Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,573,190 Δ1 bp coding (1487/1542 nt) yjiU → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,573,1890G.100.0% 1099.2 / NA 236coding (1486/1542 nt)yjiUhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (103/133);  total (103/133)

Only 100 of 256 total aligned reads displayed.

TTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCC  >  NC_000913/4573097‑4573277
                                                                                            |                                                                                        
ttatCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAg                                                                                          <  1:5530655/93‑1 (MQ=255)
ttatCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAg                                                                                          >  2:443531/1‑93 (MQ=255)
ttatCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAg                                                                                          <  2:3718410/93‑1 (MQ=255)
ttatCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAg                                                                                          >  2:5961356/1‑93 (MQ=255)
 tatCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAga                                                                                         <  2:2795718/93‑2 (MQ=255)
  atCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAgag                                                                                        >  2:409173/1‑91 (MQ=255)
  atCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAgag                                                                                        <  2:4247491/93‑3 (MQ=255)
     aaTACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCat                                                                                    >  2:636496/1‑93 (MQ=255)
     aaTACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCat                                                                                    <  2:3501579/93‑1 (MQ=255)
     aaTACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCat                                                                                    >  2:324203/1‑93 (MQ=255)
      aTACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCata                                                                                   >  2:3789020/1‑93 (MQ=255)
      aTACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCata                                                                                   <  2:5822214/93‑1 (MQ=255)
      aTACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCata                                                                                   <  1:1937958/93‑1 (MQ=255)
       tACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCatat                                                                                  >  2:2678382/1‑93 (MQ=255)
       tACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCatat                                                                                  <  2:1559517/93‑1 (MQ=255)
       tACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCatat                                                                                  <  2:4918833/93‑1 (MQ=255)
       tACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCatat                                                                                  <  1:1000573/93‑1 (MQ=255)
        aCATGGCTGAAAGAGTCGTGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATg                                                                                 <  1:5986872/93‑1 (MQ=255)
        aCATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAAGCGTTTTTATTTACCGAAA‑GAGCATATg                                                                                 >  1:5564791/1‑93 (MQ=255)
          aTGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGAc                                                                               <  1:1805302/93‑1 (MQ=255)
           tGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACt                                                                              <  1:5912637/93‑1 (MQ=255)
             gCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACttt                                                                            >  2:564749/1‑93 (MQ=255)
                 aaaGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCt                                                                        <  1:3600666/93‑1 (MQ=255)
                 aaaGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCt                                                                        <  2:3093888/93‑1 (MQ=255)
                 aaaGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCt                                                                        >  2:5126762/1‑93 (MQ=255)
                  aagaagCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCtt                                                                       >  2:5517090/1‑93 (MQ=255)
                   agaagCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCttt                                                                      <  1:1435626/93‑1 (MQ=255)
                    gaagCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCttca                                                                     <  2:6029471/93‑3 (MQ=255)
                        cATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCa                                                                 <  1:4513535/93‑1 (MQ=255)
                        cATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCa                                                                 <  2:226537/93‑1 (MQ=255)
                         aTGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCAc                                                                <  2:1846686/93‑1 (MQ=255)
                         aTGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCAc                                                                >  2:3053134/1‑93 (MQ=255)
                           gggCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACgg                                                              <  1:1257873/93‑1 (MQ=255)
                            ggCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGa                                                             <  1:2212755/93‑1 (MQ=255)
                            ggCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGa                                                             >  1:1530349/1‑93 (MQ=255)
                            ggCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGa                                                             <  1:1227916/93‑1 (MQ=255)
                             gCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAt                                                            >  1:4385743/1‑93 (MQ=255)
                             gCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAt                                                            >  1:6246737/1‑93 (MQ=255)
                              cccAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTAACGAAA‑GAGCATATGACTTTTTATTTCATCACGGATg                                                           >  1:5473232/1‑93 (MQ=255)
                               ccAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGc                                                          >  1:1630833/1‑93 (MQ=255)
                                cAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGCCTTTTTCTTTAATCACGGATGcc                                                         <  2:1086808/93‑1 (MQ=255)
                                cAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGcc                                                         >  2:133/1‑93 (MQ=255)
                                cAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGcc                                                         <  1:2987928/93‑1 (MQ=255)
                                cAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGcc                                                         >  1:3173876/1‑93 (MQ=255)
                                 aaCTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCt                                                        <  2:2025320/93‑1 (MQ=255)
                                  aCTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTg                                                       <  2:768806/93‑1 (MQ=255)
                                  aCTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTg                                                       <  1:4576960/93‑1 (MQ=255)
                                     tACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGAt                                                    >  2:461232/1‑93 (MQ=255)
                                     tACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGAt                                                    <  1:2341123/93‑1 (MQ=255)
                                       ccGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGAttt                                                  <  1:5383393/93‑1 (MQ=255)
                                       ccGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGAttt                                                  >  2:1941321/1‑93 (MQ=255)
                                       ccGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGAttt                                                  <  2:3655520/93‑1 (MQ=255)
                                       ccGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGAttt                                                  <  2:2991112/93‑1 (MQ=255)
                                          gACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGcc                                               >  2:4933971/1‑93 (MQ=255)
                                           aCCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGccc                                              >  2:4345481/1‑93 (MQ=255)
                                             cGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCgg                                            <  1:5147590/93‑1 (MQ=255)
                                             cGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCgg                                            <  2:3275916/93‑1 (MQ=255)
                                              gCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGt                                           >  2:1402369/1‑93 (MQ=255)
                                               cTTGCAGTACTGAAGCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTa                                          <  1:3060747/93‑1 (MQ=255)
                                                    aGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCaa                                     <  1:4036571/93‑1 (MQ=255)
                                                      tACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATa                                   >  1:4100438/1‑93 (MQ=255)
                                                      tACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATa                                   <  2:2577132/93‑1 (MQ=255)
                                                          gAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAAt                               <  1:6020141/93‑1 (MQ=255)
                                                            aaCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATcc                             >  1:3539662/1‑93 (MQ=255)
                                                            aaCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATcc                             <  1:678825/93‑1 (MQ=255)
                                                            aaCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATcc                             <  1:6058567/93‑1 (MQ=255)
                                                             aCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCt                            >  1:3500529/1‑93 (MQ=255)
                                                             aCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCt                            <  2:5200813/93‑1 (MQ=255)
                                                             aCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCt                            <  2:2144050/93‑1 (MQ=255)
                                                              cccGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTg                           >  1:2450278/1‑93 (MQ=255)
                                                               ccGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTgg                          <  1:3487510/93‑1 (MQ=255)
                                                                cGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGa                         <  2:5537490/93‑1 (MQ=255)
                                                                cGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGa                         <  1:4189938/93‑1 (MQ=255)
                                                                cGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGa                         >  1:5280080/1‑93 (MQ=255)
                                                                cGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGa                         <  1:2108510/93‑1 (MQ=255)
                                                                 gATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGAt                        <  2:2620252/93‑1 (MQ=255)
                                                                 gATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGAt                        <  2:1565743/93‑1 (MQ=255)
                                                                  aTGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATa                       >  1:3333217/1‑93 (MQ=255)
                                                                  aTGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATa                       >  2:4736696/1‑93 (MQ=255)
                                                                   tGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATAc                      >  2:3358190/1‑93 (MQ=255)
                                                                   tGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATAc                      <  2:3748872/93‑1 (MQ=255)
                                                                   tGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATAc                      >  1:2253916/1‑93 (MQ=255)
                                                                   tGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATAc                      >  1:4817528/1‑93 (MQ=255)
                                                                    ggCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACg                     <  1:5730235/93‑1 (MQ=255)
                                                                       aaCCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCt                  >  1:2554921/1‑93 (MQ=255)
                                                                        aCCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCtt                 >  2:4057772/1‑93 (MQ=255)
                                                                           gTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTa              >  2:3869047/1‑93 (MQ=255)
                                                                           gTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTa              <  2:5350793/93‑1 (MQ=255)
                                                                           gTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTa              >  1:5882726/1‑93 (MQ=255)
                                                                            tttttATTTACCGAAA‑GAGGATATGACTTTTTCTTTAATCAGGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTaa             >  2:6112890/1‑93 (MQ=255)
                                                                            tttttATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTaa             >  1:784403/1‑93 (MQ=255)
                                                                             ttttATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTaaa            <  2:88574/93‑1 (MQ=255)
                                                                              tttatttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAg           <  1:3870475/93‑1 (MQ=255)
                                                                                tatttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGc         >  1:1320029/1‑93 (MQ=255)
                                                                                  tttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCtt       >  2:559854/1‑93 (MQ=255)
                                                                                  tttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCtt       >  2:2253917/1‑93 (MQ=255)
                                                                                   ttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTa      >  1:26696/1‑93 (MQ=255)
                                                                                   ttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTa      >  2:1703128/1‑93 (MQ=255)
                                                                                    taCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTaa     <  1:4250886/93‑1 (MQ=255)
                                                                                       cGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAAccc  <  1:4216551/93‑1 (MQ=255)
                                                                                            |                                                                                        
TTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCC  >  NC_000913/4573097‑4573277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATC  >  NC_000913/4573097‑4573283
                                                                                             |                                                                                             
TTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGA                                                                                               <  SRR4302533.5564044/94‑1 (MQ=60)
TTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGA                                                                                               >  SRR4302533.3780066/1‑94 (MQ=60)
   TCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCA                                                                                           <  SRR4302533.1975/94‑1 (MQ=60)
    CAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCAT                                                                                          >  SRR4302533.2259438/1‑94 (MQ=60)
      ATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATAT                                                                                        <  SRR4302533.4070047/94‑1 (MQ=60)
      ATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATAT                                                                                        <  SRR4302533.1949773/94‑1 (MQ=60)
       TACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAAGCGTTTTTATTTACCGAAA‑GAGCATATG                                                                                       >  SRR4302533.5598427/1‑94 (MQ=60)
       TACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATG                                                                                       <  SRR4302533.1006413/94‑1 (MQ=60)
       TACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATG                                                                                       <  SRR4302533.485002/94‑1 (MQ=60)
        ACATGGCTGAAAGAGTCGTGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGA                                                                                      <  SRR4302533.6023129/94‑1 (MQ=60)
          ATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACT                                                                                    <  SRR4302533.3502361/94‑1 (MQ=60)
          ATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACT                                                                                    <  SRR4302533.1816291/94‑1 (MQ=60)
           TGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTT                                                                                   <  SRR4302533.5948365/94‑1 (MQ=60)
            GGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTT                                                                                  >  SRR4302533.4742566/1‑94 (MQ=60)
              CTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTT                                                                                >  SRR4302533.4389372/1‑94 (MQ=60)
               TGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTT                                                                               >  SRR4302533.4259161/1‑94 (MQ=60)
               TGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTC                                                                               >  SRR4302533.6053876/1‑94 (MQ=60)
                GAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCT                                                                              <  SRR4302533.3039418/94‑1 (MQ=60)
                GAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCT                                                                              >  SRR4302533.1360626/1‑94 (MQ=60)
                 AAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTT                                                                             <  SRR4302533.3622821/94‑1 (MQ=60)
                  AAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTT                                                                            <  SRR4302533.5518529/94‑1 (MQ=60)
                  AAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTT                                                                            <  SRR4302533.3587288/94‑1 (MQ=60)
                  AAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTCT                                                                            <  SRR4302533.5979473/94‑1 (MQ=60)
                   AGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTA                                                                           <  SRR4302533.1444293/94‑1 (MQ=60)
                    GAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAA                                                                          <  SRR4302533.5835134/94‑1 (MQ=60)
                      AGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATC                                                                        <  SRR4302533.5946433/94‑1 (MQ=60)
                      AGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATC                                                                        <  SRR4302533.5946435/94‑1 (MQ=60)
                        CATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCAC                                                                      <  SRR4302533.4540869/94‑1 (MQ=60)
                         ATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACG                                                                     <  SRR4302533.5299859/94‑1 (MQ=60)
                           GGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGA                                                                   <  SRR4302533.3956472/94‑1 (MQ=60)
                           GGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGA                                                                   >  SRR4302533.1539549/1‑94 (MQ=60)
                           GGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGA                                                                   <  SRR4302533.1265394/94‑1 (MQ=60)
                            GGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAT                                                                  >  SRR4302533.4884324/1‑94 (MQ=60)
                            GGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAT                                                                  <  SRR4302533.1235268/94‑1 (MQ=60)
                            GGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAT                                                                  >  SRR4302533.4412224/1‑94 (MQ=60)
                            GGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAT                                                                  <  SRR4302533.4429004/94‑1 (MQ=60)
                            GGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAT                                                                  >  SRR4302533.6284121/1‑94 (MQ=60)
                            GGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAT                                                                  <  SRR4302533.6059277/94‑1 (MQ=60)
                            GGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAT                                                                  <  SRR4302533.2226408/94‑1 (MQ=60)
                             GCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATG                                                                 <  SRR4302533.4560685/94‑1 (MQ=60)
                             GCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTAACGAAA‑GAGCATATGACTTTTTATTTCATCACGGATG                                                                 >  SRR4302533.5506221/1‑94 (MQ=60)
                              CCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGC                                                                >  SRR4302533.1640710/1‑94 (MQ=60)
                              CCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGC                                                                <  SRR4302533.1916215/94‑1 (MQ=60)
                              CCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGC                                                                >  SRR4302533.1922689/1‑94 (MQ=60)
                               CCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCC                                                               >  SRR4302533.1681172/1‑94 (MQ=60)
                               CCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCC                                                               >  SRR4302533.3193410/1‑94 (MQ=60)
                                CAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCT                                                              <  SRR4302533.667725/94‑1 (MQ=60)
                                CAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCT                                                              <  SRR4302533.3006205/94‑1 (MQ=60)
                                 AACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTG                                                             <  SRR4302533.5592297/94‑1 (MQ=60)
                                  ACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGG                                                            <  SRR4302533.5323673/94‑1 (MQ=60)
                                  ACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGG                                                            <  SRR4302533.4801617/94‑1 (MQ=60)
                                  ACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGG                                                            <  SRR4302533.4604698/94‑1 (MQ=60)
                                    gctcttccgatctgctgtatCTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGAT                                                          <  SRR4302533.5460406/74‑1 (MQ=60)
                                     TACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATT                                                         <  SRR4302533.4202311/94‑1 (MQ=60)
                                     TACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATT                                                         <  SRR4302533.2355616/94‑1 (MQ=60)
                                     TACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATT                                                         <  SRR4302533.2564911/94‑1 (MQ=60)
                                      TCCGGACCGCTTGCAGTACTGAACCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTT                                                        <  SRR4302533.124253/94‑1 (MQ=60)
                                      ACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGTATGCCTGGATTT                                                        <  SRR4302533.5726765/94‑1 (MQ=60)
                                      ACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTT                                                        <  SRR4302533.3512267/94‑1 (MQ=60)
                                      ACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTT                                                        >  SRR4302533.4048012/1‑94 (MQ=60)
                                       CCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTG                                                       <  SRR4302533.5415737/94‑1 (MQ=60)
                                         GGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCC                                                     >  SRR4302533.5680493/1‑94 (MQ=60)
                                             CGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGT                                                 <  SRR4302533.5178694/94‑1 (MQ=60)
                                              GCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTA                                                >  SRR4302533.5318970/1‑94 (MQ=60)
                                              GCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTA                                                >  SRR4302533.2462687/1‑94 (MQ=60)
                                               CTTGCAGTACTGAAGCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAA                                               <  SRR4302533.3079531/94‑1 (MQ=60)
                                               CTTGAAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAA                                               <  SRR4302533.6080697/94‑1 (MQ=60)
                                                TTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAAC                                              <  SRR4302533.4226387/94‑1 (MQ=60)
                                                 TGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACC                                             >  SRR4302533.1000302/1‑94 (MQ=60)
                                                    AGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAAT                                          <  SRR4302533.4061138/94‑1 (MQ=60)
                                                    AGTACTGAAACCCGATGGCAACAGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTCATACCGCATGCCTGGATTTGCCCGGTAACCAAT                                          >  SRR4302533.3081609/1‑94 (MQ=60)
                                                     GTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATA                                         >  SRR4302533.4125392/1‑94 (MQ=60)
                                                       ACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAA                                       <  SRR4302533.3771116/94‑1 (MQ=60)
                                                       ACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAA                                       >  SRR4302533.4269520/1‑94 (MQ=60)
                                                        CTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAA                                      >  SRR4302533.2995593/1‑94 (MQ=60)
                                                        CTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAA                                      >  SRR4302533.2594815/1‑94 (MQ=60)
                                                         TGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAAT                                     <  SRR4302533.1408128/94‑1 (MQ=60)
                                                          GAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATC                                    <  SRR4302533.6056620/94‑1 (MQ=60)
                                                           AAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCC                                   <  SRR4302533.1078542/94‑1 (MQ=60)
                                                           AAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCC                                   >  SRR4302533.4501073/1‑94 (MQ=60)
                                                           AAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCC                                   <  SRR4302533.2256216/94‑1 (MQ=60)
                                                           AAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCC                                   >  SRR4302533.3561473/1‑94 (MQ=60)
                                                            AACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCT                                  >  SRR4302533.3522115/1‑94 (MQ=60)
                                                            AACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCT                                  <  SRR4302533.682838/94‑1 (MQ=60)
                                                            AACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCT                                  <  SRR4302533.6095247/94‑1 (MQ=60)
                                                            AACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCT                                  <  SRR4302533.3533744/94‑1 (MQ=60)
                                                             ACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTG                                 >  SRR4302533.5961375/1‑94 (MQ=60)
                                                             ACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTG                                 >  SRR4302533.2465400/1‑94 (MQ=60)
                                                              CCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGG                                >  SRR4302533.2579669/1‑94 (MQ=60)
                                                              CCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGG                                <  SRR4302533.3547650/94‑1 (MQ=60)
                                                               CCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGA                               <  SRR4302533.3509014/94‑1 (MQ=60)
                                                               CCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGA                               >  SRR4302533.5311722/1‑94 (MQ=60)
                                                               CCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGA                               >  SRR4302533.2424047/1‑94 (MQ=60)
                                                                CGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGAT                              <  SRR4302533.2121515/94‑1 (MQ=60)
                                                                CGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGAT                              <  SRR4302533.4215301/94‑1 (MQ=60)
                                                                 GATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATA                             >  SRR4302533.3353812/1‑94 (MQ=60)
                                                                 GATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATA                             >  SRR4302533.1579796/1‑94 (MQ=60)
                                                                  ATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATAC                            >  SRR4302533.4846729/1‑94 (MQ=60)
                                                                  ATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATAC                            <  SRR4302533.3230504/94‑1 (MQ=60)
                                                                  ATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATAC                            >  SRR4302533.2267853/1‑94 (MQ=60)
                                                                    GGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGG                          <  SRR4302533.5764836/94‑1 (MQ=60)
                                                                      CAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCT                        >  SRR4302533.2570638/1‑94 (MQ=60)
                                                                       AACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTT                       >  SRR4302533.5515429/1‑94 (MQ=60)
                                                                       AACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTT                       >  SRR4302533.747769/1‑94 (MQ=60)
                                                                          CGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTA                    >  SRR4302533.5918276/1‑94 (MQ=60)
                                                                           GTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAA                   >  SRR4302533.789017/1‑94 (MQ=60)
                                                                           GTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAA                   <  SRR4302533.2204418/94‑1 (MQ=60)
                                                                             TTTTATTTACCGAAA‑GAGCATATGACTTTTTATTTATTCACGGATGCCTGGTTTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAG                 <  SRR4302533.6343421/94‑1 (MQ=60)
                                                                              TTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGG                <  SRR4302533.2120862/94‑1 (MQ=60)
                                                                              TTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGG                <  SRR4302533.3894102/94‑1 (MQ=60)
                                                                               TTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGC               >  SRR4302533.4163256/1‑94 (MQ=60)
                                                                               TTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGC               >  SRR4302533.1327954/1‑94 (MQ=60)
                                                                                 ATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTT             >  SRR4302533.3047037/1‑94 (MQ=60)
                                                                                  TTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATTCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTA            <  SRR4302533.1280863/94‑1 (MQ=60)
                                                                                  TTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTA            <  SRR4302533.6154383/94‑1 (MQ=60)
                                                                                  TTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTA            <  SRR4302533.1248236/94‑1 (MQ=60)
                                                                                  TTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTA            >  SRR4302533.26873/1‑94 (MQ=60)
                                                                                   TTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAA           <  SRR4302533.1486731/94‑1 (MQ=60)
                                                                                    TACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAAC          <  SRR4302533.4276532/94‑1 (MQ=60)
                                                                                     ACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACC         >  SRR4302533.3096256/1‑94 (MQ=60)
                                                                                      CCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCC        <  SRR4302533.1565014/94‑1 (MQ=60)
                                                                                       CGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCC       <  SRR4302533.4242058/94‑1 (MQ=60)
                                                                                          AAAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTT     <  SRR4302533.3135750/94‑1 (MQ=60)
                                                                                          AAAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTT     >  SRR4302533.4519612/1‑94 (MQ=60)
                                                                                           AAGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTA    <  SRR4302533.5712243/94‑1 (MQ=60)
                                                                                            AGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTAT   <  SRR4302533.2042254/94‑1 (MQ=60)
                                                                                            AGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTAT   >  SRR4302533.2413372/1‑94 (MQ=60)
                                                                                            AGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTAT   >  SRR4302533.2449539/1‑94 (MQ=60)
                                                                                            AGAGCAAATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTAT   <  SRR4302533.3953696/94‑1 (MQ=60)
                                                                                             GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATC  >  SRR4302533.1365383/1‑94 (MQ=60)
                                                                                             |                                                                                             
TTATCAATACATGGCTGAAAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGCTTTTAAAGGCTTAACCCCTTATC  >  NC_000913/4573097‑4573283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑