Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,593,336	+G	intergenic (‑23/‑208)	yjjM ← / → yjjN	hypothetical protein/putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,593,335	1	.	G	100.0%	723.0 / NA	222	intergenic (‑22/‑209)	yjjM/yjjN	hypothetical protein/putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (92/130); total (92/130)

Only 100 of 250 total aligned reads displayed.

TGCGTCAAGACCGCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑GAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATA  >  NC_000913/4593243‑4593421

tGCGTCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAt                                                                                         >  1:4100913/1‑93 (MQ=255)

tGCGTCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAt                                                                                         >  2:2268952/1‑93 (MQ=255)

 gCGTCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑g                                                                                       <  2:741198/93‑1 (MQ=255)

    tCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑ggaa                                                                                    <  1:4795259/93‑4 (MQ=255)

    tCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑ggaa                                                                                    >  2:4335750/1‑90 (MQ=255)

    tCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑ggaa                                                                                    <  1:3989046/93‑4 (MQ=255)

    tCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑ggaa                                                                                    >  1:314309/1‑90 (MQ=255)

    tCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTACGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑ggaa                                                                                    >  1:6217264/1‑90 (MQ=255)

     cAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑ggaag                                                                                   <  2:458465/93‑5 (MQ=255)

         acgccgcATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTggg                                                                                <  2:1036023/89‑1 (MQ=255)

         acgccgcATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTggg                                                                                <  2:3169039/89‑1 (MQ=255)

          cgccgcATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTgggg                                                                               >  2:5221258/4‑93 (MQ=255)

           gccgcATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGa                                                                              <  1:3833179/91‑1 (MQ=255)

              gcATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAgg                                                                           >  2:893422/1‑93 (MQ=255)

              gcATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAgg                                                                           <  1:1504151/93‑1 (MQ=255)

               cATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAggg                                                                          >  2:2207806/1‑93 (MQ=255)

               cATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAggg                                                                          <  1:685619/93‑1 (MQ=255)

                aTTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGa                                                                         <  2:334715/93‑1 (MQ=255)

                aTTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGa                                                                         <  1:1664931/93‑1 (MQ=255)

                aTTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGa                                                                         >  2:117597/1‑93 (MQ=255)

                aTTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGa                                                                         <  2:6228727/93‑1 (MQ=255)

                 ttCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCTATGGAAGATGGGAAGAGat                                                                        >  2:4212450/1‑93 (MQ=255)

                 ttCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGat                                                                        <  2:2786993/93‑1 (MQ=255)

                 ttCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGat                                                                        >  1:5680828/1‑93 (MQ=255)

                 ttCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGat                                                                        >  1:1869045/1‑93 (MQ=255)

                  tCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGata                                                                       <  2:5358059/93‑1 (MQ=255)

                     cgTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGa                                                                    >  1:3484449/1‑93 (MQ=255)

                      gTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGAc                                                                   >  1:1723708/1‑93 (MQ=255)

                      gTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGAc                                                                   >  2:5977654/1‑93 (MQ=255)

                      gTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGAc                                                                   >  2:381406/1‑93 (MQ=255)

                        aaGTGGCTGAGAATATGACGCGCTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTGTGCGATGGAAGTGGGGAAGGGATATGAccc                                                                 <  1:2551855/93‑1 (MQ=255)

                         aGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGAcccc                                                                >  2:4737573/1‑93 (MQ=255)

                             gCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCgcgc                                                            <  2:5866410/93‑1 (MQ=255)

                             gCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCgcgc                                                            <  2:3744130/93‑1 (MQ=255)

                               tGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCa                                                          >  2:139606/1‑93 (MQ=255)

                               tGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCa                                                          >  1:3650342/1‑93 (MQ=255)

                                 agaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCata                                                        <  1:4495224/93‑1 (MQ=255)

                                  gaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCatat                                                       >  1:808277/1‑93 (MQ=255)

                                   aaTATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATatc                                                      <  1:2087731/93‑1 (MQ=255)

                                    atatGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATatca                                                     >  1:444982/1‑93 (MQ=255)

                                     tatGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATatcat                                                    <  2:3557111/93‑1 (MQ=255)

                                      atGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATatcatc                                                   <  1:4253043/93‑1 (MQ=255)

                                        gACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCaa                                                 <  2:5027046/93‑1 (MQ=255)

                                         aCGCACTGTGGTGCGTCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGCCCCCGCGCCATATCATCAAt                                                <  2:5440274/93‑1 (MQ=255)

                                          cGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATg                                               <  1:9460/93‑1 (MQ=255)

                                          cGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATg                                               <  2:2637357/93‑1 (MQ=255)

                                           gCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGa                                              >  2:1563552/1‑93 (MQ=255)

                                           gCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGa                                              <  2:159402/93‑1 (MQ=255)

                                            cACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGAc                                             <  1:5411739/93‑1 (MQ=255)

                                            cACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGAc                                             >  2:1636741/1‑93 (MQ=255)

                                             aCTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGAcc                                            <  1:2685228/93‑1 (MQ=255)

                                              cTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCt                                           <  2:3389225/93‑1 (MQ=255)

                                              cTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCt                                           <  2:4913816/93‑1 (MQ=255)

                                               tgtgGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTg                                          <  1:5963379/93‑1 (MQ=255)

                                                 tggtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGt                                        <  1:1319936/93‑1 (MQ=255)

                                                    tgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTaa                                     <  1:4825269/93‑1 (MQ=255)

                                                     gCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCGGGTTAAt                                    <  2:6125702/93‑1 (MQ=255)

                                                      cGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATc                                   <  1:2981933/93‑1 (MQ=255)

                                                      cGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATc                                   <  2:1489344/93‑1 (MQ=255)

                                                       ggCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATca                                  <  2:2024353/93‑1 (MQ=255)

                                                       ggCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATca                                  >  1:5046455/1‑93 (MQ=255)

                                                         cTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATcaca                                >  1:471679/1‑93 (MQ=255)

                                                         cTGATGTTGTACATGTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATcaca                                >  2:3849499/1‑93 (MQ=255)

                                                          tGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACAt                               >  2:3518770/1‑93 (MQ=255)

                                                           gATGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACAtt                              <  2:3680147/93‑1 (MQ=255)

                                                            aTGTTGTACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATtg                             <  1:1557819/93‑1 (MQ=255)

                                                             tgttgtACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCAGGTTAATCACATtgt                            >  2:1080977/1‑93 (MQ=255)

                                                              gttgtACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATtgtg                           <  1:1023197/93‑1 (MQ=255)

                                                              gttgtACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATtgtg                           <  1:2895374/93‑1 (MQ=255)

                                                              gttgtACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATtgtg                           <  2:1468919/93‑1 (MQ=255)

                                                               ttgtACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGGTATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTgg                          >  2:4099639/1‑93 (MQ=255)

                                                               ttgtACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATtgtag                          >  1:3352291/1‑91 (MQ=255)

                                                               ttgtACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTgg                          >  1:2051685/1‑93 (MQ=255)

                                                                 gtACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCg                        >  1:2329199/1‑93 (MQ=255)

                                                                 gtACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCg                        <  2:4007046/93‑1 (MQ=255)

                                                                  tACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGt                       >  2:2746688/1‑93 (MQ=255)

                                                                  tACATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGt                       >  2:1219736/1‑93 (MQ=255)

                                                                    cATTTCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTaa                     <  1:2398684/93‑1 (MQ=255)

                                                                      tttCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGCCCTGGTT‑ATTACCTTGGGGGGTaaaat                  >  2:2135475/1‑91 (MQ=255)

                                                                      tttCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTaagt                   >  1:1984063/1‑91 (MQ=255)

                                                                      tttCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAAt                   <  1:1451159/93‑1 (MQ=255)

                                                                       ttCCGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAAtt                  <  2:4768086/93‑1 (MQ=255)

                                                                         ccGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAAtttt                >  2:1382153/1‑93 (MQ=255)

                                                                          cGCCAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTtg               <  1:3203257/93‑1 (MQ=255)

                                                                            ccAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTtgtg             >  1:990604/1‑93 (MQ=255)

                                                                            ccAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTtgtg             >  2:5581967/1‑93 (MQ=255)

                                                                             cAGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGa            >  2:574245/1‑93 (MQ=255)

                                                                              aGCGCACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGaa           <  2:2725497/93‑1 (MQ=255)

                                                                               gcgcACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAAc          <  2:3001286/93‑1 (MQ=255)

                                                                                 gcACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGa        >  2:5714033/1‑93 (MQ=255)

                                                                                 gcACTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGa        <  1:1565624/93‑1 (MQ=255)

                                                                                   aCTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACt      >  2:666909/1‑93 (MQ=255)

                                                                                   aCTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACt      >  1:5197258/1‑93 (MQ=255)

                                                                                    cTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTc     >  1:6148753/1‑93 (MQ=255)

                                                                                    cTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTc     <  2:4558732/93‑1 (MQ=255)

                                                                                    cTTTGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTc     <  2:840238/93‑1 (MQ=255)

                                                                                     tttGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCa    <  2:1865293/93‑1 (MQ=255)

                                                                                     tttGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCa    >  2:4387717/1‑93 (MQ=255)

                                                                                       tGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCata  <  2:292847/93‑1 (MQ=255)

                                                                                       tGCGATGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCata  <  1:4977867/93‑1 (MQ=255)

TGCGTCAAGACCGCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑GAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATA  >  NC_000913/4593243‑4593421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCGTCAAGACCGCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑G‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATATTTTCCTC  >  NC_000913/4593243‑4593429

TGCGTCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑G                                                                                                <  SRR4302533.5824222/94‑1 (MQ=60)

  CGTCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑G‑GA                                                                                             <  SRR4302533.6243151/94‑1 (MQ=60)

   GTCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑Ggaa                                                                                             >  SRR4302533.316230/1‑91 (MQ=60)

   GTCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTACGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑Ggaa                                                                                             >  SRR4302533.6254543/1‑91 (MQ=60)

    TCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAG                                                                                            <  SRR4302533.4013344/94‑1 (MQ=60)

    TCAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAG                                                                                            <  SRR4302533.4824308/94‑1 (MQ=60)

     CAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGT                                                                                           <  SRR4302533.1997408/94‑1 (MQ=60)

     CAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGT                                                                                           <  SRR4302533.5549116/94‑1 (MQ=60)

     CAAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGT                                                                                           >  SRR4302533.6271305/1‑94 (MQ=60)

      AAGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTG                                                                                          >  SRR4302533.4170695/1‑94 (MQ=60)

       AGACGCCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGG                                                                                         <  SRR4302533.2970016/94‑1 (MQ=60)

        gacgcCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGG                                                                                        <  SRR4302533.3405355/89‑1 (MQ=60)

        gacgcCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGG                                                                                        <  SRR4302533.4152935/89‑1 (MQ=60)

           gcCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAA                                                                                     <  SRR4302533.3856607/92‑1 (MQ=60)

             CGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCCGCGCACTTTGCGATGG‑AAGTGGGGAAGG                                                                                   >  SRR4302533.888477/1‑94 (MQ=60)

             CGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGG                                                                                   <  SRR4302533.3225930/94‑1 (MQ=60)

             CGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGG                                                                                   <  SRR4302533.5001741/94‑1 (MQ=60)

             CGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGG                                                                                   <  SRR4302533.3044061/94‑1 (MQ=60)

             CGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGG                                                                                   <  SRR4302533.2483393/94‑1 (MQ=60)

              GCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGG                                                                                  <  SRR4302533.2760848/94‑1 (MQ=60)

              GCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGG                                                                                  <  SRR4302533.1513222/94‑1 (MQ=60)

               CATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGA                                                                                 <  SRR4302533.689674/94‑1 (MQ=60)

               CATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGA                                                                                 <  SRR4302533.3633860/94‑1 (MQ=60)

                ATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGAT                                                                                <  SRR4302533.1538312/94‑1 (MQ=60)

                ATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGAT                                                                                >  SRR4302533.5715140/1‑94 (MQ=60)

                ATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGAT                                                                                >  SRR4302533.1880440/1‑94 (MQ=60)

                ATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGAT                                                                                <  SRR4302533.1674992/94‑1 (MQ=60)

                  TCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATAT                                                                              <  SRR4302533.1186266/94‑1 (MQ=60)

                  TCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATAT                                                                              <  SRR4302533.1476210/94‑1 (MQ=60)

                   CGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATG                                                                             >  SRR4302533.1546659/1‑94 (MQ=60)

                   CGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATG                                                                             <  SRR4302533.991094/94‑1 (MQ=60)

                    GCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGA                                                                            >  SRR4302533.3505938/1‑94 (MQ=60)

                     CGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGAC                                                                           >  SRR4302533.1734164/1‑94 (MQ=60)

                      GTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACC                                                                          >  SRR4302533.3444397/1‑94 (MQ=60)

                       TAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCC                                                                         >  SRR4302533.6079998/1‑94 (MQ=60)

                        AAGTGGCTGAGAATATGACGCGCTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTGTGCGATGG‑AAGTGGGGAAGGGATATGACCCC                                                                        <  SRR4302533.2567558/94‑1 (MQ=60)

                        AAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCC                                                                        <  SRR4302533.2844158/94‑1 (MQ=60)

                         AGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCG                                                                       >  SRR4302533.4174215/1‑94 (MQ=60)

                          GTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGC                                                                      <  SRR4302533.4873073/94‑1 (MQ=60)

                           TGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCG                                                                     <  SRR4302533.1908675/94‑1 (MQ=60)

                              CTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCA                                                                  >  SRR4302533.3672787/1‑94 (MQ=60)

                               TGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCAT                                                                 >  SRR4302533.3138103/1‑94 (MQ=60)

                                 AGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATAT                                                               >  SRR4302533.813027/1‑94 (MQ=60)

                                 AGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATAT                                                               <  SRR4302533.4522445/94‑1 (MQ=60)

                                  GAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATC                                                              >  SRR4302533.3889506/1‑94 (MQ=60)

                                  GAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATC                                                              <  SRR4302533.698683/94‑1 (MQ=60)

                                   AATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCA                                                             <  SRR4302533.2068771/94‑1 (MQ=60)

                                   AATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCA                                                             <  SRR4302533.2100586/94‑1 (MQ=60)

                                   AATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCA                                                             >  SRR4302533.447644/1‑94 (MQ=60)

                                    ATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCAT                                                            >  SRR4302533.3339473/1‑94 (MQ=60)

                                     TATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGGCATATCATC                                                           >  SRR4302533.2206549/1‑94 (MQ=60)

                                     TATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATC                                                           <  SRR4302533.6045879/94‑1 (MQ=60)

                                      ATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCA                                                          <  SRR4302533.4278695/94‑1 (MQ=60)

                                         ACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATG                                                       >  SRR4302533.677777/1‑94 (MQ=60)

                                         ACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATG                                                       >  SRR4302533.2383860/1‑94 (MQ=60)

                                          CGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCGATATCATCAATGC                                                      >  SRR4302533.3623334/1‑94 (MQ=60)

                                          CGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGA                                                      <  SRR4302533.9540/94‑1 (MQ=60)

                                           GCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGAC                                                     <  SRR4302533.1341924/94‑1 (MQ=60)

                                           GCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGAC                                                     <  SRR4302533.4770851/94‑1 (MQ=60)

                                            CACTGTGGTGCGTCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACC                                                    <  SRR4302533.850584/94‑1 (MQ=60)

                                            CACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACC                                                    >  SRR4302533.520990/1‑94 (MQ=60)

                                            CACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACC                                                    <  SRR4302533.5444280/94‑1 (MQ=60)

                                            CACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACC                                                    <  SRR4302533.4285069/94‑1 (MQ=60)

                                             ACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCT                                                   >  SRR4302533.1569900/1‑94 (MQ=60)

                                             ACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCT                                                   <  SRR4302533.2701683/94‑1 (MQ=60)

                                              CTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTG                                                  >  SRR4302533.4478277/1‑94 (MQ=60)

                                               TGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGG                                                 >  SRR4302533.3198825/1‑94 (MQ=60)

                                               TGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGG                                                 <  SRR4302533.5999456/94‑1 (MQ=60)

                                                GTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGT                                                <  SRR4302533.5676646/94‑1 (MQ=60)

                                                 TGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTT                                               <  SRR4302533.1327860/94‑1 (MQ=60)

                                                  GGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTA                                              <  SRR4302533.3829837/94‑1 (MQ=60)

                                                    TGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAAT                                            <  SRR4302533.4854510/94‑1 (MQ=60)

                                                      CGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCA                                          <  SRR4302533.3000173/94‑1 (MQ=60)

                                                      CGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCA                                          >  SRR4302533.5076982/1‑94 (MQ=60)

                                                      CGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCA                                          >  SRR4302533.2060790/1‑94 (MQ=60)

                                                        GCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACA                                        >  SRR4302533.474501/1‑94 (MQ=60)

                                                          TGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATT                                      <  SRR4302533.4760394/94‑1 (MQ=60)

                                                          TGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATT                                      >  SRR4302533.2471762/1‑94 (MQ=60)

                                                            ATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGT                                    <  SRR4302533.998584/94‑1 (MQ=60)

                                                            ATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGT                                    <  SRR4302533.1567199/94‑1 (MQ=60)

                                                              GTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGG                                  <  SRR4302533.1029210/94‑1 (MQ=60)

                                                              GTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGG                                  >  SRR4302533.2064345/1‑94 (MQ=60)

                                                              GTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGG                                  <  SRR4302533.2913177/94‑1 (MQ=60)

                                                              GTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGG                                  >  SRR4302533.510658/1‑94 (MQ=60)

                                                              GTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTAG                                  >  SRR4302533.3372999/1‑94 (MQ=60)

                                                               TTGTACGTTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGC                                 <  SRR4302533.1595163/94‑1 (MQ=60)

                                                                TGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCG                                <  SRR4302533.1823289/94‑1 (MQ=60)

                                                                TGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCG                                >  SRR4302533.2343620/1‑94 (MQ=60)

                                                                 GTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGT                               >  SRR4302533.454503/1‑94 (MQ=60)

                                                                 GTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGA                               >  SRR4302533.1650945/1‑94 (MQ=60)

                                                                 GTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGA                               >  SRR4302533.5075463/1‑94 (MQ=60)

                                                                    CATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAA                            <  SRR4302533.2413492/94‑1 (MQ=60)

                                                                    CATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAA                            <  SRR4302533.1716265/94‑1 (MQ=60)

                                                                    CATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAA                            >  SRR4302533.660884/1‑94 (MQ=60)

                                                                    CATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAA                            <  SRR4302533.5230221/94‑1 (MQ=60)

                                                                     ATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAGT                           >  SRR4302533.1996203/1‑94 (MQ=60)

                                                                     ATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAAT                           <  SRR4302533.408156/94‑1 (MQ=60)

                                                                      TTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATT                          <  SRR4302533.1459915/94‑1 (MQ=60)

                                                                         CCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTG                       >  SRR4302533.2676085/1‑94 (MQ=60)

                                                                         CCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTG                       <  SRR4302533.4521047/94‑1 (MQ=60)

                                                                          CGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGT                      <  SRR4302533.3222972/94‑1 (MQ=60)

                                                                           GCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTG                     >  SRR4302533.996398/1‑94 (MQ=60)

                                                                            CCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGA                    <  SRR4302533.294308/94‑1 (MQ=60)

                                                                               GCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACG                 <  SRR4302533.2125811/94‑1 (MQ=60)

                                                                                CGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGA                >  SRR4302533.3926434/1‑94 (MQ=60)

                                                                                 GCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGAC               <  SRR4302533.1575052/94‑1 (MQ=60)

                                                                                  CACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACT              >  SRR4302533.5228601/1‑94 (MQ=60)

                                                                                  CACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACT              <  SRR4302533.141898/94‑1 (MQ=60)

                                                                                  CACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACT              >  SRR4302533.4826590/1‑94 (MQ=60)

                                                                                   ACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTC             >  SRR4302533.6185767/1‑94 (MQ=60)

                                                                                    CTTTGCGATAG‑AAGTGGGGAAGAGATATGACCCCGCGCCATAGCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCA            <  SRR4302533.2986444/94‑1 (MQ=60)

                                                                                      TTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATA          <  SRR4302533.1819477/94‑1 (MQ=60)

                                                                                       TGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATAT         <  SRR4302533.5008052/94‑1 (MQ=60)

                                                                                       TGCGAT‑GTAAGTGGGGAACGGATCTGACCCCGCGCCATAGCATCAATGGCCTGGTTAATCACATTGTGGCGTAAGTTTTGTGAACGACTCATAT         <  SRR4302533.4201534/94‑1 (MQ=60)

                                                                                         CGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATATTT       >  SRR4302533.4690552/1‑94 (MQ=60)

                                                                                          GATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATATTTT      >  SRR4302533.2097225/1‑94 (MQ=60)

                                                                                           atgG‑AAGTGGGGAAGGGATATGACCCCGCGCCATTTCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATATTTTC     <  SRR4302533.2282990/91‑1 (MQ=60)

                                                                                            tgG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATATTTTCC    >  SRR4302533.364091/3‑94 (MQ=60)

                                                                                            tgG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATATTTTCC    <  SRR4302533.4142314/92‑1 (MQ=60)

                                                                                            G‑G‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATATTTTCCT   >  SRR4302533.4168754/1‑94 (MQ=60)

                                                                                            G‑G‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATATTTTCCT   >  SRR4302533.5716237/1‑94 (MQ=60)

                                                                                              G‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATATTTTCCTC  <  SRR4302533.166973/94‑1 (MQ=60)

TGCGTCAAGACCGCGCATTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑G‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATTTTGTGAACGACTCATATTTTCCTC  >  NC_000913/4593243‑4593429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`