Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,619,453	T→G	V39G (GTG→GGG)	yjjJ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,619,453	0	T	G	99.6%	729.6 / NA	228	V39G (GTG→GGG)	yjjJ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (91/136); minor base C (0/1); total (91/137)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 236 total aligned reads displayed.

TGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACG  >  NC_000913/4619363‑4619542

tGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGa                                                                                         <  1:660932/93‑1 (MQ=255)

tGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGa                                                                                         >  2:2347603/1‑93 (MQ=255)

tGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGa                                                                                         >  1:2881772/1‑93 (MQ=255)

 gCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGAt                                                                                        <  1:1133170/93‑1 (MQ=255)

 gCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGAt                                                                                        <  2:1747951/93‑1 (MQ=255)

   aaGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTc                                                                                      <  2:2740573/93‑1 (MQ=255)

   aaGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTc                                                                                      >  1:2307324/1‑93 (MQ=255)

     gggCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGc                                                                                    >  1:4167151/1‑93 (MQ=255)

      ggCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCt                                                                                   <  2:303522/93‑1 (MQ=255)

        ccGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCttt                                                                                 <  2:2562711/93‑1 (MQ=255)

        ccGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCttt                                                                                 <  2:2986393/93‑1 (MQ=255)

           cgTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGt                                                                              <  2:160952/93‑1 (MQ=255)

           cgTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGt                                                                              >  1:1837468/1‑93 (MQ=255)

            gTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTa                                                                             >  1:4185287/1‑93 (MQ=255)

             ttCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTaa                                                                            >  2:6086229/1‑93 (MQ=255)

             ttCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTaa                                                                            >  1:3704750/1‑93 (MQ=255)

              tCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTaaa                                                                           <  2:6256218/93‑1 (MQ=255)

               cTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTTGTAAAg                                                                          >  1:954174/1‑93 (MQ=255)

                tGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGc                                                                         >  2:2675699/1‑93 (MQ=255)

                 gCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTTACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCa                                                                        >  2:2842501/1‑93 (MQ=255)

                 gCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCa                                                                        <  1:1539296/93‑1 (MQ=255)

                 gCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCa                                                                        <  2:3508710/93‑1 (MQ=255)

                 gCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCa                                                                        >  2:3854635/1‑93 (MQ=255)

                  ccccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCTTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCAc                                                                       <  1:3386953/93‑1 (MQ=255)

                  ccccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCAc                                                                       >  2:3307721/1‑93 (MQ=255)

                   cccGGAATTGCGCCAGCGGCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACg                                                                      <  1:3152165/93‑1 (MQ=255)

                    ccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACgg                                                                     >  2:1491086/1‑93 (MQ=255)

                    ccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACgg                                                                     >  1:4534109/1‑93 (MQ=255)

                    ccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACgg                                                                     <  1:5998897/93‑1 (MQ=255)

                    ccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACgg                                                                     <  1:3428175/93‑1 (MQ=255)

                    ccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACgg                                                                     <  1:1507265/93‑1 (MQ=255)

                     cGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACggg                                                                    >  2:799124/1‑93 (MQ=255)

                     cGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACggg                                                                    <  2:4356392/93‑1 (MQ=255)

                        aaTTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCaa                                                                 <  1:4718468/93‑1 (MQ=255)

                         aTTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAc                                                                >  1:4346126/1‑93 (MQ=255)

                           tGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAcgc                                                              <  1:1819952/93‑1 (MQ=255)

                           tGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAcgc                                                              <  2:3407141/93‑1 (MQ=255)

                               ccAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGata                                                          <  2:5653049/93‑1 (MQ=255)

                                 aGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATg                                                        >  2:2512508/1‑93 (MQ=255)

                                 aGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATg                                                        <  2:5950385/93‑1 (MQ=255)

                                  gCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGc                                                       >  2:858423/1‑93 (MQ=255)

                                    gTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAc                                                     >  1:455334/1‑93 (MQ=255)

                                     tCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAct                                                    <  1:6175606/93‑1 (MQ=255)

                                       tGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCActgc                                                  <  2:4661558/93‑1 (MQ=255)

                                        ggCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCActgct                                                 <  1:4023107/93‑1 (MQ=255)

                                          cAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACtgctgc                                               <  1:1323954/93‑1 (MQ=255)

                                            aTCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGt                                             <  2:4582739/93‑1 (MQ=255)

                                             tcagtcagGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTc                                            >  1:5846033/1‑93 (MQ=255)

                                                gtcagGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCtt                                         <  1:4096042/93‑1 (MQ=255)

                                                 tcagGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTa                                        <  1:1276936/93‑1 (MQ=255)

                                                 tcagGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTa                                        <  2:3755247/93‑1 (MQ=255)

                                                  cagGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTAt                                       <  2:222328/93‑1 (MQ=255)

                                                   agGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATc                                      <  1:351955/93‑1 (MQ=255)

                                                   agGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATc                                      <  2:2028462/93‑1 (MQ=255)

                                                     gCGACGTTCTCACGCCTTGTTGCTAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCCCGGGCAACGCGATATGCACTGCTGCGTCCTTATcgc                                    <  2:1237723/93‑1 (MQ=255)

                                                     gCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATcgc                                    <  1:1658789/93‑1 (MQ=255)

                                                     gCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATcgc                                    <  1:1990686/93‑1 (MQ=255)

                                                     gCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATcgc                                    <  1:5657789/93‑1 (MQ=255)

                                                        aCGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGa                                 >  2:6065830/1‑93 (MQ=255)

                                                         cGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGaa                                >  1:586915/1‑93 (MQ=255)

                                                          gTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAt                               <  1:1958611/93‑1 (MQ=255)

                                                          gTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAt                               >  1:3814921/1‑93 (MQ=255)

                                                           ttCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAtt                              >  2:5348574/1‑93 (MQ=255)

                                                             ctcACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGa                            >  2:693858/1‑93 (MQ=255)

                                                             ctcACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGa                            <  2:3981603/93‑1 (MQ=255)

                                                                aCGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCg                         >  2:776119/1‑93 (MQ=255)

                                                                aCGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCg                         >  1:1427181/1‑93 (MQ=255)

                                                                aCGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCg                         <  1:4693136/93‑1 (MQ=255)

                                                                aCGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCg                         >  1:4966081/1‑93 (MQ=255)

                                                                  gCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTa                       >  1:5212138/1‑93 (MQ=255)

                                                                  gCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTa                       <  2:2084146/93‑1 (MQ=255)

                                                                   ccTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAt                      <  1:4766926/93‑1 (MQ=255)

                                                                   ccTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAt                      >  1:2081254/1‑93 (MQ=255)

                                                                   ccTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAt                      <  1:394019/93‑1 (MQ=255)

                                                                    cTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAtt                     >  2:1943390/1‑93 (MQ=255)

                                                                    cTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAtt                     >  2:513040/1‑93 (MQ=255)

                                                                    cTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAtt                     <  2:4762507/93‑1 (MQ=255)

                                                                     ttgttgCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTc                    <  2:5854204/93‑1 (MQ=255)

                                                                     ttgttgCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTc                    <  1:5469689/93‑1 (MQ=255)

                                                                      tgttgCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTcc                   <  2:3333007/93‑1 (MQ=255)

                                                                      tgttgCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTcc                   <  2:5069969/93‑1 (MQ=255)

                                                                      tgttgCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTcc                   <  2:4937350/93‑1 (MQ=255)

                                                                      tgttgCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTcc                   <  1:3599438/93‑1 (MQ=255)

                                                                       gtcgCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTccc                  <  1:291122/90‑1 (MQ=255)

                                                                           ccAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCGCGTCt              >  1:6166239/1‑93 (MQ=255)

                                                                           ccAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCt              >  1:6162556/1‑93 (MQ=255)

                                                                            cAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTg             >  2:5554589/1‑93 (MQ=255)

                                                                            cAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTg             >  1:1093799/1‑93 (MQ=255)

                                                                            cAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTg             >  1:5726042/1‑93 (MQ=255)

                                                                             agagAAGATCGGGGGATTCGCTTTGGTAAAGCACGGTCAACGCAATATGCACTGCTGCGTCCTTATCGCGTAATTGAGCGTATTCCCGTCTgg            <  2:5731552/93‑1 (MQ=255)

                                                                             agagAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTgg            >  2:1220470/1‑93 (MQ=255)

                                                                                gaagaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCgg         <  2:3249098/93‑1 (MQ=255)

                                                                                gaagaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCgg         >  2:2753061/1‑93 (MQ=255)

                                                                                gaagaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCgg         >  2:1130510/1‑93 (MQ=255)

                                                                                 aagaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCggg        <  2:1309543/93‑1 (MQ=255)

                                                                                  agaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCgggg       >  1:1046274/1‑92 (MQ=255)

                                                                                  agaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGt       <  2:4475104/93‑1 (MQ=255)

                                                                                  agaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGt       <  1:5600551/93‑1 (MQ=255)

                                                                                     tCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGa    <  1:3058091/93‑1 (MQ=255)

                                                                                       ggggGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACg  <  2:4182897/93‑1 (MQ=255)

TGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACG  >  NC_000913/4619363‑4619542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TACTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATAC  >  NC_000913/4619360‑4619546

TACTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGG                                                                                               >  SRR4302533.1292317/1‑94 (MQ=60)

TACTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGG                                                                                               >  SRR4302533.2927143/1‑94 (MQ=60)

 ACTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGG                                                                                              <  SRR4302533.2387593/94‑1 (MQ=60)

 ACTGCAAGGCCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGG                                                                                              <  SRR4302533.5088361/94‑1 (MQ=60)

  CTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGA                                                                                             >  SRR4302533.2899501/1‑94 (MQ=60)

  CTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGA                                                                                             >  SRR4302533.3503140/1‑94 (MQ=60)

   TGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGAT                                                                                            <  SRR4302533.664830/94‑1 (MQ=60)

   TGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGAT                                                                                            <  SRR4302533.399442/94‑1 (MQ=60)

    GCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATT                                                                                           <  SRR4302533.1139908/94‑1 (MQ=60)

    GCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATT                                                                                           <  SRR4302533.3421685/94‑1 (MQ=60)

     CAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTG                                                                                          >  SRR4302533.609774/1‑94 (MQ=60)

     CAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTC                                                                                          >  SRR4302533.2321618/1‑94 (MQ=60)

      AAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCG                                                                                         <  SRR4302533.197840/94‑1 (MQ=60)

      AAGGGCCGCGTGCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCG                                                                                         <  SRR4302533.1094/94‑1 (MQ=60)

       AGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGC                                                                                        >  SRR4302533.4192403/1‑94 (MQ=60)

         GGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTT                                                                                      >  SRR4302533.5618927/1‑94 (MQ=60)

            CGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGG                                                                                   <  SRR4302533.1155302/94‑1 (MQ=60)

             GCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGT                                                                                  >  SRR4302533.1848674/1‑94 (MQ=60)

              CGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTA                                                                                 >  SRR4302533.2928719/1‑94 (MQ=60)

              CGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTA                                                                                 >  SRR4302533.4210627/1‑94 (MQ=60)

               GTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAA                                                                                >  SRR4302533.3727503/1‑94 (MQ=60)

               GTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAA                                                                                <  SRR4302533.5432991/94‑1 (MQ=60)

                 TCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTTGTAAAG                                                                              >  SRR4302533.959779/1‑94 (MQ=60)

                    GCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCAC                                                                           <  SRR4302533.1548565/94‑1 (MQ=60)

                     CCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCTTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACG                                                                          <  SRR4302533.3407864/94‑1 (MQ=60)

                     CCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACG                                                                          >  SRR4302533.4632472/1‑94 (MQ=60)

                      CCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGG                                                                         >  SRR4302533.4561563/1‑94 (MQ=60)

                      CCCGGAATTGCGCCAGCGGCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGG                                                                         <  SRR4302533.3171544/94‑1 (MQ=60)

                       CCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGG                                                                        <  SRR4302533.3449357/94‑1 (MQ=60)

                       CCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGG                                                                        <  SRR4302533.1516348/94‑1 (MQ=60)

                       CCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGG                                                                        <  SRR4302533.6035231/94‑1 (MQ=60)

                        CGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGC                                                                       >  SRR4302533.3707339/1‑94 (MQ=60)

                        CGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGC                                                                       >  SRR4302533.4065650/1‑94 (MQ=60)

                         GGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCA                                                                      >  SRR4302533.5941451/1‑94 (MQ=60)

                         GGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCAAGGGCA                                                                      >  SRR4302533.3016929/1‑94 (MQ=60)

                           AATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAC                                                                    >  SRR4302533.4372325/1‑94 (MQ=60)

                           AATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAC                                                                    <  SRR4302533.1507514/94‑1 (MQ=60)

                           AATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAC                                                                    <  SRR4302533.4747082/94‑1 (MQ=60)

                           AATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAC                                                                    <  SRR4302533.4936255/94‑1 (MQ=60)

                           AATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAC                                                                    <  SRR4302533.184773/94‑1 (MQ=60)

                           AATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAC                                                                    >  SRR4302533.952939/1‑94 (MQ=60)

                           AATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAC                                                                    >  SRR4302533.477507/1‑94 (MQ=60)

                              TGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCG                                                                 <  SRR4302533.1831068/94‑1 (MQ=60)

                              TGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCG                                                                 <  SRR4302533.3034498/94‑1 (MQ=60)

                                CGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGAT                                                               <  SRR4302533.5243283/94‑1 (MQ=60)

                                  CCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATAT                                                             <  SRR4302533.2186235/94‑1 (MQ=60)

                                  CCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATAT                                                             <  SRR4302533.3812292/94‑1 (MQ=60)

                                  CCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATAT                                                             <  SRR4302533.6306430/94‑1 (MQ=60)

                                  CCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATAT                                                             <  SRR4302533.4401174/94‑1 (MQ=60)

                                  CCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATAT                                                             <  SRR4302533.1711837/94‑1 (MQ=60)

                                   CAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATG                                                            >  SRR4302533.1393635/1‑94 (MQ=60)

                                   CAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATG                                                            >  SRR4302533.5526374/1‑94 (MQ=60)

                                    AGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGC                                                           >  SRR4302533.3299276/1‑94 (MQ=60)

                                    AGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGC                                                           >  SRR4302533.1475594/1‑94 (MQ=60)

                                      CGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAC                                                         >  SRR4302533.4723130/1‑94 (MQ=60)

                                      CGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAC                                                         >  SRR4302533.458056/1‑94 (MQ=60)

                                       GTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACT                                                        >  SRR4302533.1534333/1‑94 (MQ=60)

                                       GTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACT                                                        <  SRR4302533.4160640/94‑1 (MQ=60)

                                        TCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTG                                                       <  SRR4302533.4211780/94‑1 (MQ=60)

                                        TCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTG                                                       <  SRR4302533.6212712/94‑1 (MQ=60)

                                          TGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCT                                                     <  SRR4302533.3157758/94‑1 (MQ=60)

                                          TGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCT                                                     <  SRR4302533.4568254/94‑1 (MQ=60)

                                          TGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCT                                                     <  SRR4302533.1922798/94‑1 (MQ=60)

                                           GGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTG                                                    <  SRR4302533.4047601/94‑1 (MQ=60)

                                           GGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGCGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTG                                                    <  SRR4302533.3407957/94‑1 (MQ=60)

                                             CAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCG                                                  <  SRR4302533.1331894/94‑1 (MQ=60)

                                             CAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCG                                                  <  SRR4302533.5884873/94‑1 (MQ=60)

                                               ATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTC                                                >  SRR4302533.5881376/1‑94 (MQ=60)

                                                 CAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCT                                              >  SRR4302533.570887/1‑94 (MQ=60)

                                                  AGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTT                                             <  SRR4302533.644594/94‑1 (MQ=60)

                                                   GTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTA                                            <  SRR4302533.4120978/94‑1 (MQ=60)

                                                    TCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTAT                                           <  SRR4302533.1284611/94‑1 (MQ=60)

                                                     CAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGTGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATC                                          >  SRR4302533.2422799/1‑94 (MQ=60)

                                                      AGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCG                                         <  SRR4302533.6100017/94‑1 (MQ=60)

                                                      AGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCG                                         <  SRR4302533.354102/94‑1 (MQ=60)

                                                        gtggCGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCG                                       <  SRR4302533.2007229/90‑1 (MQ=60)

                                                        GCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTCTCGCG                                       >  SRR4302533.5666208/1‑94 (MQ=60)

                                                        GCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCG                                       <  SRR4302533.2002879/94‑1 (MQ=60)

                                                        GCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCG                                       <  SRR4302533.1668823/94‑1 (MQ=60)

                                                        GCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCG                                       <  SRR4302533.5691977/94‑1 (MQ=60)

                                                           ACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAA                                    >  SRR4302533.590381/1‑94 (MQ=60)

                                                            CGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAT                                   <  SRR4302533.3883018/94‑1 (MQ=60)

                                                            CGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAT                                   <  SRR4302533.5169038/94‑1 (MQ=60)

                                                            CGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAT                                   >  SRR4302533.3838250/1‑94 (MQ=60)

                                                             GTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATT                                  <  SRR4302533.155542/94‑1 (MQ=60)

                                                             GTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATT                                  <  SRR4302533.1970566/94‑1 (MQ=60)

                                                              TTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTG                                 <  SRR4302533.1684189/94‑1 (MQ=60)

                                                                CTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAG                               >  SRR4302533.200259/1‑94 (MQ=60)

                                                                CTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAG                               <  SRR4302533.472754/94‑1 (MQ=60)

                                                                  CACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCG                             >  SRR4302533.4996186/1‑94 (MQ=60)

                                                                  CACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCG                             >  SRR4302533.1435806/1‑94 (MQ=60)

                                                                   ACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGT                            <  SRR4302533.4721578/94‑1 (MQ=60)

                                                                    CGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTA                           >  SRR4302533.4151709/1‑94 (MQ=60)

                                                                    CGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTA                           >  SRR4302533.5243526/1‑94 (MQ=60)

                                                                     GCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAT                          >  SRR4302533.2094061/1‑94 (MQ=60)

                                                                     GCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAT                          >  SRR4302533.1322731/1‑94 (MQ=60)

                                                                     GCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAT                          >  SRR4302533.3847382/1‑94 (MQ=60)

                                                                     GCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAT                          <  SRR4302533.4200334/94‑1 (MQ=60)

                                                                      CCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATT                         <  SRR4302533.4795827/94‑1 (MQ=60)

                                                                      CCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATT                         <  SRR4302533.396409/94‑1 (MQ=60)

                                                                      CCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATT                         <  SRR4302533.3691193/94‑1 (MQ=60)

                                                                       CTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTC                        >  SRR4302533.210651/1‑94 (MQ=60)

                                                                        TTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCC                       <  SRR4302533.5502654/94‑1 (MQ=60)

                                                                         TGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCC                      <  SRR4302533.3621581/94‑1 (MQ=60)

                                                                          GTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCG                     <  SRR4302533.6092293/94‑1 (MQ=60)

                                                                          GTCGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCG                     <  SRR4302533.292892/94‑1 (MQ=60)

                                                                            TGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTC                   <  SRR4302533.5796633/94‑1 (MQ=60)

                                                                             GCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCGCGTCT                  >  SRR4302533.6203300/1‑94 (MQ=60)

                                                                             GCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCT                  >  SRR4302533.6199610/1‑94 (MQ=60)

                                                                             GCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCT                  >  SRR4302533.6199611/1‑94 (MQ=60)

                                                                              CCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTG                 >  SRR4302533.5760613/1‑94 (MQ=60)

                                                                              CCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTG                 >  SRR4302533.1100272/1‑94 (MQ=60)

                                                                               CAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGG                >  SRR4302533.3578128/1‑94 (MQ=60)

                                                                                  AGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGG             >  SRR4302533.4442360/1‑94 (MQ=60)

                                                                                    AAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGT           <  SRR4302533.1139379/94‑1 (MQ=60)

                                                                                    AAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGG           >  SRR4302533.1052422/1‑94 (MQ=60)

                                                                                     AGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTG          <  SRR4302533.5634389/94‑1 (MQ=60)

                                                                                      GATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGG         >  SRR4302533.6210984/1‑94 (MQ=60)

                                                                                       ATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGA        >  SRR4302533.5878882/1‑94 (MQ=60)

                                                                                        TCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGAC       <  SRR4302533.3076856/94‑1 (MQ=60)

                                                                                          GGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGA     <  SRR4302533.1181945/94‑1 (MQ=60)

                                                                                           GGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGAT    >  SRR4302533.1572396/1‑94 (MQ=60)

                                                                                           GGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGAT    <  SRR4302533.764191/94‑1 (MQ=60)

                                                                                             GGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATAC  <  SRR4302533.383011/94‑1 (MQ=60)

TACTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATAC  >  NC_000913/4619360‑4619546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`