Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,587,813	A→G	L351P (CTG→CCG)	yjiY ←	putative carbon starvation protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,587,813	0	A	G	100.0%	800.0 / NA	249	L351P (CTG→CCG)	yjiY	putative carbon starvation protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (127/122); total (127/122)

Only 100 of 258 total aligned reads displayed.

ACGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTC  >  NC_000913/4587723‑4587901

aCGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGgc                                                                                        >  1:3838987/1‑93 (MQ=255)

  gAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGgcgc                                                                                      <  1:3724823/93‑1 (MQ=255)

    aGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGt                                                                                    <  2:2478246/93‑1 (MQ=255)

     ggACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTg                                                                                   >  1:394158/1‑93 (MQ=255)

     ggACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTg                                                                                   >  1:3048854/1‑93 (MQ=255)

       aCTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGa                                                                                 <  1:401613/93‑1 (MQ=255)

         tCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAg                                                                               >  1:4866710/1‑93 (MQ=255)

           cATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGcc                                                                             >  2:3491873/1‑93 (MQ=255)

            aTCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCa                                                                            >  1:4496271/1‑93 (MQ=255)

            aTCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCa                                                                            >  2:3903213/1‑93 (MQ=255)

             tCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAg                                                                           >  2:2387088/1‑93 (MQ=255)

             tCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAg                                                                           >  2:3567729/1‑93 (MQ=255)

              cAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGa                                                                          <  2:5478905/93‑1 (MQ=255)

              cAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGa                                                                          <  1:5728115/93‑1 (MQ=255)

              cAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGa                                                                          <  1:530848/93‑1 (MQ=255)

               aGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGAt                                                                         >  1:2416799/1‑93 (MQ=255)

               aGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGAt                                                                         >  1:504114/1‑93 (MQ=255)

                gCATTGCGCCGTAGCCGATGAAACGCGCGTCTGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATa                                                                        <  2:1513930/93‑1 (MQ=255)

                gCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGaaa                                                                        >  2:4253466/1‑91 (MQ=255)

                gCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATa                                                                        >  1:413077/1‑93 (MQ=255)

                 cATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATAc                                                                       <  1:3475374/93‑1 (MQ=255)

                 cATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATAc                                                                       <  2:4447317/93‑1 (MQ=255)

                  aTTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATAcc                                                                      <  1:542277/93‑1 (MQ=255)

                   ttGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCg                                                                     >  2:5280043/1‑93 (MQ=255)

                   ttGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCg                                                                     <  2:3814113/93‑1 (MQ=255)

                      cgcCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGcac                                                                  >  2:1606743/1‑93 (MQ=255)

                       gcCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGcacc                                                                 <  2:2884656/93‑1 (MQ=255)

                       gcCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGcacc                                                                 >  2:410509/1‑93 (MQ=255)

                        ccGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGcacca                                                                <  1:1252589/93‑1 (MQ=255)

                           tAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAg                                                             >  2:124835/1‑93 (MQ=255)

                            aGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAgg                                                            <  2:5003401/93‑1 (MQ=255)

                            aGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAgg                                                            >  2:4042324/1‑93 (MQ=255)

                             gCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGc                                                           <  1:974491/93‑1 (MQ=255)

                               cGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGa                                                         >  1:1722607/1‑93 (MQ=255)

                               cGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGa                                                         <  1:5119554/93‑1 (MQ=255)

                                gATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGAt                                                        >  1:5631821/1‑93 (MQ=255)

                                 aTGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATg                                                       >  1:6280894/1‑93 (MQ=255)

                                  tGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATgg                                                      <  2:3207275/93‑1 (MQ=255)

                                  tGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGAGATgt                                                      >  1:1344791/1‑92 (MQ=255)

                                   gAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATggg                                                     >  2:1226910/1‑92 (MQ=255)

                                   gAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGt                                                     <  2:1139200/93‑1 (MQ=255)

                                   gAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGt                                                     <  1:2863958/93‑1 (MQ=255)

                                      aCGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGtgat                                                  >  2:5374319/1‑93 (MQ=255)

                                        gcgcgTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGtgatga                                                <  1:2226316/93‑1 (MQ=255)

                                        gcgcgTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGtgatga                                                <  1:3411027/93‑1 (MQ=255)

                                         cgcgTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGaa                                               <  2:5223420/93‑1 (MQ=255)

                                          gcgTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAAc                                              >  1:2184679/1‑93 (MQ=255)

                                           cgTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACa                                             <  2:4669338/93‑1 (MQ=255)

                                            gTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAg                                            >  2:232468/1‑93 (MQ=255)

                                            gTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAg                                            <  1:2510798/93‑1 (MQ=255)

                                             tCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAgg                                           >  2:4878054/1‑93 (MQ=255)

                                              cGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGa                                          >  2:2795417/1‑93 (MQ=255)

                                              cGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGa                                          >  2:6073965/1‑93 (MQ=255)

                                               ggTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGaa                                         >  2:4378467/1‑93 (MQ=255)

                                               ggTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGaa                                         >  1:4445475/1‑93 (MQ=255)

                                                gTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAAc                                        >  1:559016/1‑93 (MQ=255)

                                                 tttCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACg                                       >  1:6191022/1‑93 (MQ=255)

                                                 tttCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACg                                       <  2:3418692/93‑1 (MQ=255)

                                                 tttCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACg                                       <  2:1687227/93‑1 (MQ=255)

                                                  ttCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACgg                                      <  2:693610/93‑1 (MQ=255)

                                                   tCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACggg                                     >  1:2554456/1‑93 (MQ=255)

                                                    cATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGa                                    >  2:2544189/1‑93 (MQ=255)

                                                     aTTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGaa                                   >  1:4288564/1‑93 (MQ=255)

                                                      ttAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAAc                                  <  1:2369435/93‑1 (MQ=255)

                                                      ttAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAAc                                  >  1:1044691/1‑93 (MQ=255)

                                                        aGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACag                                <  1:1636470/93‑1 (MQ=255)

                                                         gCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACaga                               <  1:6051110/93‑1 (MQ=255)

                                                          ccAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACagag                              <  2:337843/93‑1 (MQ=255)

                                                           cagcagTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAgc                             <  1:4764647/93‑1 (MQ=255)

                                                            agcagTTTTGGCGTCGTGCCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAgcg                            <  1:322436/93‑1 (MQ=255)

                                                            agcagTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAgcg                            >  2:3713894/1‑93 (MQ=255)

                                                                 ttttGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCttt                       >  1:941907/1‑93 (MQ=255)

                                                                  tttGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTc                      <  1:1174792/93‑1 (MQ=255)

                                                                   ttGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTcc                     >  2:2712117/1‑93 (MQ=255)

                                                                    tGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCca                    <  1:3627513/93‑1 (MQ=255)

                                                                     ggCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCcac                   <  2:1838162/93‑1 (MQ=255)

                                                                      gCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCcaca                  >  2:1853869/1‑93 (MQ=255)

                                                                       cgtcgtACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAg                 <  1:5754918/93‑1 (MQ=255)

                                                                        gtcgtACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGACCGGGAACAGAGAGCCTTTCCACAGc                >  1:1569502/1‑93 (MQ=255)

                                                                        gtcgtACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGc                <  1:3106982/93‑1 (MQ=255)

                                                                        gtcgtACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGc                >  2:1398764/1‑93 (MQ=255)

                                                                        gtcgtACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGc                <  2:1312401/93‑1 (MQ=255)

                                                                         tcgtACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCg               <  1:5218691/93‑1 (MQ=255)

                                                                         tcgtACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCg               >  1:4577044/1‑93 (MQ=255)

                                                                           gtACCGGAAGAGATCGGCGCGTGGAAGGCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCggg             >  2:5716895/1‑93 (MQ=255)

                                                                           gtACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCggg             <  2:6257218/93‑1 (MQ=255)

                                                                           gtACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCggg             >  1:2828777/1‑93 (MQ=255)

                                                                           gtACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCggg             <  1:2768845/93‑1 (MQ=255)

                                                                            tACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGc            >  1:3739239/1‑93 (MQ=255)

                                                                             aCCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGcc           <  2:5555449/93‑1 (MQ=255)

                                                                              ccGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCa          <  1:775694/93‑1 (MQ=255)

                                                                               cGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAg         >  2:32644/1‑93 (MQ=255)

                                                                               cGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAg         <  2:5829896/93‑1 (MQ=255)

                                                                               cGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAg         <  2:2244553/93‑1 (MQ=255)

                                                                                 gAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGGGCCTTTCCACACGGGGCCAgac       >  2:1568680/1‑91 (MQ=21)

                                                                                    gagaTCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCg    >  2:6220898/1‑93 (MQ=255)

                                                                                    gagaTCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCg    <  1:6027000/93‑1 (MQ=255)

                                                                                     agaTCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGt   <  1:3668168/93‑1 (MQ=255)

                                                                                      gaTCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTc  >  2:5915779/1‑93 (MQ=255)

                                                                                      gaTCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTc  >  1:592473/1‑93 (MQ=255)

ACGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTC  >  NC_000913/4587723‑4587901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCACGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGT  >  NC_000913/4587721‑4587906

CCACGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGG                                                                                              >  SRR4302533.1253863/1‑94 (MQ=60)

CCACGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGG                                                                                              <  SRR4302533.2831646/94‑1 (MQ=60)

CCACGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGG                                                                                              <  SRR4302533.3814312/94‑1 (MQ=60)

CCACGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGG                                                                                              >  SRR4302533.4558649/1‑94 (MQ=60)

 CACGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGC                                                                                             >  SRR4302533.3862439/1‑94 (MQ=60)

  ACGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCG                                                                                            >  SRR4302533.1219059/1‑94 (MQ=60)

   CGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGC                                                                                           <  SRR4302533.5825635/94‑1 (MQ=60)

    GAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCG                                                                                          <  SRR4302533.3747675/94‑1 (MQ=60)

     AAGGACCCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGT                                                                                         >  SRR4302533.5807920/1‑94 (MQ=60)

      AGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTG                                                                                        >  SRR4302533.3067518/1‑94 (MQ=60)

      AGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTG                                                                                        >  SRR4302533.396549/1‑94 (MQ=60)

      AGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTG                                                                                        >  SRR4302533.6287381/1‑94 (MQ=60)

       GGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGG                                                                                       <  SRR4302533.2858049/94‑1 (MQ=60)

       GGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGG                                                                                       <  SRR4302533.4571479/94‑1 (MQ=60)

         ACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAA                                                                                     <  SRR4302533.404036/94‑1 (MQ=60)

         ACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAA                                                                                     <  SRR4302533.3418966/94‑1 (MQ=60)

          CTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAG                                                                                    <  SRR4302533.1743907/94‑1 (MQ=60)

          CTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAG                                                                                    >  SRR4302533.4896202/1‑94 (MQ=60)

          CTCCATCAGCATTGCGCCGTAGCCGATGAAAAGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAG                                                                                    >  SRR4302533.5307369/1‑94 (MQ=60)

          CTCCATCAGAATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATAAGCCAGCAGTTTTGGTGTCGTACCGGAAGAGATCGGCGCGTGGAAG                                                                                    >  SRR4302533.912869/1‑94 (MQ=60)

           TCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGC                                                                                   >  SRR4302533.3756552/1‑94 (MQ=60)

            CCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCC                                                                                  <  SRR4302533.6189953/94‑1 (MQ=60)

             CATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCA                                                                                 >  SRR4302533.4523500/1‑94 (MQ=60)

             CATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCA                                                                                 <  SRR4302533.4621436/94‑1 (MQ=60)

              ATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAG                                                                                <  SRR4302533.3176856/94‑1 (MQ=60)

              ATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAG                                                                                >  SRR4302533.5365183/1‑94 (MQ=60)

              ATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAG                                                                                >  SRR4302533.3736904/1‑94 (MQ=60)

               TCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGA                                                                               <  SRR4302533.5320307/94‑1 (MQ=60)

                CAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGAT                                                                              <  SRR4302533.3776502/94‑1 (MQ=60)

                CAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGAT                                                                              <  SRR4302533.534005/94‑1 (MQ=60)

                CAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGAT                                                                              <  SRR4302533.5762706/94‑1 (MQ=60)

                CAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGAT                                                                              >  SRR4302533.2431725/1‑94 (MQ=60)

                CAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGAT                                                                              >  SRR4302533.507106/1‑94 (MQ=60)

                CAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGAT                                                                              >  SRR4302533.404470/1‑94 (MQ=60)

                 AGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATA                                                                             >  SRR4302533.415558/1‑94 (MQ=60)

                   CATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACC                                                                           >  SRR4302533.3792341/1‑94 (MQ=60)

                   CATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACC                                                                           >  SRR4302533.5080455/1‑94 (MQ=60)

                   CATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACC                                                                           <  SRR4302533.3496819/94‑1 (MQ=60)

                    ATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCG                                                                          <  SRR4302533.2511987/94‑1 (MQ=60)

                    ATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCG                                                                          <  SRR4302533.545497/94‑1 (MQ=60)

                    ATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCG                                                                          <  SRR4302533.4992155/94‑1 (MQ=60)

                    ATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCG                                                                          >  SRR4302533.2373600/1‑94 (MQ=60)

                     TTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGC                                                                         <  SRR4302533.5716026/94‑1 (MQ=60)

                        CGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACC                                                                      >  SRR4302533.4795521/1‑94 (MQ=60)

                        CGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACC                                                                      <  SRR4302533.3651048/94‑1 (MQ=60)

                         GCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCA                                                                     >  SRR4302533.3434646/1‑94 (MQ=60)

                          CCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCAC                                                                    <  SRR4302533.1260078/94‑1 (MQ=60)

                           CGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACA                                                                   <  SRR4302533.4532914/94‑1 (MQ=60)

                           CGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACA                                                                   <  SRR4302533.2791048/94‑1 (MQ=60)

                               GCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCG                                                               <  SRR4302533.980211/94‑1 (MQ=60)

                                CCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGA                                                              >  SRR4302533.1733052/1‑94 (MQ=60)

                                 CGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGAT                                                             <  SRR4302533.5150486/94‑1 (MQ=60)

                                 CGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGAT                                                             >  SRR4302533.5665879/1‑94 (MQ=60)

                                 CGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGAT                                                             >  SRR4302533.2570814/1‑94 (MQ=60)

                                  GATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATG                                                            >  SRR4302533.6318382/1‑94 (MQ=60)

                                   ATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGAGATGT                                                           >  SRR4302533.1352883/1‑94 (MQ=60)

                                     GAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTG                                                         <  SRR4302533.3609123/94‑1 (MQ=60)

                                     GAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTG                                                         <  SRR4302533.2881573/94‑1 (MQ=60)

                                     GAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTG                                                         >  SRR4302533.3728728/1‑94 (MQ=60)

                                       AACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGAT                                                       <  SRR4302533.1331179/94‑1 (MQ=60)

                                        ACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATG                                                      >  SRR4302533.5499766/1‑94 (MQ=60)

                                          GCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAA                                                    >  SRR4302533.3386069/1‑94 (MQ=60)

                                          GCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAA                                                    <  SRR4302533.2240059/94‑1 (MQ=60)

                                          GCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAA                                                    <  SRR4302533.3432096/94‑1 (MQ=60)

                                           CGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATTGGCGCGTGGAGGCCAGATACCGCACCACAGGCGATGGTGATGAAC                                                   >  SRR4302533.5660570/1‑94 (MQ=60)

                                           CGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAAC                                                   <  SRR4302533.3629791/94‑1 (MQ=60)

                                           CGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAAC                                                   >  SRR4302533.2198146/1‑94 (MQ=60)

                                            GCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACA                                                  >  SRR4302533.4709576/1‑94 (MQ=60)

                                            GCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACA                                                  <  SRR4302533.3085575/94‑1 (MQ=60)

                                            GCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACA                                                  >  SRR4302533.4482177/1‑94 (MQ=60)

                                             CGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAG                                                 >  SRR4302533.695566/1‑94 (MQ=60)

                                              GTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGG                                                >  SRR4302533.1357758/1‑94 (MQ=60)

                                              GTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGG                                                >  SRR4302533.1542096/1‑94 (MQ=60)

                                              GTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGG                                                <  SRR4302533.2526271/94‑1 (MQ=60)

                                              GTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGG                                                >  SRR4302533.4436838/1‑94 (MQ=60)

                                               TCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGA                                               >  SRR4302533.2597463/1‑94 (MQ=60)

                                                CGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAA                                              >  SRR4302533.96614/1‑94 (MQ=60)

                                                CGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAA                                              >  SRR4302533.4472365/1‑94 (MQ=60)

                                                 GGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAAC                                             <  SRR4302533.2975360/94‑1 (MQ=60)

                                                 GGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAAC                                             >  SRR4302533.562337/1‑94 (MQ=60)

                                                 GGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAAC                                             <  SRR4302533.2391724/94‑1 (MQ=60)

                                                  GTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACG                                            >  SRR4302533.6228175/1‑94 (MQ=60)

                                                   TTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGG                                           >  SRR4302533.5051815/1‑94 (MQ=60)

                                                    TTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGG                                          <  SRR4302533.221596/94‑1 (MQ=60)

                                                    TTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGG                                          >  SRR4302533.2570171/1‑94 (MQ=60)

                                                     TCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGA                                         >  SRR4302533.5503925/1‑94 (MQ=60)

                                                      CATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAA                                        >  SRR4302533.4314354/1‑94 (MQ=60)

                                                       ATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAAC                                       <  SRR4302533.2823599/94‑1 (MQ=60)

                                                       ATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAAC                                       >  SRR4302533.1050832/1‑94 (MQ=60)

                                                        TTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACA                                      <  SRR4302533.2384094/94‑1 (MQ=60)

                                                         TAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAG                                     <  SRR4302533.3179033/94‑1 (MQ=60)

                                                          AGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGA                                    >  SRR4302533.3904439/1‑94 (MQ=60)

                                                          AGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGA                                    <  SRR4302533.1646379/94‑1 (MQ=60)

                                                          AGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGA                                    <  SRR4302533.1257162/94‑1 (MQ=60)

                                                           GCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAG                                   >  SRR4302533.5783267/1‑94 (MQ=60)

                                                           GCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAG                                   <  SRR4302533.6087765/94‑1 (MQ=60)

                                                             CAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCG                                 <  SRR4302533.4793544/94‑1 (MQ=60)

                                                             CAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCG                                 <  SRR4302533.1676636/94‑1 (MQ=60)

                                                             CAGCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCG                                 <  SRR4302533.608425/94‑1 (MQ=60)

                                                              AGCAGTTTTGGCGTCGTGCCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGC                                <  SRR4302533.324406/94‑1 (MQ=60)

                                                               GCAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCC                               >  SRR4302533.2327028/1‑94 (MQ=60)

                                                                CAGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCT                              >  SRR4302533.807638/1‑94 (MQ=60)

                                                                 AGTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTT                             >  SRR4302533.4082247/1‑94 (MQ=60)

                                                                 AGTGTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCTCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTT                             <  SRR4302533.387310/94‑1 (MQ=60)

                                                                  GTTTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTT                            >  SRR4302533.947448/1‑94 (MQ=60)

                                                                    TTTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCC                          <  SRR4302533.1181844/94‑1 (MQ=60)

                                                                     TTGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCA                         <  SRR4302533.1706892/94‑1 (MQ=60)

                                                                      TGGCGTCGTACCGGAAGAGATCGGCTCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCAC                        <  SRR4302533.5747210/94‑1 (MQ=60)

                                                                      TGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCAC                        <  SRR4302533.2974124/94‑1 (MQ=60)

                                                                      TGGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCAC                        <  SRR4302533.3649834/94‑1 (MQ=60)

                                                                       GGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACA                       >  SRR4302533.6226240/1‑94 (MQ=60)

                                                                       GGCGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACA                       <  SRR4302533.255848/94‑1 (MQ=60)

                                                                         CGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGACCGGGAACAGAGAGCCTTTCCACAGC                     >  SRR4302533.1578954/1‑94 (MQ=60)

                                                                         CGTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGC                     <  SRR4302533.5789641/94‑1 (MQ=60)

                                                                          GTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCG                    >  SRR4302533.4187065/1‑94 (MQ=60)

                                                                          GTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCG                    <  SRR4302533.3126078/94‑1 (MQ=60)

                                                                          GTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCG                    >  SRR4302533.4604783/1‑94 (MQ=60)

                                                                          GTCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCG                    <  SRR4302533.2101497/94‑1 (MQ=60)

                                                                           TCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGG                   <  SRR4302533.4317982/94‑1 (MQ=60)

                                                                           TCGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGG                   <  SRR4302533.5250102/94‑1 (MQ=60)

                                                                            CGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGG                  <  SRR4302533.1645791/94‑1 (MQ=60)

                                                                            CGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGG                  >  SRR4302533.603087/1‑94 (MQ=60)

                                                                            CGTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGG                  >  SRR4302533.2846180/1‑94 (MQ=60)

                                                                             GTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGC                 >  SRR4302533.3762173/1‑94 (MQ=60)

                                                                             GTACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGC                 <  SRR4302533.2785837/94‑1 (MQ=60)

                                                                              TACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCC                >  SRR4302533.5221509/1‑94 (MQ=60)

                                                                               ACCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCA               >  SRR4302533.2513580/1‑94 (MQ=60)

                                                                                CCGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAG              <  SRR4302533.780251/94‑1 (MQ=60)

                                                                                 CGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGT             <  SRR4302533.1073242/94‑1 (MQ=60)

                                                                                 CGGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGT             <  SRR4302533.5185484/94‑1 (MQ=60)

                                                                                  GGAAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTA            >  SRR4302533.684618/1‑94 (MQ=60)

                                                                                    AAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACC          <  SRR4302533.5991285/94‑1 (MQ=60)

                                                                                    AAGAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACC          <  SRR4302533.3991816/94‑1 (MQ=60)

                                                                                      GAGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGT        <  SRR4302533.6063523/94‑1 (MQ=60)

                                                                                       AGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTC       >  SRR4302533.595972/1‑94 (MQ=60)

                                                                                       AGATCGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTC       <  SRR4302533.3690713/94‑1 (MQ=60)

                                                                                           CGGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATG   <  SRR4302533.1363914/94‑1 (MQ=60)

                                                                                            GGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGT  <  SRR4302533.5858730/94‑1 (MQ=60)

                                                                                            GGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGT  <  SRR4302533.4092157/94‑1 (MQ=60)

CCACGAAGGACTCCATCAGCATTGCGCCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGT  >  NC_000913/4587721‑4587906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`