Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,395,276 T→C M59V (ATG→GTG)  cafA ← CafA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,395,2760TC99.4% 1684.6 / ‑4.7 490M59V (ATG→GTG) cafACafA
Reads supporting (aligned to +/- strand):  ref base T (2/1);  new base C (278/209);  total (280/210)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 511 total aligned reads displayed.

TCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTCCTGCAGAAT  >  NC_000913/3395185‑3395366
                                                                                           |                                                                                          
tcACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCacac                                                                                          >  2:9174946/1‑94 (MQ=255)
 cACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCTAATATCTACAAAAGCCGCCTGCACAcc                                                                                         <  1:6803041/94‑1 (MQ=255)
  ccccGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACAccc                                                                                        <  1:6665893/93‑1 (MQ=255)
  aCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACAccc                                                                                        >  1:9325977/1‑94 (MQ=255)
  aCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACAccc                                                                                        >  1:1072860/1‑94 (MQ=255)
   cccGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCg                                                                                       >  1:3286098/1‑94 (MQ=255)
   cccGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCg                                                                                       >  2:4695053/1‑94 (MQ=255)
   cccGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCg                                                                                       <  2:3964677/94‑1 (MQ=255)
     cGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGa                                                                                     <  2:7842627/94‑1 (MQ=255)
      gCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGaa                                                                                    <  2:3010924/94‑1 (MQ=255)
      gCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGaa                                                                                    <  1:7048079/94‑1 (MQ=255)
       ccACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAg                                                                                   >  1:9549630/1‑94 (MQ=255)
          cacaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTac                                                                                >  1:2479592/1‑94 (MQ=255)
            caTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTacac                                                                              >  1:4623473/1‑94 (MQ=255)
                cGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACt                                                                          <  1:2650351/94‑1 (MQ=255)
                 ggTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACtt                                                                         <  2:6815790/94‑1 (MQ=255)
                 ggTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACtt                                                                         >  1:5772233/1‑94 (MQ=255)
                  gtgtGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTa                                                                        >  1:604745/1‑94 (MQ=255)
                  gtgtGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTAT‑CAGCCCAATATCTTCAAAAGCCGCCTGCACACCCGGAAGGACACGACTTac                                                                       >  2:8790559/1‑94 (MQ=255)
                    gtgCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTaca                                                                      <  1:4009111/94‑1 (MQ=255)
                      gCGGCATCATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACg                                                                    <  2:3642514/94‑1 (MQ=255)
                        ggCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGAc                                                                  >  2:1420201/1‑94 (MQ=255)
                        ggCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGAc                                                                  >  2:4105941/1‑94 (MQ=255)
                          cATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCCCACCCGGAAGTACACGACTTACACGAccc                                                                >  2:1678210/1‑94 (MQ=255)
                           atgatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCt                                                               <  1:7319488/94‑1 (MQ=255)
                           atgatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCt                                                               >  2:10524258/1‑94 (MQ=255)
                           atgatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCt                                                               >  1:8915073/1‑94 (MQ=255)
                           atgatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCt                                                               >  2:7304438/1‑94 (MQ=255)
                            tgatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCtt                                                              <  1:4486205/94‑1 (MQ=255)
                             gatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTg                                                             <  1:3203178/94‑1 (MQ=255)
                             gatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTg                                                             <  2:3840795/94‑1 (MQ=255)
                                gTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAg                                                          <  2:9323379/94‑1 (MQ=255)
                                 tCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGa                                                         <  2:2163588/94‑1 (MQ=255)
                                  cGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGat                                                        <  1:1557113/94‑1 (MQ=255)
                                     aTGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATAtt                                                     >  1:7107775/1‑94 (MQ=255)
                                     aTGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATAtt                                                     >  1:9911265/1‑94 (MQ=255)
                                      tGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCGTGTAGATATTg                                                    <  1:5046040/94‑1 (MQ=255)
                                       gCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGc                                                   <  2:5415701/94‑1 (MQ=255)
                                        cATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGcc                                                  >  1:84455/1‑94 (MQ=255)
                                         aTGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCct                                                 >  2:7669499/1‑94 (MQ=255)
                                          tGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCcta                                                <  1:8067340/94‑1 (MQ=255)
                                          tGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCcta                                                >  2:5336238/1‑94 (MQ=255)
                                          tGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCcta                                                >  2:864143/1‑94 (MQ=255)
                                            aagaaACTCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCcttct                                              >  1:5628482/1‑94 (MQ=255)
                                             agaaACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCctacta                                             <  2:9561933/94‑1 (MQ=255)
                                              gaaACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTAt                                            <  1:9766650/94‑1 (MQ=255)
                                               aaaCGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTAtt                                           <  2:4877461/94‑1 (MQ=255)
                                               aaaCGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTAtt                                           >  1:5178727/1‑94 (MQ=255)
                                                aaCGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTc                                          <  1:299337/94‑1 (MQ=255)
                                                  cgcgGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCcg                                        <  1:7666564/94‑1 (MQ=255)
                                                   gcgGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCcgc                                       <  1:10012496/94‑1 (MQ=255)
                                                    cgGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCcgcg                                      <  1:4893436/94‑1 (MQ=255)
                                                    cgGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCcgcg                                      >  2:6992001/1‑94 (MQ=255)
                                                     ggCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGt                                     >  1:10171040/1‑94 (MQ=255)
                                                     ggCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGt                                     >  2:6911866/1‑94 (MQ=255)
                                                     ggCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGt                                     >  1:1899791/1‑94 (MQ=255)
                                                     ggCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGt                                     >  1:2082597/1‑94 (MQ=255)
                                                     ggCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGt                                     >  1:5531093/1‑94 (MQ=255)
                                                      gCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTc                                    <  2:9770275/94‑1 (MQ=255)
                                                      gCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTc                                    <  1:8568295/94‑1 (MQ=255)
                                                      gCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTc                                    <  1:3590703/94‑1 (MQ=255)
                                                      gCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTc                                    >  2:4265290/1‑94 (MQ=255)
                                                         ttATCCAGCCCAGTATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTcgcg                                 >  1:10447165/1‑94 (MQ=255)
                                                         ttATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTcgcg                                 >  2:5858444/1‑94 (MQ=255)
                                                         ttATCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTcgcg                                 >  2:10369462/1‑94 (MQ=255)
                                                           aTCCAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGcc                               >  1:10309268/1‑94 (MQ=255)
                                                             ccAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTc                             >  2:5008025/1‑94 (MQ=255)
                                                             ccAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTc                             <  2:621911/94‑1 (MQ=255)
                                                             ccAGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTc                             >  2:1951763/1‑94 (MQ=255)
                                                               aGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCAc                           <  2:6672214/94‑1 (MQ=255)
                                                               aGCCCAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCAc                           >  2:3344898/1‑94 (MQ=255)
                                                               aGCCCAAGATCTCCAAATGCCGCCTGCCCCCCCGGAAGTACGCGTCTTACACGACCTTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCAc                           <  1:1752028/94‑1 (MQ=255)
                                                                 cccAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGt                         >  2:7454237/1‑94 (MQ=255)
                                                                  ccAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGtt                        >  2:348484/1‑94 (MQ=255)
                                                                   cAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTc                       <  2:1594316/94‑1 (MQ=255)
                                                                   cAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTc                       >  1:7741821/1‑94 (MQ=255)
                                                                   cAATATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTc                       >  1:4134765/1‑94 (MQ=255)
                                                                    aaTATCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCa                      >  1:914668/1‑94 (MQ=255)
                                                                     atatCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCaa                     <  1:10548909/94‑1 (MQ=255)
                                                                      tatCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAat                    >  1:336236/1‑94 (MQ=255)
                                                                      tatCTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAat                    >  1:6455559/1‑94 (MQ=255)
                                                                         cTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATg                 <  2:8270486/94‑1 (MQ=255)
                                                                         cTACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATg                 >  1:5324882/1‑94 (MQ=255)
                                                                          tACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGa                >  2:1189898/1‑94 (MQ=255)
                                                                          tACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGa                <  2:1084156/94‑1 (MQ=255)
                                                                          tACAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGa                >  1:5927258/1‑94 (MQ=255)
                                                                           aCAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGaa               <  1:2757327/94‑1 (MQ=255)
                                                                            cAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAAt              <  1:8262522/94‑1 (MQ=255)
                                                                            cAAAAGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAAt              <  1:755893/94‑1 (MQ=255)
                                                                             aaaaGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAAtt             <  2:5651863/94‑1 (MQ=255)
                                                                               aaGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTc           >  2:6040562/1‑94 (MQ=255)
                                                                               aaGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTc           >  2:2432712/1‑94 (MQ=255)
                                                                                aGCCGCCTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTcc          <  2:3114602/94‑1 (MQ=255)
                                                                                    gccTGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTCCTGCa      <  1:7857968/94‑1 (MQ=255)
                                                                                     gcTGCATACCCGGAAGTACACCACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTCCTGCAg     <  2:6322061/93‑1 (MQ=255)
                                                                                       tGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTCCTGCAGaa   >  2:2671040/1‑94 (MQ=255)
                                                                                       tGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTCCTGCAGaa   >  1:6234396/1‑94 (MQ=255)
                                                                                       tGCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTCCTGCAGaa   >  2:1031633/1‑94 (MQ=255)
                                                                                        gCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTCCTGCAGAAt  <  1:1413628/94‑1 (MQ=255)
                                                                                        gCACACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTCCTGCAGAAt  <  1:6535001/94‑1 (MQ=255)
                                                                                           |                                                                                          
TCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACGTTCAATATGAATTTCCTGCAGAAT  >  NC_000913/3395185‑3395366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 296 total aligned reads displayed.
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC  >  NC_000913/3418747‑3418933
                                                                                               |                                                                                              
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG                                                                                                <  SRR4302545.6391968/94‑1 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG                                                                                                >  SRR4302545.6347029/1‑94 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG                                                                                                <  SRR4302545.1937436/94‑1 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG                                                                                                <  SRR4302545.173076/94‑1 (MQ=60)
 TCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG‑G                                                                                              <  SRR4302545.4135396/94‑1 (MQ=60)
 TCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG‑G                                                                                              <  SRR4302545.8526360/94‑1 (MQ=60)
 TCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG‑G                                                                                              <  SRR4302545.3711672/94‑1 (MQ=60)
   TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GGgca                                                                                             <  SRR4302545.3046896/94‑4 (MQ=60)
   TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GGgca                                                                                             <  SRR4302545.3452982/94‑4 (MQ=60)
   TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GGgca                                                                                             <  SRR4302545.9445860/94‑4 (MQ=60)
   TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GGgca                                                                                             <  SRR4302545.5029755/94‑4 (MQ=60)
    CAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAA                                                                                            >  SRR4302545.4852368/1‑94 (MQ=60)
    CAACATCGGCAAAACCTCCTCGCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAA                                                                                            <  SRR4302545.4060033/94‑1 (MQ=60)
    CAACATCGCCAAAAACGCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAA                                                                                            <  SRR4302545.5801127/94‑1 (MQ=60)
     AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAG                                                                                           >  SRR4302545.6445028/1‑94 (MQ=60)
      ACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGTACCGTGCTGAATCAGACGG‑GG‑CAAGC                                                                                          >  SRR4302545.6955861/1‑94 (MQ=60)
      ACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGC                                                                                          <  SRR4302545.6705184/94‑1 (MQ=60)
      ACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGC                                                                                          <  SRR4302545.6004672/94‑1 (MQ=60)
       CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCC                                                                                         <  SRR4302545.1025800/94‑1 (MQ=60)
       CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GGgcaagac                                                                                         >  SRR4302545.5199740/1‑87 (MQ=60)
        ATCGTCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCA                                                                                        <  SRR4302545.6784723/94‑1 (MQ=60)
        ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCA                                                                                        >  SRR4302545.5612708/1‑94 (MQ=60)
        ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCA                                                                                        >  SRR4302545.791476/1‑94 (MQ=60)
         TCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCAT                                                                                       <  SRR4302545.5597873/94‑1 (MQ=60)
          CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATTGCTTCGCTGTTTGCAGGCACCGTGCTGAATCCGAC‑GAGG‑CTAGCCATC                                                                                      >  SRR4302545.801988/1‑94 (MQ=60)
          CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATC                                                                                      <  SRR4302545.1802765/94‑1 (MQ=60)
          CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATC                                                                                      <  SRR4302545.1097910/94‑1 (MQ=60)
          CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATC                                                                                      <  SRR4302545.625901/94‑1 (MQ=60)
          CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATC                                                                                      <  SRR4302545.6240351/94‑1 (MQ=60)
          CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGACATC                                                                                      >  SRR4302545.439402/1‑94 (MQ=60)
           GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCG                                                                                     >  SRR4302545.9204490/1‑94 (MQ=60)
           GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCG                                                                                     >  SRR4302545.8250075/1‑94 (MQ=60)
            TCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGA                                                                                    >  SRR4302545.3873091/1‑94 (MQ=60)
             CAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAG                                                                                   >  SRR4302545.8757993/1‑94 (MQ=60)
             CAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAG                                                                                   <  SRR4302545.1318455/94‑1 (MQ=60)
               AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGAC                                                                                 >  SRR4302545.10006968/1‑94 (MQ=60)
               AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGAC                                                                                 >  SRR4302545.10447278/1‑94 (MQ=60)
               AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGAC                                                                                 <  SRR4302545.2963197/94‑1 (MQ=60)
                AAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACG                                                                                >  SRR4302545.4228126/1‑94 (MQ=60)
                 AACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGA                                                                               >  SRR4302545.1399709/1‑94 (MQ=60)
                 AACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GGgaaaggcatcgacacga                                                                               >  SRR4302545.4361237/1‑77 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGTTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATA                                                                             <  SRR4302545.7853412/94‑1 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATA                                                                             <  SRR4302545.8096771/94‑1 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATA                                                                             >  SRR4302545.4316069/1‑94 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATA                                                                             <  SRR4302545.269274/94‑1 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATA                                                                             <  SRR4302545.8096770/94‑1 (MQ=60)
                   CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATA                                                                             <  SRR4302545.7649466/94‑1 (MQ=60)
                    TCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAG                                                                            >  SRR4302545.1989480/1‑94 (MQ=60)
                    TCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAG                                                                            <  SRR4302545.5025038/94‑1 (MQ=60)
                    CCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAG                                                                            <  SRR4302545.5025039/94‑1 (MQ=60)
                     CCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGC                                                                           >  SRR4302545.4596770/1‑94 (MQ=60)
                       TCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCA                                                                         <  SRR4302545.4759754/94‑1 (MQ=60)
                       TCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCA                                                                         >  SRR4302545.4357757/1‑94 (MQ=60)
                       TCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCA                                                                         >  SRR4302545.2469400/1‑94 (MQ=60)
                        tgtttgccgccatgATTGGCTATCCCGATATGGTTTCGCTGTTCGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCAGCGAGACAATAGCCAT                                                                        <  SRR4302545.7243269/80‑1 (MQ=60)
                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCAT                                                                        <  SRR4302545.1035152/94‑1 (MQ=60)
                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCAT                                                                        >  SRR4302545.1346461/1‑94 (MQ=60)
                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCAT                                                                        >  SRR4302545.2487512/1‑94 (MQ=60)
                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCAT                                                                        <  SRR4302545.3231634/94‑1 (MQ=60)
                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCAT                                                                        <  SRR4302545.1976910/94‑1 (MQ=60)
                        CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCAT                                                                        >  SRR4302545.2174604/1‑94 (MQ=60)
                         TCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATG                                                                       <  SRR4302545.10198004/94‑1 (MQ=60)
                           TTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGAC                                                                     <  SRR4302545.6090801/94‑1 (MQ=60)
                            TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACC                                                                    >  SRR4302545.5764544/1‑94 (MQ=60)
                            TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACC                                                                    >  SRR4302545.329825/1‑94 (MQ=60)
                            TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACC                                                                    <  SRR4302545.9868086/94‑1 (MQ=60)
                             GCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCA                                                                   >  SRR4302545.1801245/1‑94 (MQ=60)
                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCAT                                                                  <  SRR4302545.8806985/94‑1 (MQ=60)
                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCAT                                                                  <  SRR4302545.2776448/94‑1 (MQ=60)
                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCAT                                                                  >  SRR4302545.9566833/1‑94 (MQ=60)
                              CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCAT                                                                  <  SRR4302545.1001216/94‑1 (MQ=60)
                               CGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATG                                                                 >  SRR4302545.9051122/1‑94 (MQ=60)
                               CGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATG                                                                 >  SRR4302545.5465871/1‑94 (MQ=60)
                                GCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGT                                                                >  SRR4302545.2356882/1‑94 (MQ=60)
                                GCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGT                                                                >  SRR4302545.7806954/1‑94 (MQ=60)
                                GCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGAAGATAGCCATGACCATGT                                                                >  SRR4302545.6038811/1‑94 (MQ=60)
                                 CCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTC                                                               <  SRR4302545.1161491/94‑1 (MQ=60)
                                 CCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTC                                                               <  SRR4302545.7097850/94‑1 (MQ=60)
                                  CGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCG                                                              >  SRR4302545.9200091/1‑94 (MQ=60)
                                  CGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCG                                                              <  SRR4302545.527548/94‑1 (MQ=60)
                                  CGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCG                                                              <  SRR4302545.4592103/94‑1 (MQ=60)
                                   GCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGG                                                             >  SRR4302545.1491610/1‑94 (MQ=60)
                                   GCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGG                                                             >  SRR4302545.7871063/1‑94 (MQ=60)
                                   GCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGG                                                             >  SRR4302545.2892235/1‑94 (MQ=60)
                                    CTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGT                                                            <  SRR4302545.4637628/94‑1 (MQ=60)
                                    CTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGT                                                            >  SRR4302545.4885444/1‑94 (MQ=60)
                                    CTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGG                                                            >  SRR4302545.4275444/1‑94 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTC                                                           >  SRR4302545.8152595/1‑94 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GGgggaaccatccagaccagaggcaataacatgttgcgt                                                           >  SRR4302545.7594124/1‑57 (MQ=60)
                                     TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGGGCTAAATCAGACGG‑GG‑CAACCCATCCAGACGATAGCGAGGACCATCTCGGTA                                                           >  SRR4302545.5927187/1‑94 (MQ=55)
                                      ATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCT                                                          <  SRR4302545.4147868/94‑1 (MQ=60)
                                      ATTGGCTATCCCGATATGGTTTCGCGGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGGCGGTCT                                                          >  SRR4302545.9388247/1‑94 (MQ=60)
                                       TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTA                                                         <  SRR4302545.842450/94‑1 (MQ=60)
                                        TGGCTATCCCGATATGTTTTCGCTGTTTGCGGGCACCGTGCTGAATCAGAC‑GTGG‑GAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTAT                                                        <  SRR4302545.7433875/94‑1 (MQ=60)
                                        TGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTAT                                                        >  SRR4302545.432245/1‑94 (MQ=60)
                                        TGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTAT                                                        <  SRR4302545.7433874/94‑1 (MQ=60)
                                         ggccatcaccatgtgtTTTCGTTGTTTGCCGCCCCCGTGCTGAATCAGCCGG‑GG‑CAAGCCATCGAGACGATAGCCATAACCATACCGGTCTATC                                                       <  SRR4302545.1515858/78‑1 (MQ=29)
                                         GGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATC                                                       <  SRR4302545.2705739/94‑1 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                      >  SRR4302545.5250584/1‑94 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                      <  SRR4302545.2878918/94‑1 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                      <  SRR4302545.2242849/94‑1 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                      <  SRR4302545.947539/94‑1 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                      <  SRR4302545.10878070/94‑1 (MQ=60)
                                          GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT                                                      <  SRR4302545.10878066/94‑1 (MQ=60)
                                           CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTG                                                     <  SRR4302545.8500763/94‑1 (MQ=60)
                                           CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTG                                                     >  SRR4302545.9074588/1‑94 (MQ=60)
                                               CCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGCTTA                                                 >  SRR4302545.3044674/1‑94 (MQ=60)
                                               CCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTA                                                 <  SRR4302545.9083452/94‑1 (MQ=60)
                                                  GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA                                              >  SRR4302545.2124269/1‑94 (MQ=60)
                                                   ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                             >  SRR4302545.5851248/1‑94 (MQ=60)
                                                   ATATGGTTTCGCTGTTTGACGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG                                             >  SRR4302545.478567/1‑94 (MQ=60)
                                                    TATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGC                                            >  SRR4302545.6606020/1‑94 (MQ=60)
                                                    TATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGC                                            >  SRR4302545.6606021/1‑94 (MQ=60)
                                                     ATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCC                                           >  SRR4302545.6533186/1‑94 (MQ=60)
                                                     ATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCC                                           >  SRR4302545.6533187/1‑94 (MQ=60)
                                                       GGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTG                                         >  SRR4302545.2872682/1‑94 (MQ=60)
                                                        GTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATTTCGGTCTATATGATTATCAGCCTGA                                        >  SRR4302545.1553627/1‑94 (MQ=60)
                                                        GTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGA                                        >  SRR4302545.369826/1‑94 (MQ=60)
                                                        GTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGA                                        >  SRR4302545.6187653/1‑94 (MQ=60)
                                                          TTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACT                                      <  SRR4302545.5446387/94‑1 (MQ=60)
                                                          TTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACT                                      >  SRR4302545.504865/1‑94 (MQ=60)
                                                          TTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCACGTCGGTCTATCTGATTATCAGCCTGACT                                      >  SRR4302545.10899596/1‑94 (MQ=60)
                                                           TCGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATTAGCCTGACTA                                     >  SRR4302545.9760597/1‑94 (MQ=60)
                                                            CGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAT                                    >  SRR4302545.4655480/1‑94 (MQ=60)
                                                            CGCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGACTATCTGATTATCAGCCTGACTAT                                    >  SRR4302545.10577920/1‑94 (MQ=60)
                                                            CGCTGTTTGCCGGAACCGTGCTGAATCAGAC‑G‑GGACAAGCCACCGAGACGATAGCCATGACCATGTCGGTCTGTCTGATTATAAGCCTGACTAT                                    >  SRR4302545.4043783/1‑94 (MQ=60)
                                                             GCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATC                                   >  SRR4302545.6794311/1‑94 (MQ=60)
                                                             GCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATC                                   >  SRR4302545.5879201/1‑94 (MQ=60)
                                                             GCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATC                                   <  SRR4302545.8116971/94‑1 (MQ=60)
                                                             GCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATC                                   >  SRR4302545.1692145/1‑94 (MQ=60)
                                                             GCTGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATC                                   <  SRR4302545.10810459/94‑1 (MQ=60)
                                                               TGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC                                 <  SRR4302545.1079292/94‑1 (MQ=60)
                                                               TGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC                                 <  SRR4302545.2825143/94‑1 (MQ=60)
                                                               TGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC                                 >  SRR4302545.133038/1‑94 (MQ=60)
                                                               TGTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC                                 <  SRR4302545.4933221/94‑1 (MQ=60)
                                                                GTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                                >  SRR4302545.6210190/1‑94 (MQ=60)
                                                                GTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                                >  SRR4302545.7392315/1‑94 (MQ=60)
                                                                GTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                                <  SRR4302545.1216896/94‑1 (MQ=60)
                                                                GTTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCA                                <  SRR4302545.9858514/94‑1 (MQ=60)
                                                                GTTCGCGGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCG                                <  SRR4302545.922303/94‑1 (MQ=60)
                                                                 TTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGC                               >  SRR4302545.7253120/1‑94 (MQ=60)
                                                                 TTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGC                               <  SRR4302545.3244951/94‑1 (MQ=60)
                                                                 TTTGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACAATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGC                               <  SRR4302545.5573294/94‑1 (MQ=60)
                                                                   TGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTG                             >  SRR4302545.6692548/1‑94 (MQ=60)
                                                                   TGCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTG                             <  SRR4302545.1618431/94‑1 (MQ=60)
                                                                    GCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGC                            >  SRR4302545.4616843/1‑94 (MQ=60)
                                                                    GCCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGC                            >  SRR4302545.9026206/1‑94 (MQ=60)
                                                                     CCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT                           >  SRR4302545.7932815/1‑94 (MQ=60)
                                                                     CCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT                           <  SRR4302545.3634447/94‑1 (MQ=60)
                                                                     CCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT                           >  SRR4302545.10524089/1‑94 (MQ=60)
                                                                     CCGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCAATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT                           <  SRR4302545.8596814/94‑1 (MQ=60)
                                                                      CTGCACCGGGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATTACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG                          <  SRR4302545.9525977/94‑1 (MQ=60)
                                                                      CGGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG                          <  SRR4302545.3186801/94‑1 (MQ=60)
                                                                      CGGCACCGGGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG                          <  SRR4302545.5286079/94‑1 (MQ=60)
                                                                      CGGAACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG                          <  SRR4302545.1050636/94‑1 (MQ=60)
                                                                       GGCACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGA                         >  SRR4302545.10473347/1‑94 (MQ=60)
                                                                         CACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG                       <  SRR4302545.6403156/94‑1 (MQ=60)
                                                                         CACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG                       >  SRR4302545.3206186/1‑94 (MQ=60)
                                                                         CACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG                       >  SRR4302545.1947542/1‑94 (MQ=60)
                                                                          ACCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGA                      >  SRR4302545.2514085/1‑94 (MQ=60)
                                                                           CCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGGGACGATAGCCAAGACCATGTCGGTCTATCTGCTTATCAGCCTGACTATCTCGCTGCTGATGAA                     >  SRR4302545.1217834/1‑94 (MQ=60)
                                                                           CCGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAA                     <  SRR4302545.2213154/94‑1 (MQ=60)
                                                                            CGTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT                    >  SRR4302545.1009669/1‑94 (MQ=60)
                                                                             GTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA                   >  SRR4302545.7759296/1‑94 (MQ=60)
                                                                             GTGCTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA                   >  SRR4302545.9331888/1‑94 (MQ=60)
                                                                               GCTGAATCAGACGG‑GG‑CCAGCCATCGAGACGATAGCCATGACCCTGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATC                 <  SRR4302545.9663363/94‑1 (MQ=60)
                                                                                CTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCT                >  SRR4302545.4876131/1‑94 (MQ=60)
                                                                                CTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCT                <  SRR4302545.1636597/94‑1 (MQ=60)
                                                                                CTGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCA                <  SRR4302545.6077226/94‑1 (MQ=60)
                                                                                 TGAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA               >  SRR4302545.5711419/1‑94 (MQ=60)
                                                                                  GAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT              <  SRR4302545.2039103/94‑1 (MQ=60)
                                                                                  GAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT              >  SRR4302545.10413171/1‑94 (MQ=60)
                                                                                  GAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT              <  SRR4302545.5689745/94‑1 (MQ=60)
                                                                                  GAATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT              <  SRR4302545.2980913/94‑1 (MQ=60)
                                                                                  GAATCAGACGG‑GG‑AAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT              <  SRR4302545.1126092/94‑1 (MQ=60)
                                                                                   AATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATA             >  SRR4302545.1064849/1‑94 (MQ=60)
                                                                                   AATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATA             >  SRR4302545.2644619/1‑94 (MQ=60)
                                                                                   AATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGGCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAGTATCTACA             >  SRR4302545.832298/1‑94 (MQ=60)
                                                                                    ATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA            >  SRR4302545.4365509/1‑94 (MQ=60)
                                                                                    ATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA            >  SRR4302545.4365511/1‑94 (MQ=60)
                                                                                    ATCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA            >  SRR4302545.6089533/1‑94 (MQ=60)
                                                                                     acaggcgG‑GG‑CAAGCCATGCAGACGATAGCCATGACCATGTCTGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC           <  SRR4302545.9308748/87‑1 (MQ=60)
                                                                                     acagccgG‑GG‑CAAGCCATCGAGGCGATAGCAATGACCATGTCGGTCGATCTGATTATCAGCCTGACTATCTCGCGGCTGATGAATATCTATAAC           <  SRR4302545.7828478/87‑1 (MQ=60)
                                                                                     TCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC           <  SRR4302545.4387950/94‑1 (MQ=60)
                                                                                     TCAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC           <  SRR4302545.10162192/94‑1 (MQ=60)
                                                                                      CAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACC          <  SRR4302545.873705/94‑1 (MQ=60)
                                                                                      CAGACGG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACC          <  SRR4302545.2360497/94‑1 (MQ=60)
                                                                                         aggG‑GG‑CAAGCCAGCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCC       <  SRR4302545.1038627/91‑1 (MQ=60)
                                                                                         acgG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCC       <  SRR4302545.8672317/91‑1 (MQ=60)
                                                                                         acgG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCC       <  SRR4302545.2195009/91‑1 (MQ=60)
                                                                                         acgG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCC       <  SRR4302545.8532069/91‑1 (MQ=60)
                                                                                         acgG‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCC       <  SRR4302545.7101668/91‑1 (MQ=60)
                                                                                         AC‑GTGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCC       <  SRR4302545.9607224/94‑1 (MQ=60)
                                                                                          G‑G‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC     <  SRR4302545.2933977/94‑1 (MQ=60)
                                                                                          G‑G‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC     >  SRR4302545.9595547/1‑94 (MQ=60)
                                                                                          G‑G‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC     <  SRR4302545.3614345/94‑1 (MQ=60)
                                                                                            G‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCA    <  SRR4302545.9900641/94‑1 (MQ=60)
                                                                                            G‑GG‑AAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCA    <  SRR4302545.9900642/94‑1 (MQ=60)
                                                                                               G‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC  <  SRR4302545.6933948/94‑1 (MQ=60)
                                                                                               G‑AAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC  <  SRR4302545.2719089/94‑1 (MQ=60)
                                                                                               |                                                                                              
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑G‑GG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC  >  NC_000913/3418747‑3418933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑