Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,572,726	T→C	P341P (CCT→CCC)	yjiU →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,572,726	0	T	C	100.0%	793.6 / NA	246	P341P (CCT→CCC)	yjiU	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (136/110); total (136/110)

Only 100 of 255 total aligned reads displayed.

CCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCA  >  NC_000913/4572636‑4572815

ccATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCaa                                                                                         >  2:3150126/1‑93 (MQ=255)

 cATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGGGTCGCCCCaaa                                                                                        >  1:4839773/1‑93 (MQ=255)

 cATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCaaa                                                                                        >  1:1763580/1‑93 (MQ=255)

   ttATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACg                                                                                      >  2:154474/1‑93 (MQ=255)

    tATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACgg                                                                                     >  2:5722599/1‑93 (MQ=255)

     aTCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGa                                                                                    <  2:5041547/93‑1 (MQ=255)

     aTCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGa                                                                                    <  2:3336902/93‑1 (MQ=255)

      tCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGAc                                                                                   >  2:3064060/1‑93 (MQ=255)

       cTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACt                                                                                  <  1:664559/93‑1 (MQ=255)

        ttAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCCAACGGACTa                                                                                 >  2:5322880/1‑93 (MQ=255)

          aaGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAAc                                                                               <  1:732434/93‑1 (MQ=255)

           aGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACa                                                                              >  1:5519133/1‑93 (MQ=255)

            gCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAg                                                                             >  2:2454329/1‑93 (MQ=255)

             ccTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGc                                                                            <  1:3359629/93‑1 (MQ=255)

              cTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGcc                                                                           <  2:1835579/93‑1 (MQ=255)

               tGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCt                                                                          >  2:3098018/1‑93 (MQ=255)

                 aaGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTgg                                                                        >  2:2073101/1‑93 (MQ=255)

                 aaGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTgg                                                                        >  2:5567000/1‑93 (MQ=255)

                 aaGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTgg                                                                        <  2:6169734/93‑1 (MQ=255)

                    tgtTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGaaa                                                                     <  1:1589379/93‑1 (MQ=255)

                    tgtTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGaaa                                                                     >  1:891006/1‑93 (MQ=255)

                      tttAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAaca                                                                   <  1:3539288/93‑1 (MQ=255)

                      tttAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAaca                                                                   >  1:4776417/1‑93 (MQ=255)

                        tAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAAcaca                                                                 <  1:1063663/93‑1 (MQ=255)

                        tAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAAcaca                                                                 >  1:5884132/1‑93 (MQ=255)

                          aTGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAgg                                                               <  2:4668723/93‑1 (MQ=255)

                           tGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAggg                                                              <  2:4059357/93‑1 (MQ=255)

                             aaaaCGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGc                                                            <  2:4365362/93‑1 (MQ=255)

                             aaaaCGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGc                                                            >  1:3946631/1‑93 (MQ=255)

                             aaaaCGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGc                                                            <  2:4814913/93‑1 (MQ=255)

                              aaaCGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCt                                                           <  2:1592718/93‑1 (MQ=255)

                                aCGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGGGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTgg                                                         >  2:4353697/1‑93 (MQ=255)

                                  ggcggcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTgggt                                                       >  2:5880820/1‑91 (MQ=255)

                                  ggcggcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGtt                                                       <  2:88290/93‑1 (MQ=255)

                                   gcggcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTc                                                      >  1:2734881/1‑93 (MQ=255)

                                   gcggcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGGTc                                                      >  2:406909/1‑93 (MQ=255)

                                      gcCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAgg                                                   >  1:6164404/1‑93 (MQ=255)

                                       cccccTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggt                                                  >  1:4365446/1‑93 (MQ=255)

                                         cccTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttg                                                <  2:3611550/93‑1 (MQ=255)

                                         cccTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttg                                                <  1:1106252/93‑1 (MQ=255)

                                         cccTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGCGGCTGGGTCAggttg                                                >  2:3500981/1‑93 (MQ=255)

                                           cTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttggt                                              >  1:4166263/1‑93 (MQ=255)

                                            ttAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttggtt                                             >  2:197643/1‑93 (MQ=255)

                                            ttAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttggtt                                             >  1:5260373/1‑93 (MQ=255)

                                            ttAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAggttggtt                                             >  1:4284482/1‑93 (MQ=255)

                                             tAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTa                                            <  2:5672296/93‑1 (MQ=255)

                                             tAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTa                                            >  1:3016637/1‑93 (MQ=255)

                                             tAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTa                                            >  2:744061/1‑93 (MQ=255)

                                             tAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTa                                            >  2:3814384/1‑93 (MQ=255)

                                             tAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTa                                            <  2:1467044/93‑1 (MQ=255)

                                              aaGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTAc                                           <  2:4221980/93‑1 (MQ=255)

                                               aGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTAcc                                          <  1:1008841/93‑1 (MQ=255)

                                                gCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCa                                         >  1:382100/1‑93 (MQ=255)

                                                 cTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAg                                        <  1:2441594/93‑1 (MQ=255)

                                                 cTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAg                                        <  1:4722281/93‑1 (MQ=255)

                                                  tttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAgg                                       <  1:91535/93‑1 (MQ=255)

                                                  tttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGCTCAGGTTGGTTACCAgg                                       >  2:1981409/1‑93 (MQ=255)

                                                   ttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAggg                                      >  2:5898974/1‑93 (MQ=255)

                                                   ttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAggg                                      >  2:1192280/1‑93 (MQ=255)

                                                   ttCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGGTGGTTACCAggg                                      >  1:1469916/1‑93 (MQ=255)

                                                    tCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAgggg                                     >  2:1400233/1‑93 (MQ=255)

                                                    tCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAgggg                                     >  2:394153/1‑93 (MQ=255)

                                                    tCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAgcgg                                     >  1:1270942/1‑93 (MQ=255)

                                                     cTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGc                                    <  1:937393/93‑1 (MQ=255)

                                                      tGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCt                                   <  2:3699782/93‑1 (MQ=255)

                                                       gAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTg                                  <  2:2966267/93‑1 (MQ=255)

                                                       gAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTg                                  >  1:6103886/1‑93 (MQ=255)

                                                        aaaTGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTgg                                 >  1:708186/1‑93 (MQ=255)

                                                         aaTGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGga                                <  1:3203190/93‑1 (MQ=255)

                                                          aTGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGgag                               >  1:2586514/1‑93 (MQ=255)

                                                          aTGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGgag                               >  2:1367384/1‑93 (MQ=255)

                                                           tgttgttgtTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGgaga                              >  1:5230513/1‑93 (MQ=255)

                                                             ttgttgttCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGaaa                            <  1:3771467/93‑1 (MQ=255)

                                                              tgttgttCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGaaaa                           >  1:1238835/1‑93 (MQ=255)

                                                              tgttgttCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGaaaa                           >  1:1959300/1‑93 (MQ=255)

                                                               gttgttCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAAt                          >  1:6223084/1‑93 (MQ=255)

                                                                  gttCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACa                       <  2:1797780/93‑1 (MQ=255)

                                                                   ttCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACAt                      <  2:6017448/93‑1 (MQ=255)

                                                                    tCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATa                     >  2:3389581/1‑93 (MQ=255)

                                                                     ccGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATaa                    <  2:2892670/93‑1 (MQ=255)

                                                                     ccGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATaa                    >  2:3003389/1‑93 (MQ=255)

                                                                      cGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAag                   >  1:408982/1‑93 (MQ=255)

                                                                      cGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAag                   <  1:288726/93‑1 (MQ=255)

                                                                      cGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAag                   <  1:5144155/93‑1 (MQ=255)

                                                                       gggAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAaga                  <  2:2431640/93‑1 (MQ=255)

                                                                       gggAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAaga                  <  1:5002681/93‑1 (MQ=255)

                                                                        gtaaTTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTCCCAGGAGCTGGAGAAAATACATAagag                 <  2:2240936/91‑1 (MQ=255)

                                                                        ggAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAagag                 >  1:2279875/1‑93 (MQ=255)

                                                                        ggAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAagag                 >  1:3033577/1‑93 (MQ=255)

                                                                         gAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTCGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGc                <  1:4445688/93‑1 (MQ=255)

                                                                          aaTTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGcc               >  2:641406/1‑93 (MQ=255)

                                                                              cATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCtt           <  2:2682199/93‑1 (MQ=255)

                                                                                 gCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCa        <  1:1909349/93‑1 (MQ=255)

                                                                                  cGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCAc       <  2:497274/93‑1 (MQ=255)

                                                                                   gTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACt      <  2:4469463/93‑1 (MQ=255)

                                                                                      gCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGc   <  2:5249555/93‑1 (MQ=255)

                                                                                      gCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGc   >  1:5717824/1‑93 (MQ=255)

                                                                                      gCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGc   <  1:5327610/93‑1 (MQ=255)

                                                                                       ccccAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCa  <  2:4618181/93‑1 (MQ=255)

                                                                                       ccccAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCa  <  1:58217/93‑1 (MQ=255)

CCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCA  >  NC_000913/4572636‑4572815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TAACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGA  >  NC_000913/4572633‑4572818

TAACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCC                                                                                              >  SRR4302533.1809177/1‑94 (MQ=60)

   CCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGGGTCGCCCCAAA                                                                                           >  SRR4302533.4869107/1‑94 (MQ=60)

   CCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAA                                                                                           >  SRR4302533.1774319/1‑94 (MQ=60)

    CATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAAC                                                                                          <  SRR4302533.5743343/94‑1 (MQ=60)

    CATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAAC                                                                                          >  SRR4302533.4289144/1‑94 (MQ=60)

     ATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACG                                                                                         <  SRR4302533.917306/94‑1 (MQ=60)

          CTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTA                                                                                    <  SRR4302533.668483/94‑1 (MQ=60)

            TAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAAC                                                                                  <  SRR4302533.1974253/94‑1 (MQ=60)

            TAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAAC                                                                                  >  SRR4302533.4766368/1‑94 (MQ=60)

            TAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAAC                                                                                  >  SRR4302533.68963/1‑94 (MQ=60)

            TAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAAC                                                                                  <  SRR4302533.274892/94‑1 (MQ=60)

             AAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACA                                                                                 <  SRR4302533.4129726/94‑1 (MQ=60)

             AAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACA                                                                                 >  SRR4302533.5552457/1‑94 (MQ=60)

             AAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACA                                                                                 <  SRR4302533.736744/94‑1 (MQ=60)

              AGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAG                                                                                <  SRR4302533.3043556/94‑1 (MQ=60)

              AGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAG                                                                                <  SRR4302533.4660020/94‑1 (MQ=60)

                CCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCC                                                                              <  SRR4302533.3380386/94‑1 (MQ=60)

                 CTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGCTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCT                                                                             <  SRR4302533.925022/94‑1 (MQ=60)

                 CTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGATGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCT                                                                             >  SRR4302533.3633540/1‑94 (MQ=60)

                  TGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTG                                                                            >  SRR4302533.1496140/1‑94 (MQ=60)

                   GAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGG                                                                           >  SRR4302533.6234380/1‑94 (MQ=60)

                      GTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAA                                                                        >  SRR4302533.896242/1‑94 (MQ=60)

                       TGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAAC                                                                       <  SRR4302533.483839/94‑1 (MQ=60)

                       TGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAAC                                                                       <  SRR4302533.5290416/94‑1 (MQ=60)

                       TGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAAC                                                                       <  SRR4302533.1598991/94‑1 (MQ=60)

                        GTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACA                                                                      >  SRR4302533.4805354/1‑94 (MQ=60)

                         TTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACAC                                                                     <  SRR4302533.3784590/94‑1 (MQ=60)

                         TTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACAC                                                                     <  SRR4302533.3561096/94‑1 (MQ=60)

                         TTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACAC                                                                     >  SRR4302533.2545713/1‑94 (MQ=60)

                          TTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACA                                                                    >  SRR4302533.5919691/1‑94 (MQ=60)

                           TAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAG                                                                   <  SRR4302533.1069912/94‑1 (MQ=60)

                           TAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAG                                                                   <  SRR4302533.3504835/94‑1 (MQ=60)

                           TAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAG                                                                   >  SRR4302533.1432088/1‑94 (MQ=60)

                            AATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGG                                                                  <  SRR4302533.1093224/94‑1 (MQ=60)

                             ATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGG                                                                 >  SRR4302533.5991778/1‑94 (MQ=60)

                             ATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGG                                                                 <  SRR4302533.454852/94‑1 (MQ=60)

                             ATGAAAACGGCGGCACCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGG                                                                 <  SRR4302533.5620671/94‑1 (MQ=60)

                              TGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGG                                                                <  SRR4302533.1276593/94‑1 (MQ=60)

                               GAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGC                                                               >  SRR4302533.3970700/1‑94 (MQ=60)

                                AAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCT                                                              >  SRR4302533.2997721/1‑94 (MQ=60)

                                    CGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTT                                                          <  SRR4302533.3864600/94‑1 (MQ=60)

                                     GGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTC                                                         >  SRR4302533.2751657/1‑94 (MQ=60)

                                      GCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCA                                                        <  SRR4302533.6068063/94‑1 (MQ=60)

                                        GGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGG                                                      >  SRR4302533.6201462/1‑94 (MQ=60)

                                        GGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGG                                                      >  SRR4302533.6155487/1‑94 (MQ=60)

                                         GCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGT                                                     >  SRR4302533.4391800/1‑94 (MQ=60)

                                           CCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTG                                                   <  SRR4302533.3053130/94‑1 (MQ=60)

                                           CCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTG                                                   <  SRR4302533.1108971/94‑1 (MQ=60)

                                            CCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGG                                                  <  SRR4302533.1112811/94‑1 (MQ=60)

                                            CCCTTAAGCTTTCTGAAATGTTGGTGTTCCTGGAATTCATGCGTCGCCCCAAACGGACTAACACGCTGGAACCACAGGGGCTGGTTCAtggtgc                                                  >  SRR4302533.2015777/1‑88 (MQ=60)

                                             CCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGT                                                 >  SRR4302533.526122/1‑94 (MQ=60)

                                             CCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGT                                                 >  SRR4302533.766559/1‑94 (MQ=60)

                                             CCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGT                                                 >  SRR4302533.3201854/1‑94 (MQ=60)

                                             CCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGT                                                 >  SRR4302533.4191507/1‑94 (MQ=60)

                                             CCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGT                                                 <  SRR4302533.5007741/94‑1 (MQ=60)

                                              CTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTT                                                >  SRR4302533.2382442/1‑94 (MQ=60)

                                              CTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTT                                                >  SRR4302533.5291953/1‑94 (MQ=60)

                                              CTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTT                                                >  SRR4302533.4310229/1‑94 (MQ=60)

                                               TTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTA                                               >  SRR4302533.3035086/1‑94 (MQ=60)

                                                 AAGCTTTCTGAAATGTTGTTGTTCGGGGAATTCATGCTTCGCCCCAAACGGACTATCAGCCTGGAAACTCAGGGGCTGGTTCAGGTTGGTTACC                                             <  SRR4302533.4382/94‑1 (MQ=60)

                                                 AAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACC                                             <  SRR4302533.2914129/94‑1 (MQ=60)

                                                  AGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCA                                            <  SRR4302533.1014745/94‑1 (MQ=60)

                                                  AGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCA                                            >  SRR4302533.1203417/1‑94 (MQ=60)

                                                  AGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCA                                            >  SRR4302533.384405/1‑94 (MQ=60)

                                                   GCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAG                                           <  SRR4302533.1556107/94‑1 (MQ=60)

                                                    CTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGG                                          <  SRR4302533.4750912/94‑1 (MQ=60)

                                                    CTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGG                                          <  SRR4302533.2456668/94‑1 (MQ=60)

                                                     TTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGG                                         <  SRR4302533.92115/94‑1 (MQ=60)

                                                     TTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGGTGGTTACCAGGG                                         >  SRR4302533.1478774/1‑94 (MQ=60)

                                                      TTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCTCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGG                                        <  SRR4302533.3288259/94‑1 (MQ=60)

                                                      TTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGCGG                                        >  SRR4302533.1278544/1‑94 (MQ=60)

                                                        CTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCT                                      <  SRR4302533.942900/94‑1 (MQ=60)

                                                        CTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCT                                      >  SRR4302533.5319447/1‑94 (MQ=60)

                                                         TGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTG                                     >  SRR4302533.6140729/1‑94 (MQ=60)

                                                         TGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTG                                     >  SRR4302533.5134474/1‑94 (MQ=60)

                                                         TGAAATGTTGTTGTGCCCGCACTGCATGCGTCCCCGCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTG                                     <  SRR4302533.1829123/94‑1 (MQ=60)

                                                          GAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGG                                    >  SRR4302533.712368/1‑94 (MQ=60)

                                                          GAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGG                                    <  SRR4302533.1801328/94‑1 (MQ=60)

                                                           AAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGA                                   >  SRR4302533.1000971/1‑94 (MQ=60)

                                                           AAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGA                                   >  SRR4302533.939160/1‑94 (MQ=60)

                                                            AATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAG                                  <  SRR4302533.714999/94‑1 (MQ=60)

                                                            AATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAG                                  <  SRR4302533.3222904/94‑1 (MQ=60)

                                                            AATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAG                                  >  SRR4302533.2602415/1‑94 (MQ=60)

                                                            AATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAG                                  <  SRR4302533.1925946/94‑1 (MQ=60)

                                                            AATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAG                                  <  SRR4302533.1652450/94‑1 (MQ=60)

                                                             ATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGA                                 >  SRR4302533.501074/1‑94 (MQ=60)

                                                             ATGTTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGA                                 >  SRR4302533.5261975/1‑94 (MQ=60)

                                                                TTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAA                              >  SRR4302533.1246238/1‑94 (MQ=60)

                                                                TTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAA                              <  SRR4302533.5888074/94‑1 (MQ=60)

                                                                TTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAA                              >  SRR4302533.1971257/1‑94 (MQ=60)

                                                                TTGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAA                              <  SRR4302533.3794586/94‑1 (MQ=60)

                                                                TTGTTGTTCCGGGAATTCATGCGTCGACCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAA                              >  SRR4302533.2620917/1‑94 (MQ=60)

                                                                 TGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGCCTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAAT                             >  SRR4302533.5230644/1‑94 (MQ=60)

                                                                 TGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAAT                             >  SRR4302533.6260379/1‑94 (MQ=60)

                                                                 TGTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAAT                             >  SRR4302533.4396222/1‑94 (MQ=60)

                                                                  GTTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATA                            >  SRR4302533.6276032/1‑94 (MQ=60)

                                                                   TTGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATAC                           >  SRR4302533.3467200/1‑94 (MQ=60)

                                                                    TGTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACA                          <  SRR4302533.2274875/94‑1 (MQ=60)

                                                                     GTTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACAT                         <  SRR4302533.5785823/94‑1 (MQ=60)

                                                                      TTCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATA                        <  SRR4302533.4311332/94‑1 (MQ=60)

                                                                       TCCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAA                       <  SRR4302533.4176066/94‑1 (MQ=60)

                                                                        CCGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAG                      >  SRR4302533.411436/1‑94 (MQ=60)

                                                                         CGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGA                     >  SRR4302533.5313704/1‑94 (MQ=60)

                                                                         CGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGA                     <  SRR4302533.290489/94‑1 (MQ=60)

                                                                         CGGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGA                     <  SRR4302533.5175243/94‑1 (MQ=60)

                                                                          GGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAG                    <  SRR4302533.5520850/94‑1 (MQ=60)

                                                                          GGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAG                    >  SRR4302533.2293993/1‑94 (MQ=60)

                                                                          GGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAG                    <  SRR4302533.1046199/94‑1 (MQ=60)

                                                                          GGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAG                    >  SRR4302533.3052136/1‑94 (MQ=60)

                                                                          GGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAG                    <  SRR4302533.5033004/94‑1 (MQ=60)

                                                                          GGGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAG                    <  SRR4302533.669299/94‑1 (MQ=60)

                                                                           GGAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGC                   >  SRR4302533.4006942/1‑94 (MQ=60)

                                                                            GAATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTCGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCC                  <  SRR4302533.4472579/94‑1 (MQ=60)

                                                                              ATTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCC                >  SRR4302533.3823521/1‑94 (MQ=60)

                                                                               TTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCT               >  SRR4302533.124774/1‑94 (MQ=60)

                                                                               TTCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCT               <  SRR4302533.2880469/94‑1 (MQ=60)

                                                                                TCATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTT              <  SRR4302533.3921178/94‑1 (MQ=60)

                                                                                 CATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTG             <  SRR4302533.781100/94‑1 (MQ=60)

                                                                                 CATGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTG             >  SRR4302533.2397077/1‑94 (MQ=60)

                                                                                   TGCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCA           >  SRR4302533.6239663/1‑94 (MQ=60)

                                                                                    GCGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCAC          <  SRR4302533.1920996/94‑1 (MQ=60)

                                                                                     CGTCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACT         <  SRR4302533.4845679/94‑1 (MQ=60)

                                                                                       TCGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGG       <  SRR4302533.5862545/94‑1 (MQ=60)

                                                                                        CGCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGC      >  SRR4302533.5752355/1‑94 (MQ=60)

                                                                                         GCCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCA     <  SRR4302533.5359535/94‑1 (MQ=60)

                                                                                          CCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAG    >  SRR4302533.4522274/1‑94 (MQ=60)

                                                                                          CCCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAG    <  SRR4302533.58602/94‑1 (MQ=60)

                                                                                           CCCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGG   >  SRR4302533.1610366/1‑94 (MQ=60)

                                                                                            CCAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGA  <  SRR4302533.3542935/94‑1 (MQ=60)

TAACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGA  >  NC_000913/4572633‑4572818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`