Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,714,436 2 bp→GC coding (261‑262/660 nt) yiaD → putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,714,4360CG100.0% 2184.9 / NA 637N87K (AAC→AAG) yiaDputative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (273/364);  total (273/364)
*NC_0009133,714,4370GC100.0% 2184.1 / NA 637V88L (GTG→CTG) yiaDputative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (273/364);  total (273/364)

Only 100 of 654 total aligned reads displayed.

ATCGCGGTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAACGTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAATGTGACCTTCG  >  NC_000913/3714348‑3714524
                                                                                        ||                                                                                       
aTCGCGGTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTgcg                                                                                     >  1:6660537/1‑94 (MQ=255)
aTCGCGGTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTgcg                                                                                     <  2:4972430/94‑1 (MQ=255)
  cgcgGTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGcgcg                                                                                   <  1:2802406/94‑1 (MQ=255)
   gcgGTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGa                                                                                  >  2:5105031/1‑94 (MQ=255)
   gcgGTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGa                                                                                  >  2:2056191/1‑94 (MQ=255)
     ggTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACa                                                                                <  2:3789589/94‑1 (MQ=255)
     ggTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACa                                                                                >  2:4739665/1‑94 (MQ=255)
     ggTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACa                                                                                <  2:6489580/94‑1 (MQ=255)
         aaGGCGCGCTGATTGGCGCAGCATCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAAt                                                                            <  1:5828134/94‑1 (MQ=255)
          aGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATg                                                                           >  1:6427263/1‑94 (MQ=255)
            gcgcgcTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATgcg                                                                         <  1:3362581/94‑1 (MQ=255)
             cgcgcTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATgcgc                                                                        >  2:8006295/1‑94 (MQ=255)
              gcgcTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGcgcg                                                                       <  1:4853749/94‑1 (MQ=255)
              gcgcTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGcgcg                                                                       <  2:8203106/94‑1 (MQ=255)
              gcgcTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGcgcg                                                                       <  1:7058500/94‑1 (MQ=255)
              gcgcTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGcgcg                                                                       <  1:8713636/94‑1 (MQ=255)
                  tGATTGGCGCAGCAGCAGGGGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCAc                                                                   >  2:4116193/1‑94 (MQ=255)
                  tGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCAc                                                                   >  2:4375119/1‑94 (MQ=255)
                   gATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACt                                                                  <  1:6784576/94‑1 (MQ=255)
                   gATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACt                                                                  <  1:6215708/94‑1 (MQ=255)
                   gATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACt                                                                  <  2:8769513/94‑1 (MQ=255)
                   gATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACt                                                                  <  1:2188122/94‑1 (MQ=255)
                    aTTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTg                                                                 >  2:2650815/1‑94 (MQ=255)
                    aTTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTg                                                                 <  2:5453873/94‑1 (MQ=255)
                     ttGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTgg                                                                <  1:5001434/94‑1 (MQ=255)
                     ttGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTgg                                                                >  2:10514796/1‑94 (MQ=255)
                       ggCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGgtg                                                              <  1:6018996/94‑1 (MQ=255)
                        gcgcAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGgtgt                                                             <  1:10209183/94‑1 (MQ=255)
                          gcagcagcaGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTa                                                           <  2:1563135/94‑1 (MQ=255)
                           cagcagcagGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAg                                                          <  2:3542429/94‑1 (MQ=255)
                            agcagcagGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTaac                                                         >  2:1154869/1‑92 (MQ=255)
                             gcagcagGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCg                                                        <  2:7952005/94‑1 (MQ=255)
                              cagcagGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCga                                                       >  2:9038760/1‑93 (MQ=255)
                              cagcagGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGt                                                       >  1:1420899/1‑94 (MQ=255)
                               agcagGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTa                                                      <  1:3089837/94‑1 (MQ=255)
                                gcagGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTaa                                                     <  2:2775347/94‑1 (MQ=255)
                                  agGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAAcc                                                   <  2:5760818/94‑1 (MQ=255)
                                  agGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCCCGGCACTGGTGTTAGCGTAAcc                                                   <  2:1881273/94‑1 (MQ=255)
                                   ggCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAAccc                                                  <  1:10608955/94‑1 (MQ=255)
                                   ggCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAAGGCGCGGCACTGGTGTTAGCGTAAccc                                                  <  1:1744114/94‑1 (MQ=255)
                                    gcgcAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCg                                                 <  1:10045777/94‑1 (MQ=255)
                                     cgcAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGc                                                >  2:6677915/1‑94 (MQ=255)
                                      gcAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCa                                               >  1:731665/1‑94 (MQ=255)
                                      gcAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCa                                               <  1:3896620/94‑1 (MQ=255)
                                       cAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAg                                              <  2:5173438/94‑1 (MQ=255)
                                       cAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAg                                              <  1:8057964/94‑1 (MQ=255)
                                       cAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAg                                              >  1:10405103/1‑94 (MQ=255)
                                       cAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAg                                              >  2:7801521/1‑94 (MQ=255)
                                       cAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAg                                              <  2:3369938/94‑1 (MQ=255)
                                        aGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGc                                             >  1:1273394/1‑94 (MQ=255)
                                         gCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTACCCCGCAGCg                                            >  1:7972847/1‑94 (MQ=255)
                                         gCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCg                                            <  1:9714346/94‑1 (MQ=255)
                                           tctGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCggg                                          <  2:737974/94‑1 (MQ=255)
                                            ctGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCgggg                                         <  1:1373798/94‑1 (MQ=255)
                                            ctGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCgggg                                         <  2:10379014/94‑1 (MQ=255)
                                            ctGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCgggg                                         <  2:9610059/94‑1 (MQ=255)
                                             tGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGa                                        <  1:1510775/94‑1 (MQ=255)
                                             tGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGa                                        >  1:7716178/1‑94 (MQ=255)
                                              gggCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGAt                                       <  1:4552121/94‑1 (MQ=255)
                                               ggcggcggcGTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATa                                      >  2:1822301/1‑94 (MQ=255)
                                                gcggcggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATaa                                     <  2:6220177/94‑1 (MQ=255)
                                                 gggcggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAAc                                    <  1:2688430/93‑1 (MQ=255)
                                                  ggcggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACa                                   <  2:2216361/94‑1 (MQ=255)
                                                  ggcggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACa                                   >  1:4337271/1‑94 (MQ=255)
                                                  ggcggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACa                                   >  2:8344930/1‑94 (MQ=255)
                                                   gcggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACAt                                  >  1:4038727/1‑94 (MQ=255)
                                                   gcggcgGTAGGTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAAGGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAAGAt                                  <  1:3633303/94‑1 (MQ=255)
                                                    cggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACAtt                                 >  1:886905/1‑94 (MQ=255)
                                                    cggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACAtt                                 >  1:9134065/1‑94 (MQ=255)
                                                    cggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACAtt                                 >  2:7077906/1‑94 (MQ=255)
                                                    cggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACAtt                                 >  1:9290413/1‑94 (MQ=255)
                                                     ggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTa                                <  2:7154869/94‑1 (MQ=255)
                                                     ggcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTa                                <  2:4850136/94‑1 (MQ=255)
                                                      gcgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTAt                               <  1:828854/94‑1 (MQ=255)
                                                       cgTTGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATc                              >  1:5634846/1‑94 (MQ=255)
                                                          tGGTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTc                           >  2:6289071/1‑94 (MQ=255)
                                                           ggTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCa                          >  1:10141423/1‑94 (MQ=255)
                                                           ggTTATTACATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCa                          <  1:7568755/94‑1 (MQ=255)
                                                              tattaCATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAata                       >  2:7579927/1‑94 (MQ=255)
                                                               attaCATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAatat                      <  1:2329357/94‑1 (MQ=255)
                                                                ttaCATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATg                     <  2:4633027/94‑1 (MQ=255)
                                                                ttaCATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATg                     >  2:8643807/1‑94 (MQ=255)
                                                                ttaCATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATg                     <  1:4425407/94‑1 (MQ=255)
                                                                 taCATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGc                    >  1:7138650/1‑94 (MQ=255)
                                                                 taCATGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGc                    <  2:6359856/94‑1 (MQ=255)
                                                                     tGGATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGaa                <  2:2541377/94‑1 (MQ=255)
                                                                      ggATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAAc               <  1:9954665/94‑1 (MQ=255)
                                                                      ggATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAAc               >  2:3156989/1‑94 (MQ=255)
                                                                       gATGTGCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACa              <  2:397220/94‑1 (MQ=255)
                                                                         tgtgCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAAt            <  1:526571/94‑1 (MQ=255)
                                                                            gCAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAAtgtg         <  2:6005582/94‑1 (MQ=255)
                                                                             cAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAATGTGa        >  1:2529871/1‑94 (MQ=255)
                                                                             cAGGAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAATGTGa        <  2:9176582/94‑1 (MQ=255)
                                                                               ggAAGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAATGTGAcc      >  1:8410831/1‑94 (MQ=255)
                                                                                 aaGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAATGTGACCtt    <  2:10199143/94‑1 (MQ=255)
                                                                                 aaGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAATGTGACCtt    <  1:4221739/94‑1 (MQ=255)
                                                                                 aaGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAATGTGACCtt    >  1:2999456/1‑94 (MQ=255)
                                                                                  aGCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAATGTGACCTTc   >  2:3680125/1‑94 (MQ=255)
                                                                                   gCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAATGTGACCTTCg  >  1:5399256/1‑94 (MQ=255)
                                                                                   gCGAAGCTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATCATCCTCAATATGCCGAACAATGTGACCTTCg  <  2:6822368/94‑1 (MQ=255)
                                                                                        ||                                                                                       
ATCGCGGTAAAGGCGCGCTGATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTACATGGATGTGCAGGAAGCGAACGTGCGCGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTATCCTCAATATGCCGAACAATGTGACCTTCG  >  NC_000913/3714348‑3714524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 523 total aligned reads displayed.
TGTGGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCG  >  NC_000913/3729935‑3730121
                                                                                             |                                                                                             
TGTGGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGA                                                                                               >  SRR4302545.2640472/1‑94 (MQ=60)
TGTGGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGA                                                                                               >  SRR4302545.7851362/1‑94 (MQ=60)
TGTGGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGA                                                                                               >  SRR4302545.1408400/1‑94 (MQ=60)
 GTGGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTGCTACGAAGGCGAAATTATTTTTGCGAG                                                                                              <  SRR4302545.7260852/94‑1 (MQ=60)
 GTGGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAG                                                                                              >  SRR4302545.8898616/1‑94 (MQ=60)
 GTGGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAG                                                                                              <  SRR4302545.6018078/94‑1 (MQ=60)
 GTGGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAG                                                                                              <  SRR4302545.7155709/94‑1 (MQ=60)
   GGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAG                                                                                            <  SRR4302545.10879433/94‑1 (MQ=60)
   GGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAG                                                                                            <  SRR4302545.519358/94‑1 (MQ=60)
    GGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGA                                                                                           <  SRR4302545.2501913/94‑1 (MQ=60)
    GGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGA                                                                                           >  SRR4302545.2340143/1‑94 (MQ=60)
    GGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGA                                                                                           >  SRR4302545.4572895/1‑94 (MQ=60)
    GGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGA                                                                                           <  SRR4302545.4398818/94‑1 (MQ=60)
     GGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAA                                                                                          >  SRR4302545.384238/1‑94 (MQ=60)
     GGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTACTGTGTGGTATTTAGCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAA                                                                                          <  SRR4302545.6263564/94‑1 (MQ=60)
      GAAAATGGGTCTGGTAAATCAACGCTGATGAATGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAG                                                                                         <  SRR4302545.5461493/94‑1 (MQ=60)
      GAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAG                                                                                         <  SRR4302545.6513669/94‑1 (MQ=60)
      GAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAG                                                                                         <  SRR4302545.8182182/94‑1 (MQ=60)
      GAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAG                                                                                         >  SRR4302545.2090104/1‑94 (MQ=60)
       AAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGA                                                                                        >  SRR4302545.10590282/1‑94 (MQ=60)
       AAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGA                                                                                        >  SRR4302545.2072579/1‑94 (MQ=60)
        AAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAG                                                                                       <  SRR4302545.3872792/94‑1 (MQ=60)
        AAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAG                                                                                       <  SRR4302545.8421928/94‑1 (MQ=60)
         AATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGA                                                                                      <  SRR4302545.10292138/94‑1 (MQ=60)
          ATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGAT                                                                                     >  SRR4302545.7094593/1‑94 (MQ=60)
           TGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATT                                                                                    <  SRR4302545.6769777/94‑1 (MQ=60)
           TGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATT                                                                                    <  SRR4302545.10416363/94‑1 (MQ=60)
            GGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTC                                                                                   <  SRR4302545.3170562/94‑1 (MQ=60)
            GGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTC                                                                                   >  SRR4302545.1543289/1‑94 (MQ=60)
              GTCTGGTAAATGAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAG                                                                                 >  SRR4302545.7054803/1‑94 (MQ=60)
              GTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACTAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAG                                                                                 <  SRR4302545.6874813/94‑1 (MQ=60)
              GTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAG                                                                                 <  SRR4302545.10868701/94‑1 (MQ=60)
              GTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAG                                                                                 <  SRR4302545.8146894/94‑1 (MQ=60)
               TCTGGTAAATCAACGCTGATGAGAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGG                                                                                <  SRR4302545.7376033/94‑1 (MQ=60)
               TCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGG                                                                                <  SRR4302545.2048833/94‑1 (MQ=60)
               TCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGG                                                                                <  SRR4302545.5158926/94‑1 (MQ=60)
               TCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGG                                                                                >  SRR4302545.955593/1‑94 (MQ=60)
                CTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGC                                                                               <  SRR4302545.4645150/94‑1 (MQ=60)
                CTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGC                                                                               <  SRR4302545.588934/94‑1 (MQ=60)
                CTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGC                                                                               <  SRR4302545.7359054/94‑1 (MQ=60)
                CTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGC                                                                               <  SRR4302545.9833472/94‑1 (MQ=60)
                 TGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCG                                                                              <  SRR4302545.6366554/94‑1 (MQ=60)
                 TGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCG                                                                              >  SRR4302545.996594/1‑94 (MQ=60)
                    TAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTTCGAGAGAAGAGATTCAGGCGAGT                                                                           >  SRR4302545.6031372/1‑94 (MQ=60)
                    TAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGT                                                                           >  SRR4302545.2690229/1‑94 (MQ=60)
                     AAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTC                                                                          <  SRR4302545.4785240/94‑1 (MQ=60)
                     AAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTC                                                                          >  SRR4302545.4859725/1‑94 (MQ=60)
                     AAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTC                                                                          <  SRR4302545.4959350/94‑1 (MQ=60)
                      AGTCAACGCTGATGAAAGTGCTTTGTTGTATTTATCCCCATGGCTCCTACGAAGTCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCA                                                                         <  SRR4302545.2529172/94‑1 (MQ=60)
                      AATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCA                                                                         >  SRR4302545.8102503/1‑94 (MQ=60)
                       ATAAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCAC                                                                        >  SRR4302545.8651262/1‑94 (MQ=60)
                        TCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACA                                                                       >  SRR4302545.5657463/1‑94 (MQ=60)
                        TCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACA                                                                       >  SRR4302545.1434378/1‑94 (MQ=60)
                         cacgGCTGATAAAAGTGGTTTGTGTTATTTATCCCCATGGCTCCAAGGAAGGCAAAATTATTTTGGCGGGAGAAGAGATT‑AGGCGAGTCACATC                                                                     <  SRR4302545.3507350/90‑1 (MQ=41)
                         CAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACAT                                                                      >  SRR4302545.2596437/1‑94 (MQ=60)
                           ACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCC                                                                    <  SRR4302545.10458230/94‑1 (MQ=60)
                           ACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCC                                                                    <  SRR4302545.2200060/94‑1 (MQ=60)
                            CGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCG                                                                   <  SRR4302545.1142470/94‑1 (MQ=60)
                             GCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGC                                                                  >  SRR4302545.6300304/1‑94 (MQ=60)
                             GCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGC                                                                  >  SRR4302545.1658934/1‑94 (MQ=60)
                             GCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGC                                                                  >  SRR4302545.6712894/1‑94 (MQ=60)
                              CTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGGCACATCCGCG                                                                 >  SRR4302545.2275858/1‑94 (MQ=60)
                               TGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGA                                                                >  SRR4302545.10659355/1‑94 (MQ=60)
                               TGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGA                                                                >  SRR4302545.8358915/1‑94 (MQ=60)
                               TGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGA                                                                >  SRR4302545.3031220/1‑94 (MQ=60)
                                GATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGAT                                                               >  SRR4302545.4175404/1‑94 (MQ=60)
                                 ATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATA                                                              >  SRR4302545.4015866/1‑94 (MQ=60)
                                 ATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATA                                                              <  SRR4302545.9207432/94‑1 (MQ=60)
                                 ATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATA                                                              <  SRR4302545.8133141/94‑1 (MQ=60)
                                   GAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACC                                                            >  SRR4302545.3208086/1‑94 (MQ=60)
                                    AAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCG                                                           >  SRR4302545.4234515/1‑94 (MQ=60)
                                    AAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCG                                                           >  SRR4302545.7752386/1‑94 (MQ=60)
                                    AAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCG                                                           <  SRR4302545.3759245/94‑1 (MQ=60)
                                    AAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCG                                                           >  SRR4302545.741612/1‑94 (MQ=60)
                                     AAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGA                                                          >  SRR4302545.7425154/1‑94 (MQ=60)
                                      AGTGCTGTGTGGTATTTATCCCCATTGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTTAGGCGAGTCACATCCGCGATACCGAC                                                         >  SRR4302545.1629374/1‑94 (MQ=60)
                                      AGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAA                                                         <  SRR4302545.7248230/94‑1 (MQ=60)
                                      AGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAA                                                         <  SRR4302545.5085773/94‑1 (MQ=60)
                                       GTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAAC                                                        >  SRR4302545.9904304/1‑94 (MQ=60)
                                       GTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAAC                                                        <  SRR4302545.5840418/94‑1 (MQ=60)
                                       GTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAAC                                                        <  SRR4302545.5908311/94‑1 (MQ=60)
                                        TGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACG                                                       <  SRR4302545.1353962/94‑1 (MQ=60)
                                        TGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACG                                                       >  SRR4302545.2328061/1‑94 (MQ=60)
                                         GCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGCACGC                                                      >  SRR4302545.4496388/1‑94 (MQ=60)
                                         GCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGC                                                      >  SRR4302545.5049237/1‑94 (MQ=60)
                                           TGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAA                                                    >  SRR4302545.102192/1‑94 (MQ=60)
                                           TGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAA                                                    >  SRR4302545.1227522/1‑94 (MQ=60)
                                           TGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAA                                                    <  SRR4302545.2720556/94‑1 (MQ=60)
                                           TGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAA                                                    <  SRR4302545.2462677/94‑1 (MQ=60)
                                           CGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAA                                                    <  SRR4302545.3609033/94‑1 (MQ=60)
                                           CGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAA                                                    <  SRR4302545.3536092/94‑1 (MQ=60)
                                            GTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAA                                                   <  SRR4302545.1131844/94‑1 (MQ=60)
                                            GTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAA                                                   <  SRR4302545.5282131/94‑1 (MQ=60)
                                             TGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCACAG                                                  >  SRR4302545.10903030/1‑94 (MQ=60)
                                             TGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAG                                                  >  SRR4302545.3474349/1‑94 (MQ=60)
                                             TGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAG                                                  <  SRR4302545.4690030/94‑1 (MQ=60)
                                              GTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGG                                                 <  SRR4302545.10254952/94‑1 (MQ=60)
                                              GTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGG                                                 <  SRR4302545.5620153/94‑1 (MQ=60)
                                               TGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGT                                                <  SRR4302545.7255074/94‑1 (MQ=60)
                                                GGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTA                                               <  SRR4302545.346405/94‑1 (MQ=60)
                                                GGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTA                                               <  SRR4302545.6571089/94‑1 (MQ=60)
                                                 GTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTAT                                              <  SRR4302545.978943/94‑1 (MQ=60)
                                                  GATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATC                                             <  SRR4302545.8774224/94‑1 (MQ=60)
                                                   ATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAGCGCAAAGGTATCG                                            <  SRR4302545.7657949/94‑1 (MQ=60)
                                                   ATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCG                                            <  SRR4302545.8855078/94‑1 (MQ=60)
                                                   ATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGAATCG                                            >  SRR4302545.10007844/1‑94 (MQ=60)
                                                     TTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCC                                          <  SRR4302545.5402544/94‑1 (MQ=60)
                                                     TTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCC                                          <  SRR4302545.1522364/94‑1 (MQ=60)
                                                     TTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCC                                          >  SRR4302545.697232/1‑94 (MQ=60)
                                                      TATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCA                                         >  SRR4302545.10825973/1‑94 (MQ=60)
                                                      TATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCA                                         >  SRR4302545.7477159/1‑94 (MQ=60)
                                                      TATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCA                                         <  SRR4302545.2399907/94‑1 (MQ=60)
                                                      TATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCA                                         >  SRR4302545.1908334/1‑94 (MQ=60)
                                                       ATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCAT                                        >  SRR4302545.7543839/1‑94 (MQ=60)
                                                       ATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCAT                                        <  SRR4302545.9346979/94‑1 (MQ=60)
                                                       ATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCAT                                        >  SRR4302545.2992747/1‑94 (MQ=60)
                                                       ATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCAT                                        >  SRR4302545.339408/1‑94 (MQ=60)
                                                         CCCCATGGCTCCTACGAAGGCGAGATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCAAATCCCCGATACCGAACGCAAAGAGATCGCCATCC                                      >  SRR4302545.4072029/1‑94 (MQ=60)
                                                         CCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCA                                      >  SRR4302545.10496438/1‑94 (MQ=60)
                                                          CCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCAT                                     <  SRR4302545.3261425/94‑1 (MQ=60)
                                                           CCATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATT                                    >  SRR4302545.5789976/1‑94 (MQ=60)
                                                            CATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTC                                   <  SRR4302545.556307/94‑1 (MQ=60)
                                                            CATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTC                                   >  SRR4302545.1114746/1‑94 (MQ=60)
                                                             ATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGCTCCCGAACGCAAAGGcacccccaccattca                                  >  SRR4302545.2963729/1‑79 (MQ=60)
                                                             ATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCA                                  <  SRR4302545.6816132/94‑1 (MQ=60)
                                                             ATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCA                                  >  SRR4302545.460421/1‑94 (MQ=60)
                                                             ATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCA                                  >  SRR4302545.7931842/1‑94 (MQ=60)
                                                             ATGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCA                                  <  SRR4302545.6115922/94‑1 (MQ=60)
                                                              TGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCAT                                 <  SRR4302545.4752694/94‑1 (MQ=60)
                                                              TGGCTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCAGCGATACCGAACGCAAAGGTATCGCCATCATTCAT                                 >  SRR4302545.7636047/1‑94 (MQ=60)
                                                              TGGCTCCTACGAAGGCGAAATTATATTTACGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGACCGCAAAGGTATCGCCATCAATCAT                                 <  SRR4302545.9945019/94‑1 (MQ=60)
                                                                 CTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAG                              >  SRR4302545.4219651/1‑94 (MQ=60)
                                                                 CTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAG                              >  SRR4302545.800509/1‑94 (MQ=60)
                                                                 CTCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAG                              >  SRR4302545.4349094/1‑94 (MQ=60)
                                                                  TCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGG                             <  SRR4302545.8825171/94‑1 (MQ=60)
                                                                  TCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGG                             <  SRR4302545.6996234/94‑1 (MQ=60)
                                                                  TCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGG                             >  SRR4302545.3113947/1‑94 (MQ=60)
                                                                  TCCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGAATCGCCATCATTCATCAGG                             >  SRR4302545.9375460/1‑94 (MQ=60)
                                                                   CCTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGA                            <  SRR4302545.8853022/94‑1 (MQ=60)
                                                                    CTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAA                           <  SRR4302545.2623390/94‑1 (MQ=60)
                                                                    CTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAA                           <  SRR4302545.3229364/94‑1 (MQ=60)
                                                                    CTACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAA                           <  SRR4302545.9765228/94‑1 (MQ=60)
                                                                     TACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAAT                          <  SRR4302545.6649228/94‑1 (MQ=60)
                                                                     TACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAAT                          <  SRR4302545.10343168/94‑1 (MQ=60)
                                                                     TACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAAT                          >  SRR4302545.8584600/1‑94 (MQ=60)
                                                                      ACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCTCATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATT                         <  SRR4302545.7604900/94‑1 (MQ=60)
                                                                      ACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATT                         <  SRR4302545.8257001/94‑1 (MQ=60)
                                                                      ACGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATT                         >  SRR4302545.3094526/1‑94 (MQ=60)
                                                                      ACGAAGACGAAATTATTTTTGCGAGAGAAGTGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATT                         <  SRR4302545.607042/94‑1 (MQ=60)
                                                                       CGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTG                        >  SRR4302545.6908383/1‑94 (MQ=60)
                                                                       CGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTG                        >  SRR4302545.1705854/1‑94 (MQ=60)
                                                                       CGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTG                        <  SRR4302545.1458594/94‑1 (MQ=60)
                                                                       CGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTG                        <  SRR4302545.9000474/94‑1 (MQ=60)
                                                                       CGAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTG                        >  SRR4302545.5495207/1‑94 (MQ=60)
                                                                        GAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGG                       <  SRR4302545.25522/94‑1 (MQ=60)
                                                                        GAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGG                       >  SRR4302545.10072808/1‑94 (MQ=60)
                                                                        GAAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGG                       <  SRR4302545.3786906/94‑1 (MQ=60)
                                                                         AAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGC                      >  SRR4302545.4439780/1‑94 (MQ=60)
                                                                         AAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGC                      >  SRR4302545.368844/1‑94 (MQ=60)
                                                                         AAGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGACACATCCGCGATACCGAACGCAAAGGCATCGCCATCATTCATCAGGAATTGGC                      >  SRR4302545.7443149/1‑94 (MQ=60)
                                                                          AGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCC                     <  SRR4302545.1489580/94‑1 (MQ=60)
                                                                          AGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCC                     <  SRR4302545.4478484/94‑1 (MQ=60)
                                                                          AGGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCC                     <  SRR4302545.1762407/94‑1 (MQ=60)
                                                                           GGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCC                    >  SRR4302545.9129892/1‑94 (MQ=60)
                                                                           GGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCC                    <  SRR4302545.4330962/94‑1 (MQ=60)
                                                                           GGCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCC                    >  SRR4302545.5730158/1‑94 (MQ=60)
                                                                            GCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCT                   <  SRR4302545.6191551/94‑1 (MQ=60)
                                                                            GCGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATCGGCCCT                   >  SRR4302545.9656321/1‑94 (MQ=60)
                                                                             CGAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTG                  >  SRR4302545.10217376/1‑94 (MQ=60)
                                                                              GAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGG                 >  SRR4302545.2766179/1‑94 (MQ=60)
                                                                              GAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGG                 >  SRR4302545.1368770/1‑94 (MQ=60)
                                                                              GAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGG                 >  SRR4302545.2184046/1‑94 (MQ=60)
                                                                              GAAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGG                 <  SRR4302545.1968255/94‑1 (MQ=60)
                                                                              GAAATAATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGG                 <  SRR4302545.1928961/94‑1 (MQ=60)
                                                                               AAATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGT                >  SRR4302545.4827080/1‑94 (MQ=60)
                                                                                AATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTG               >  SRR4302545.9083222/1‑94 (MQ=60)
                                                                                AATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTG               <  SRR4302545.10118498/94‑1 (MQ=60)
                                                                                 ATTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGA              >  SRR4302545.5692857/1‑94 (MQ=60)
                                                                                  TTATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAA             <  SRR4302545.5323914/94‑1 (MQ=60)
                                                                                   TATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAA            <  SRR4302545.2875895/94‑1 (MQ=60)
                                                                                    ATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAG           >  SRR4302545.6853542/1‑94 (MQ=60)
                                                                                    ATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAG           <  SRR4302545.7227322/94‑1 (MQ=60)
                                                                                    ATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAG           >  SRR4302545.2373699/1‑94 (MQ=60)
                                                                                    ATTTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAG           >  SRR4302545.440484/1‑94 (MQ=60)
                                                                                      TTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAA         <  SRR4302545.4682783/94‑1 (MQ=60)
                                                                                      TTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAA         <  SRR4302545.429602/94‑1 (MQ=60)
                                                                                      TTTTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAA         >  SRR4302545.3326868/1‑94 (MQ=60)
                                                                                        TTGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATT       <  SRR4302545.10690661/94‑1 (MQ=60)
                                                                                         TGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTG      >  SRR4302545.7697374/1‑94 (MQ=60)
                                                                                         TGCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTG      >  SRR4302545.1784476/1‑94 (MQ=60)
                                                                                          GCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGA     <  SRR4302545.881763/94‑1 (MQ=60)
                                                                                          GCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGA     >  SRR4302545.1052808/1‑94 (MQ=60)
                                                                                          GCGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGA     <  SRR4302545.10117688/94‑1 (MQ=60)
                                                                                           CGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGAC    <  SRR4302545.1884375/94‑1 (MQ=60)
                                                                                           CGAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGAC    >  SRR4302545.9179143/1‑94 (MQ=60)
                                                                                            GAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACC   <  SRR4302545.2124195/94‑1 (MQ=60)
                                                                                            GAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACC   <  SRR4302545.9778499/94‑1 (MQ=60)
                                                                                            GAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACC   <  SRR4302545.537620/94‑1 (MQ=60)
                                                                                            GAGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACC   <  SRR4302545.10163010/94‑1 (MQ=60)
                                                                                             AGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCG  >  SRR4302545.7980366/1‑94 (MQ=60)
                                                                                             |                                                                                             
TGTGGGGAAAATGGGTCTGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCG  >  NC_000913/3729935‑3730121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑