Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCC > NC_000913/3349170‑3349356
|
AAAGGTTGACCCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGTCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTG < SRR4302533.5689197/94‑1 (MQ=60)
AAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTG > SRR4302533.1677155/1‑94 (MQ=60)
AAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTG > SRR4302533.1561628/1‑94 (MQ=60)
AAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTG < SRR4302533.2422495/94‑1 (MQ=60)
AAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGC > SRR4302533.2418842/1‑94 (MQ=60)
AGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGCC < SRR4302533.295927/94‑1 (MQ=60)
GGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccg > SRR4302533.948545/1‑91 (MQ=60)
GGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccg > SRR4302533.509289/1‑91 (MQ=60)
GTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccgg > SRR4302533.4538911/1‑90 (MQ=60)
TGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtg < SRR4302533.1656358/94‑7 (MQ=60)
TGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtg < SRR4302533.5492554/94‑7 (MQ=60)
tatCCTTTGCCCTCTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtgg < SRR4302533.4598109/91‑8 (MQ=60)
AACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggc < SRR4302533.1047493/94‑9 (MQ=60)
AACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggc < SRR4302533.1433103/94‑9 (MQ=60)
CCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCTGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggcag < SRR4302533.2842453/94‑11 (MQ=60)
CCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCTGTGCCGGTGGCAG < SRR4302533.3423305/94‑1 (MQ=60)
CCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggcag > SRR4302533.607781/1‑84 (MQ=60)
CTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggcagg < SRR4302533.780049/94‑12 (MQ=60)
CTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggcagg < SRR4302533.3394403/94‑12 (MQ=60)
CTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggcagg < SRR4302533.5810663/94‑12 (MQ=60)
TTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggcaggt > SRR4302533.3213787/1‑82 (MQ=60)
TTGCCCTGTGCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggcaggtt < SRR4302533.3673247/94‑14 (MQ=60)
CCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTAC > SRR4302533.1760451/1‑94 (MQ=60)
CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACC > SRR4302533.865478/1‑94 (MQ=60)
CCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACC > SRR4302533.6072524/1‑94 (MQ=60)
CCTGTTCGCTGGTAACCGTAATATCGCAGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGccggtggcaggattacc > SRR4302533.279768/1‑77 (MQ=60)
CTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCG < SRR4302533.2499999/94‑1 (MQ=60)
CTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCG > SRR4302533.555669/1‑94 (MQ=60)
CTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCG > SRR4302533.4631070/1‑94 (MQ=60)
CTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCG < SRR4302533.3459807/94‑1 (MQ=60)
CTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCG < SRR4302533.216741/94‑1 (MQ=60)
TGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGC > SRR4302533.4016605/1‑94 (MQ=60)
TGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGC > SRR4302533.2246361/1‑94 (MQ=60)
GTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCC > SRR4302533.4304760/1‑94 (MQ=60)
GTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCC < SRR4302533.4552377/94‑1 (MQ=60)
TTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCA > SRR4302533.2125650/1‑94 (MQ=60)
TCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCAT < SRR4302533.1366811/94‑1 (MQ=60)
TCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCAT > SRR4302533.5620201/1‑94 (MQ=60)
CTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGAC > SRR4302533.1577958/1‑94 (MQ=60)
GTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGT > SRR4302533.3834566/1‑94 (MQ=60)
TAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTC < SRR4302533.5305428/94‑1 (MQ=60)
AACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCT > SRR4302533.294428/1‑94 (MQ=60)
AACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCT > SRR4302533.4421853/1‑94 (MQ=60)
AACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCT < SRR4302533.1868717/94‑1 (MQ=60)
ACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGTCCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTT < SRR4302533.3403604/94‑1 (MQ=60)
ACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTT < SRR4302533.2347990/94‑1 (MQ=60)
ACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTT > SRR4302533.2073228/1‑94 (MQ=60)
CCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTT < SRR4302533.231734/94‑1 (MQ=60)
CGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTC > SRR4302533.172888/1‑94 (MQ=60)
TAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCAC > SRR4302533.199538/1‑94 (MQ=60)
AATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACC > SRR4302533.5822159/1‑94 (MQ=60)
ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAATCCCGGTG‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCT < SRR4302533.6026955/94‑1 (MQ=60)
ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCT < SRR4302533.6124223/94‑1 (MQ=60)
ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCT < SRR4302533.3605048/94‑1 (MQ=60)
ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCT > SRR4302533.4562563/1‑94 (MQ=60)
ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCT < SRR4302533.1805766/94‑1 (MQ=60)
ATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCT < SRR4302533.2357243/94‑1 (MQ=60)
ATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGG < SRR4302533.1798117/94‑1 (MQ=60)
TCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGT < SRR4302533.2728201/94‑1 (MQ=60)
CGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTA > SRR4302533.3235600/1‑94 (MQ=60)
CCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAAT > SRR4302533.679561/1‑94 (MQ=60)
CCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAAT < SRR4302533.2786585/94‑1 (MQ=60)
CCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAAT < SRR4302533.3345031/94‑1 (MQ=60)
CGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATA > SRR4302533.1532794/1‑94 (MQ=60)
GCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATAC < SRR4302533.1868386/94‑1 (MQ=60)
GCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATAC > SRR4302533.2603518/1‑94 (MQ=60)
CCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACA > SRR4302533.5020375/1‑94 (MQ=60)
CCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACA < SRR4302533.4241827/94‑1 (MQ=60)
CCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACA < SRR4302533.2512763/94‑1 (MQ=60)
CCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAT < SRR4302533.840563/94‑1 (MQ=60)
CCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACAT > SRR4302533.1716501/1‑94 (MQ=60)
CATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATG > SRR4302533.3168295/1‑94 (MQ=60)
CATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATG < SRR4302533.1594377/94‑1 (MQ=60)
ATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTTACCTGGTAATACATGG > SRR4302533.5523815/1‑94 (MQ=60)
ATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG < SRR4302533.2641650/94‑1 (MQ=60)
ATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG > SRR4302533.5950196/1‑94 (MQ=60)
ATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGG < SRR4302533.4722006/94‑1 (MQ=60)
ATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCG < SRR4302533.3545805/94‑1 (MQ=60)
ATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCG > SRR4302533.5373944/1‑94 (MQ=60)
CGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TT > SRR4302533.3869973/1‑94 (MQ=60)
GCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACNNGGTAATACATGGCGNAAA‑NTT > SRR4302533.2439798/1‑94 (MQ=60)
GCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTT < SRR4302533.2754543/94‑1 (MQ=60)
CCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTT > SRR4302533.4697666/1‑94 (MQ=60)
CAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTA > SRR4302533.5335149/1‑94 (MQ=60)
CAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTA > SRR4302533.2151848/1‑94 (MQ=60)
ACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCC < SRR4302533.3818838/94‑1 (MQ=60)
CGACGAGAAGCGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCA < SRR4302533.3906778/94‑1 (MQ=60)
CGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCA < SRR4302533.3980049/94‑1 (MQ=60)
CGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCA < SRR4302533.1418602/94‑1 (MQ=60)
CGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCA < SRR4302533.2928535/94‑1 (MQ=60)
CGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCA > SRR4302533.1788158/1‑94 (MQ=60)
GACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAG > SRR4302533.830932/1‑94 (MQ=60)
CGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCT < SRR4302533.312457/94‑1 (MQ=60)
CGAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGAGAAAA‑TTTTATCCAGCT < SRR4302533.2686565/94‑1 (MQ=60)
GAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTC > SRR4302533.5241777/1‑94 (MQ=60)
GAGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTC > SRR4302533.48754/1‑94 (MQ=60)
AGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCA > SRR4302533.702307/1‑94 (MQ=60)
AGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCA > SRR4302533.6171749/1‑94 (MQ=60)
AGAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCA < SRR4302533.4801709/94‑1 (MQ=60)
GAAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCAT < SRR4302533.3549176/94‑1 (MQ=60)
AAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATC < SRR4302533.4888177/94‑1 (MQ=60)
AAACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATC > SRR4302533.3486234/1‑94 (MQ=60)
AACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCC < SRR4302533.876144/94‑1 (MQ=60)
AACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCC < SRR4302533.529787/94‑1 (MQ=60)
AACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCC < SRR4302533.6297994/94‑1 (MQ=60)
AACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCC < SRR4302533.3902298/94‑1 (MQ=60)
AACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCC < SRR4302533.791404/94‑1 (MQ=60)
AACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGCCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCC > SRR4302533.3911438/1‑94 (MQ=60)
ACGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCT < SRR4302533.1137995/94‑1 (MQ=60)
CGGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTG > SRR4302533.3559731/1‑94 (MQ=60)
GGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGC > SRR4302533.2228120/1‑94 (MQ=60)
GGCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGC > SRR4302533.3086918/1‑94 (MQ=60)
GCCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCG > SRR4302533.4682207/1‑94 (MQ=60)
CCAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGG < SRR4302533.5672639/94‑1 (MQ=60)
CAGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGA < SRR4302533.718420/94‑1 (MQ=60)
AGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAA < SRR4302533.915994/94‑1 (MQ=60)
AGACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAA > SRR4302533.204081/1‑94 (MQ=60)
GACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAAT < SRR4302533.5268601/94‑1 (MQ=60)
GACCAA‑‑‑‑‑‑TACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAAT > SRR4302533.3529736/1‑94 (MQ=60)
accaataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTTACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATG < SRR4302533.876443/81‑1 (MQ=60)
accaataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTTATCCAGCTCATCCTGCGGAAT < SRR4302533.6236655/81‑1 (MQ=60)
accaataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATG < SRR4302533.1126837/81‑1 (MQ=60)
ccaataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGC < SRR4302533.209496/82‑1 (MQ=60)
ccaataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGC > SRR4302533.2307482/13‑94 (MQ=60)
aataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCG < SRR4302533.4211534/84‑1 (MQ=60)
ataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGA > SRR4302533.500325/10‑94 (MQ=60)
ataccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGA > SRR4302533.2104364/10‑94 (MQ=60)
taccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGAT < SRR4302533.3942327/86‑1 (MQ=60)
taccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGAT < SRR4302533.3200858/86‑1 (MQ=60)
TG‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGA > SRR4302533.2959969/1‑94 (MQ=60)
TG‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGA < SRR4302533.4437568/94‑1 (MQ=60)
G‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAG < SRR4302533.880373/94‑1 (MQ=60)
G‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAG < SRR4302533.797968/94‑1 (MQ=60)
G‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAG < SRR4302533.5428354/94‑1 (MQ=60)
ccggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATAC < SRR4302533.2041074/88‑1 (MQ=60)
ggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCA < SRR4302533.4944676/90‑1 (MQ=60)
ggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCA < SRR4302533.5713055/90‑1 (MQ=60)
ggtgCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCA > SRR4302533.328116/5‑94 (MQ=60)
CGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTC > SRR4302533.5781088/1‑94 (MQ=60)
CGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTC < SRR4302533.183432/94‑1 (MQ=60)
CGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTC > SRR4302533.5597330/1‑94 (MQ=60)
CGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTC < SRR4302533.79161/94‑1 (MQ=60)
CGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCAATACCAGAGTC < SRR4302533.5605421/94‑1 (MQ=60)
GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCT < SRR4302533.3146761/94‑1 (MQ=60)
GGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCT > SRR4302533.3381500/1‑94 (MQ=60)
GTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTT < SRR4302533.2394549/94‑1 (MQ=60)
GGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCC < SRR4302533.1623281/94‑1 (MQ=60)
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AAAGGTTGAACCTTTGCCCTGTTCGCTGGTAACCGTAATATCGCCGCCCATATTTTTCGCCAGACGACGAGAAACGGCCAGACCAA‑‑‑‑‑‑TA‑‑‑‑‑‑CCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAA‑TTTTATCCAGCTCATCCTGCGGAATGCCGATACCAGAGTCTTCC > NC_000913/3349170‑3349356
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
