA > SRR4302533.4672640/1‑94 (MQ=60)
CCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAAT < SRR4302533.2190715/94‑1 (MQ=60)
CCATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAAT > SRR4302533.4828355/1‑94 (MQ=60)
CATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATT < SRR4302533.4168558/94‑1 (MQ=60)
ATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTG < SRR4302533.2013096/94‑1 (MQ=60)
ATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTG > SRR4302533.5626436/1‑94 (MQ=60)
ATAACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTG < SRR4302533.3666058/94‑1 (MQ=60)
ACAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTA < SRR4302533.5886169/94‑1 (MQ=60)
CAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTAT < SRR4302533.2611439/94‑1 (MQ=60)
CAACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTAT < SRR4302533.2701227/94‑1 (MQ=60)
AACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATG < SRR4302533.118907/94‑1 (MQ=60)
ACCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGC < SRR4302533.3728736/94‑1 (MQ=60)
CCGATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCA < SRR4302533.5874591/94‑1 (MQ=60)
ATTC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGC > SRR4302533.2949832/1‑94 (MQ=60)
TC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTG < SRR4302533.5600132/94‑1 (MQ=60)
TC‑ACCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTG < SRR4302533.6285651/94‑1 (MQ=60)
acCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGAC > SRR4302533.5963072/3‑94 (MQ=60)
acCC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGAC > SRR4302533.798349/3‑94 (MQ=60)
C‑CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACA > SRR4302533.716908/1‑94 (MQ=60)
CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACAC > SRR4302533.3338828/1‑94 (MQ=60)
C‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACC > SRR4302533.1098934/1‑94 (MQ=60)
C‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACC > SRR4302533.491388/1‑94 (MQ=60)
C‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACC > SRR4302533.2893603/1‑94 (MQ=60)
C‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCAC > SRR4302533.2625787/1‑94 (MQ=60)
CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCATTTGTTATGCATGCTGACACCACA > SRR4302533.3253332/1‑94 (MQ=60)
CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACA < SRR4302533.4891921/94‑1 (MQ=60)
CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGAATGCTGACACCACA > SRR4302533.1492287/1‑94 (MQ=60)
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GGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTC‑A‑CC‑CC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACA > NC_000913/4498458‑4498643
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
