Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,876,595 G→C P385A (CCG→GCG)  gyrB ← DNA gyrase subunit B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,876,5950GC100.0% 1469.9 / NA 422P385A (CCG→GCG) gyrBDNA gyrase subunit B
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (96/326);  total (96/326)

Only 100 of 574 total aligned reads displayed.

GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTC  >  NC_000913/3876504‑3876685
                                                                                            |                                                                                          
ggATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACgcgccg                                                                                          <  1:9892096/94‑1 (MQ=255)
ggATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACgcgccg                                                                                          <  1:2209512/94‑1 (MQ=255)
  aTCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTCACGCGCGCGACGCGCCGCt                                                                                        >  1:5600975/1‑94 (MQ=255)
     gcgTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTca                                                                                     <  1:6126825/94‑1 (MQ=255)
      cgTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCGTTTCACGCGCGCGACGCGGCGCTTcac                                                                                    >  2:2403929/1‑94 (MQ=255)
       gTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTcacg                                                                                   <  1:8141377/94‑1 (MQ=255)
        ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCGCCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTcacgg                                                                                  <  2:8069199/94‑1 (MQ=255)
        ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTcacgg                                                                                  <  2:10333666/94‑1 (MQ=255)
        ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTcacgg                                                                                  <  2:4025571/94‑1 (MQ=255)
         tCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTcacggg                                                                                 <  1:899949/94‑1 (MQ=255)
         tCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTCACGCGCGCGACGCGCCGCTTcccggg                                                                                 >  2:3429998/1‑94 (MQ=255)
           cTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggca                                                                               <  1:5522807/94‑1 (MQ=255)
           cTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTTACGCGCGCGACGCGCCGCTTcaccggcc                                                                               >  1:585765/1‑93 (MQ=255)
            tGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcac                                                                              <  2:8487036/94‑1 (MQ=255)
              gCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTCACGCGCGCGACGCGCCGCTTcccgggcccgg                                                                            >  1:6662477/1‑94 (MQ=255)
               cAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcacggg                                                                           <  1:2493262/94‑1 (MQ=255)
               cAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTCACGCGCGCGACGCGCCGCTTcacgggcacggg                                                                           >  1:3405713/1‑94 (MQ=255)
                aGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTCCCGCGGGCGACGCGCCGCTTCacgggcaccggc                                                                          >  2:7255615/1‑94 (MQ=255)
                 gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGGCGCGCCGCTTCAcgcgcacgggca                                                                         >  2:8569642/1‑94 (MQ=255)
                 gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTCACCCGCGCGACGCGCCGCCTcacgggcacgggga                                                                         >  2:2900167/1‑92 (MQ=255)
                 gTCTGCCAGTGTGCCGGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCAcgggcacgggca                                                                         <  2:4869467/94‑1 (MQ=255)
                     gCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCAt                                                                     <  2:5874551/94‑1 (MQ=255)
                      ccAGTTTTCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCAGTTCTAGCGCGCGGCGCGCCGCTTCACGGGCACCGGCTTCATc                                                                    >  1:9351593/1‑94 (MQ=255)
                      ccAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATc                                                                    <  2:5663512/94‑1 (MQ=255)
                       cAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCg                                                                   <  1:8767985/94‑1 (MQ=255)
                         gTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGGCGCGCCGCTTCACCGGCACGGGCAGCATCgca                                                                 >  1:10032418/1‑92 (MQ=255)
                           ttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGGAGCATCGATaa                                                               >  2:6636969/1‑94 (MQ=255)
                             gCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGGCATTCAACCGCGCGGCGCGCCGCCTCACGGGCCCGGGGAGCAACGATaaat                                                             >  1:9118994/1‑92 (MQ=255)
                               ccGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAtttt                                                           <  1:961842/94‑1 (MQ=255)
                               ccGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAtttt                                                           >  1:4858682/1‑94 (MQ=255)
                                tggCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTTACGCGCGCGGCGCGCCGCTTCACGGGGGCGGGGAGCATCGATAAatttt                                                          >  1:2670583/2‑93 (MQ=255)
                                 ggCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGCATTT‑ACGCCCGCGGCGCGGCGCTTTTCAGGGACGGGGAGCAGCTCTAAtttttc                                                         >  1:200209/1‑92 (MQ=255)
                                  gCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTCACGCGCGCGACGCGCCGCTTCACCGGGACGGGGAGCATCGATCATTTTTcc                                                        >  1:6437454/1‑94 (MQ=255)
                                   cAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCa                                                       <  1:5093131/94‑1 (MQ=255)
                                   cAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTCCa                                                       >  2:8750498/1‑94 (MQ=255)
                                    aGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCaa                                                      <  1:3891105/94‑1 (MQ=255)
                                    aGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGGCATTTCACGCGCGCGGCGCGCCGCTTCACGGGGACGGGCAGCATCGATAATTTTTccca                                                      >  2:984258/1‑92 (MQ=255)
                                      gCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAAcc                                                    >  1:1539419/1‑94 (MQ=255)
                                        ccGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTTAAGCGCGCGCCGCGCCGCTTCACGGGCACGGGCAGCCTCGATAATTTTGCCcaccac                                                  >  2:5419212/1‑94 (MQ=255)
                                         cGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGGCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTGCAACCAca                                                 >  2:8695238/1‑93 (MQ=255)
                                           cTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAt                                               <  2:1641796/94‑1 (MQ=255)
                                            tAAGGCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAtt                                              <  2:3218993/94‑1 (MQ=255)
                                              aGTCGAGCGCACCTTTACGGC‑GGGGCCTTTCACGCGCGCGACGCGCCGGTTCCCGGGCACGGGCAGCATCGATAATTTTGCCCACCACGAtttt                                            >  2:3742727/1‑94 (MQ=255)
                                                 cGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTcgc                                         <  1:594131/94‑1 (MQ=255)
                                                  gAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTcgcg                                        <  1:1259796/94‑1 (MQ=255)
                                                  gAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTcgcg                                        <  1:6747948/94‑1 (MQ=255)
                                                  gAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTcgcg                                        <  1:5699985/94‑1 (MQ=255)
                                                   aGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGt                                       <  2:7646478/94‑1 (MQ=255)
                                                     cgcACCTTTACGGC‑GGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGGACGGGCAGCATCGATAATTTTTCCCACCACGATTTTCtcgtcg                                     >  2:7867820/1‑94 (MQ=255)
                                                     cccACCTTTACGGC‑GGGGCATTTCCCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCg                                     <  1:1167734/92‑1 (MQ=255)
                                                       cACCTTTACGGC‑GGGTCATTTCACGCGCGCGCCGCGCCGCTTCACGGGAACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGt                                   >  2:1504084/1‑94 (MQ=255)
                                                       cACCTTTACGGC‑GGGTCATTTCACGCGCGCAACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGt                                   <  1:7361032/94‑1 (MQ=255)
                                                        cccTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGtt                                  <  2:4405581/93‑1 (MQ=255)
                                                        cccTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGtt                                  <  1:8457018/93‑1 (MQ=255)
                                                        cccTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGtt                                  <  2:1055209/93‑1 (MQ=255)
                                                         ccTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTg                                 <  1:7597837/94‑1 (MQ=255)
                                                          cTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTgg                                <  1:3021737/94‑1 (MQ=255)
                                                           tttACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTggg                               <  1:4529690/94‑1 (MQ=255)
                                                            ttACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGt                              <  2:2792673/94‑1 (MQ=255)
                                                             tACGGC‑GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtt                             <  2:1929069/94‑1 (MQ=255)
                                                               cggc‑ggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtttt                           <  2:2294141/94‑1 (MQ=255)
                                                               cggc‑ggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtttt                           >  1:8660487/1‑94 (MQ=255)
                                                                 gc‑ggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc                         <  1:6844950/94‑1 (MQ=255)
                                                                 gc‑ggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc                         >  1:975169/1‑94 (MQ=255)
                                                                  c‑ggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCca                        <  2:10238701/94‑1 (MQ=255)
                                                                    gggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcag                       >  2:9536897/1‑94 (MQ=255)
                                                                     ggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagc                      <  2:5136169/94‑1 (MQ=255)
                                                                      gTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagca                     >  1:4174040/1‑94 (MQ=255)
                                                                      gTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagca                     <  2:6518529/94‑1 (MQ=255)
                                                                          tttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTa                 <  1:7691898/94‑1 (MQ=255)
                                                                          tttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCAGTTGGGTTTTCCAGCAGGtt                 >  2:9114244/1‑93 (MQ=255)
                                                                           ttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt                <  1:10627360/94‑1 (MQ=255)
                                                                           ttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt                <  1:4238420/94‑1 (MQ=255)
                                                                           ttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt                >  1:4395105/1‑94 (MQ=255)
                                                                           ttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt                >  1:3750089/1‑94 (MQ=255)
                                                                           ttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt                >  2:6114228/1‑94 (MQ=255)
                                                                            tCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAtt               >  2:2578710/1‑94 (MQ=255)
                                                                            tCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAtt               >  1:1721923/1‑94 (MQ=255)
                                                                             cACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc              <  2:9355767/94‑1 (MQ=255)
                                                                             cACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc              <  2:1179817/94‑1 (MQ=255)
                                                                             cACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc              >  2:5290076/1‑94 (MQ=255)
                                                                              aCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGCTGGGTTTTCCAGCAGGTATTCt             >  2:6816581/1‑94 (MQ=255)
                                                                               cgcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTg            <  2:7053409/94‑1 (MQ=255)
                                                                               cgcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTg            >  2:3950229/1‑94 (MQ=255)
                                                                                gcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGc           >  1:7933207/1‑94 (MQ=255)
                                                                                 cgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGcc          <  1:3538651/94‑1 (MQ=255)
                                                                                 cgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGcc          >  2:7549561/1‑94 (MQ=255)
                                                                                 cgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGcc          <  2:2122385/94‑1 (MQ=255)
                                                                                  gcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCca         <  1:6950138/94‑1 (MQ=255)
                                                                                    gcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagc       <  1:5192363/94‑1 (MQ=255)
                                                                                     cgccgcgCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagca      <  2:1314481/91‑1 (MQ=255)
                                                                                     cgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagca      <  1:6364783/94‑1 (MQ=255)
                                                                                     cgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagca      <  1:6278475/94‑1 (MQ=255)
                                                                                      gACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagcag     <  1:10439734/94‑1 (MQ=255)
                                                                                      gACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagcag     >  2:6404192/1‑94 (MQ=255)
                                                                                      gACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagcag     >  2:7774806/1‑94 (MQ=255)
                                                                                      gACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagcag     <  1:2838217/94‑1 (MQ=255)
                                                                                        cgcgCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgtt   >  2:7389680/1‑94 (MQ=255)
                                                                                         gcgccgCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgttc  <  2:818864/94‑1 (MQ=255)
                                                                                         gcgccgCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgttc  <  2:3096005/94‑1 (MQ=255)
                                                                                            |                                                                                          
GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGC‑GGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTC  >  NC_000913/3876504‑3876685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 465 total aligned reads displayed.
CCGGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGTACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATAA  >  NC_000913/3879736‑3879922
                                                                                             |                                                                                             
CCGGACCGGTCGTCGCGCCTGGACCGGTTGGCTGAACCAGCGCAACAGGTTCCACGATTTCCATCTCGAGAGCAGGACCGGTCAGCGACAACGC                                                                                               <  SRR4302545.3076731/94‑1 (MQ=34)
CCGGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGC                                                                                               <  SRR4302545.754832/94‑1 (MQ=60)
 CGGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCA                                                                                              <  SRR4302545.4919839/94‑1 (MQ=60)
 CGGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCA                                                                                              >  SRR4302545.9259302/1‑94 (MQ=60)
 CGGAACGGTCGTCGCACCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCA                                                                                              >  SRR4302545.5393940/1‑94 (MQ=60)
  GGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCAC                                                                                             >  SRR4302545.10216067/1‑94 (MQ=60)
  GGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCAC                                                                                             >  SRR4302545.9602935/1‑94 (MQ=60)
  GGAACGGTCGTCGCTCCTGGCTCGGGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGACCAGTACCGGTCAGCGACAACGCAC                                                                                             >  SRR4302545.8265136/1‑94 (MQ=60)
    AACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCG                                                                                           >  SRR4302545.9895240/1‑94 (MQ=60)
    AACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCG                                                                                           <  SRR4302545.6153382/94‑1 (MQ=60)
    AACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCG                                                                                           >  SRR4302545.3941319/1‑94 (MQ=60)
    AACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCG                                                                                           >  SRR4302545.8735172/1‑94 (MQ=60)
     ACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACCACGCACCGT                                                                                          >  SRR4302545.546212/1‑94 (MQ=60)
     ACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCCCCGT                                                                                          >  SRR4302545.6212323/1‑94 (MQ=60)
     ACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGT                                                                                          <  SRR4302545.8209089/94‑1 (MQ=60)
     ACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGT                                                                                          >  SRR4302545.8144291/1‑94 (MQ=60)
      CGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTC                                                                                         >  SRR4302545.8693502/1‑94 (MQ=60)
      CGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTC                                                                                         >  SRR4302545.8909635/1‑94 (MQ=60)
      CGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTC                                                                                         <  SRR4302545.2375845/94‑1 (MQ=60)
      CGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTC                                                                                         >  SRR4302545.864570/1‑94 (MQ=60)
       GGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCC                                                                                        >  SRR4302545.48013/1‑94 (MQ=60)
       GGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCA                                                                                        <  SRR4302545.4396167/94‑1 (MQ=60)
       GGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCA                                                                                        >  SRR4302545.4675228/1‑94 (MQ=60)
       GGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCA                                                                                        <  SRR4302545.1592259/94‑1 (MQ=60)
       GGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCA                                                                                        >  SRR4302545.1507368/1‑94 (MQ=60)
       GGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCA                                                                                        >  SRR4302545.10057882/1‑94 (MQ=60)
       GGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCA                                                                                        <  SRR4302545.5997566/94‑1 (MQ=60)
        GTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAG                                                                                       <  SRR4302545.2295411/94‑1 (MQ=60)
        GTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAG                                                                                       <  SRR4302545.9457601/94‑1 (MQ=60)
        GTCATCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAG                                                                                       <  SRR4302545.1789858/94‑1 (MQ=60)
          CGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCA                                                                                     >  SRR4302545.4183589/1‑94 (MQ=60)
           GTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAA                                                                                    >  SRR4302545.5775763/1‑94 (MQ=60)
           GTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAA                                                                                    >  SRR4302545.7041857/1‑94 (MQ=60)
           GTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAAAACGTGCCACCATTTCCATCTCGAGATCAGTACCGGGCAGCGACAACGCACCGTCAGCAA                                                                                    >  SRR4302545.7420697/1‑94 (MQ=60)
            TCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAAC                                                                                   <  SRR4302545.5301965/94‑1 (MQ=60)
             CGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACC                                                                                  >  SRR4302545.5666691/1‑94 (MQ=60)
              GCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCT                                                                                 >  SRR4302545.7737507/1‑94 (MQ=60)
               CTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTG                                                                                >  SRR4302545.2533056/1‑94 (MQ=60)
               CTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTG                                                                                >  SRR4302545.1080181/1‑94 (MQ=60)
               CTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTG                                                                                >  SRR4302545.1462264/1‑94 (MQ=60)
                TCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGT                                                                               >  SRR4302545.8334459/1‑94 (MQ=60)
                CCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGT                                                                               <  SRR4302545.3834314/94‑1 (MQ=60)
                 CCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTA                                                                              >  SRR4302545.2752793/1‑94 (MQ=60)
                 CCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTA                                                                              >  SRR4302545.6603380/1‑94 (MQ=60)
                 CCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTA                                                                              >  SRR4302545.4970973/1‑94 (MQ=60)
                  CTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAA                                                                             <  SRR4302545.9569026/94‑1 (MQ=60)
                  CTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAA                                                                             <  SRR4302545.1990423/94‑1 (MQ=60)
                   TGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAAC                                                                            >  SRR4302545.9769012/1‑94 (MQ=60)
                   TGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAAA                                                                            >  SRR4302545.5473734/1‑94 (MQ=60)
                    GGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACA                                                                           <  SRR4302545.7426639/94‑1 (MQ=60)
                     GCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAG                                                                          >  SRR4302545.7312994/1‑94 (MQ=60)
                      CTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGC                                                                         <  SRR4302545.9577278/94‑1 (MQ=60)
                       TCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCA                                                                        <  SRR4302545.7931264/94‑1 (MQ=60)
                        CGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAG                                                                       >  SRR4302545.3738496/1‑94 (MQ=60)
                        CGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAG                                                                       >  SRR4302545.5316340/1‑94 (MQ=60)
                         GTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGA                                                                      >  SRR4302545.7015391/1‑94 (MQ=60)
                         GTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGA                                                                      >  SRR4302545.10021165/1‑94 (MQ=60)
                         GTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGA                                                                      <  SRR4302545.929899/94‑1 (MQ=60)
                          TGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGAT                                                                     <  SRR4302545.9781398/94‑1 (MQ=60)
                            TGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTA                                                                   >  SRR4302545.4600447/1‑94 (MQ=60)
                            TGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTA                                                                   >  SRR4302545.3314401/1‑94 (MQ=60)
                            TGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTA                                                                   >  SRR4302545.2939727/1‑94 (MQ=60)
                            TGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTA                                                                   <  SRR4302545.2920591/94‑1 (MQ=60)
                             GGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTAC                                                                  <  SRR4302545.9437525/94‑1 (MQ=60)
                             GGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTAC                                                                  >  SRR4302545.1661021/1‑94 (MQ=60)
                             GGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTAC                                                                  >  SRR4302545.5599159/1‑94 (MQ=60)
                              GCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACC                                                                 >  SRR4302545.5585651/1‑94 (MQ=60)
                               CTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTGCCG                                                                >  SRR4302545.8557270/1‑94 (MQ=60)
                               CTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCG                                                                <  SRR4302545.1144702/94‑1 (MQ=60)
                               CTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCG                                                                <  SRR4302545.4336220/94‑1 (MQ=60)
                                TGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGA                                                               >  SRR4302545.8995306/1‑94 (MQ=60)
                                TGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGA                                                               >  SRR4302545.9536448/1‑94 (MQ=60)
                                  AACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGA                                                             >  SRR4302545.8623920/1‑94 (MQ=60)
                                  AACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGA                                                             >  SRR4302545.1469316/1‑94 (MQ=60)
                                   ACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAA                                                            >  SRR4302545.638411/1‑94 (MQ=60)
                                   ACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAA                                                            >  SRR4302545.7358160/1‑94 (MQ=60)
                                    CCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAAT                                                           >  SRR4302545.10501960/1‑94 (MQ=60)
                                    CCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCAACGTCAGAAACCTGTAACAGCAGATTACCGAGAAT                                                           >  SRR4302545.10569931/1‑94 (MQ=60)
                                     CAGCGCAACCCGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATC                                                          <  SRR4302545.10096824/94‑1 (MQ=60)
                                     CAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATC                                                          <  SRR4302545.1303314/94‑1 (MQ=60)
                                     CAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATC                                                          >  SRR4302545.6495712/1‑94 (MQ=60)
                                     CAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATC                                                          <  SRR4302545.6303197/94‑1 (MQ=60)
                                      AGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTCTAACAGCAGATTACCGAGAATCG                                                         >  SRR4302545.6083635/1‑94 (MQ=60)
                                      AGCGAAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCG                                                         >  SRR4302545.5058291/1‑94 (MQ=60)
                                       GCGCAACCCGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGTACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGG                                                        >  SRR4302545.7648052/1‑94 (MQ=60)
                                       GCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGG                                                        <  SRR4302545.8380676/94‑1 (MQ=60)
                                       GCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGG                                                        <  SRR4302545.3801672/94‑1 (MQ=60)
                                        CGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGT                                                       >  SRR4302545.6252738/1‑94 (MQ=60)
                                         GCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTA                                                      <  SRR4302545.3679148/94‑1 (MQ=60)
                                         GCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTA                                                      <  SRR4302545.895902/94‑1 (MQ=60)
                                         GCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCAACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTA                                                      >  SRR4302545.10591893/1‑94 (MQ=60)
                                          CAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAG                                                     >  SRR4302545.7685659/1‑94 (MQ=60)
                                          CAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAG                                                     >  SRR4302545.5503863/1‑94 (MQ=60)
                                          CAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAG                                                     <  SRR4302545.8130081/94‑1 (MQ=60)
                                           AACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGC                                                    >  SRR4302545.7514940/1‑94 (MQ=60)
                                           AACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGC                                                    <  SRR4302545.4339738/94‑1 (MQ=60)
                                           AACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGC                                                    >  SRR4302545.4266662/1‑94 (MQ=60)
                                           AACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGC                                                    >  SRR4302545.2697841/1‑94 (MQ=60)
                                            ACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCG                                                   <  SRR4302545.8829702/94‑1 (MQ=60)
                                            ACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCAACGTCAGCAAACTGTAACAGCAGATTACCGAGAATCGGTAGCG                                                   >  SRR4302545.5724361/1‑94 (MQ=60)
                                             CACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGT                                                  >  SRR4302545.7258990/1‑94 (MQ=60)
                                             CACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGT                                                  >  SRR4302545.3054255/1‑94 (MQ=60)
                                             CACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGT                                                  <  SRR4302545.10532607/94‑1 (MQ=60)
                                               CGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAG                                                >  SRR4302545.2633399/1‑94 (MQ=60)
                                                GTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGG                                               <  SRR4302545.10317022/94‑1 (MQ=60)
                                                GTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGG                                               >  SRR4302545.10728467/1‑94 (MQ=60)
                                                GTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGG                                               >  SRR4302545.3578977/1‑94 (MQ=60)
                                                 TGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGA                                              <  SRR4302545.2228616/94‑1 (MQ=60)
                                                 TGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGA                                              <  SRR4302545.2423205/94‑1 (MQ=60)
                                                  GCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGAC                                             <  SRR4302545.5733255/94‑1 (MQ=60)
                                                  GCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGAC                                             >  SRR4302545.3091948/1‑94 (MQ=60)
                                                  GCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGAC                                             <  SRR4302545.5271663/94‑1 (MQ=60)
                                                   CCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACG                                            >  SRR4302545.732367/1‑94 (MQ=60)
                                                   CCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACG                                            <  SRR4302545.2090284/94‑1 (MQ=60)
                                                    CACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGA                                           >  SRR4302545.4635049/1‑94 (MQ=60)
                                                    CACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGA                                           >  SRR4302545.8471939/1‑94 (MQ=60)
                                                     ACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGAC                                          >  SRR4302545.6429762/1‑94 (MQ=60)
                                                      CCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACC                                         >  SRR4302545.9397282/1‑94 (MQ=60)
                                                       CATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCA                                        >  SRR4302545.3247805/1‑94 (MQ=60)
                                                       CATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCA                                        >  SRR4302545.7222597/1‑94 (MQ=60)
                                                       CATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCA                                        <  SRR4302545.3827007/94‑1 (MQ=60)
                                                       CATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCA                                        >  SRR4302545.286694/1‑94 (MQ=60)
                                                       CATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGAACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCA                                        >  SRR4302545.4316762/1‑94 (MQ=60)
                                                        ATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCAC                                       >  SRR4302545.1121138/1‑94 (MQ=60)
                                                        ATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCAC                                       >  SRR4302545.3542885/1‑94 (MQ=60)
                                                         TTTCCATCTCGAGATCAGTACCGGTCAGCGAAAACGAACCGTCAGCAACCTGTAACAGCAGATTAACGAGAATCGGTcgcgggggacgacccac                                      >  SRR4302545.7880555/1‑77 (MQ=60)
                                                         TTGCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACC                                      <  SRR4302545.5335438/94‑1 (MQ=60)
                                                          TTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCT                                     <  SRR4302545.5607422/94‑1 (MQ=60)
                                                            CCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAA                                   <  SRR4302545.9968916/94‑1 (MQ=60)
                                                            CCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAA                                   >  SRR4302545.6044127/1‑94 (MQ=60)
                                                            CCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAA                                   >  SRR4302545.4475849/1‑94 (MQ=60)
                                                             CATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAAC                                  <  SRR4302545.1004133/94‑1 (MQ=60)
                                                             CATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAAC                                  >  SRR4302545.3894017/1‑94 (MQ=60)
                                                             CATCTCGAGAGCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAAC                                  <  SRR4302545.5079468/94‑1 (MQ=60)
                                                              ATCTCGAGATCAGTGCCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACG                                 <  SRR4302545.9332586/94‑1 (MQ=60)
                                                              ATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACG                                 >  SRR4302545.7894292/1‑94 (MQ=60)
                                                              ATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACG                                 >  SRR4302545.7292493/1‑94 (MQ=60)
                                                              ATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACG                                 >  SRR4302545.784537/1‑94 (MQ=60)
                                                               TCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGG                                >  SRR4302545.9660860/1‑94 (MQ=60)
                                                               TCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGG                                <  SRR4302545.886551/94‑1 (MQ=60)
                                                                CTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGC                               >  SRR4302545.2312845/1‑94 (MQ=60)
                                                                CTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACAACCTAACGGA                               >  SRR4302545.3497179/1‑94 (MQ=60)
                                                                 TCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGAC                              <  SRR4302545.4860257/94‑1 (MQ=60)
                                                                 TCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGAC                              >  SRR4302545.9691811/1‑94 (MQ=60)
                                                                  CGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACC                             >  SRR4302545.9868488/1‑94 (MQ=60)
                                                                  CGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACC                             <  SRR4302545.907577/94‑1 (MQ=60)
                                                                  CGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACC                             >  SRR4302545.8361678/1‑94 (MQ=60)
                                                                  CGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACC                             <  SRR4302545.10324090/94‑1 (MQ=60)
                                                                   GAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCCCCTAACGGACCG                            <  SRR4302545.6752353/94‑1 (MQ=60)
                                                                    AGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGC                           >  SRR4302545.9492570/1‑94 (MQ=60)
                                                                    AGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGC                           >  SRR4302545.1614934/1‑94 (MQ=60)
                                                                     GATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGAacgcc                          >  SRR4302545.4064814/1‑89 (MQ=60)
                                                                     GATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCT                          >  SRR4302545.2483985/1‑94 (MQ=60)
                                                                      ATCAGTACCGGTCAGCGACAACGCCCCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTC                         <  SRR4302545.766768/94‑1 (MQ=60)
                                                                       TCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCC                        >  SRR4302545.2385399/1‑94 (MQ=60)
                                                                       TCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCA                        <  SRR4302545.328293/94‑1 (MQ=60)
                                                                         AGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACC                      >  SRR4302545.8099977/1‑94 (MQ=60)
                                                                           TACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTG                    >  SRR4302545.7402618/1‑94 (MQ=60)
                                                                            ACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGT                   <  SRR4302545.6597283/94‑1 (MQ=60)
                                                                            ACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGT                   <  SRR4302545.2786226/94‑1 (MQ=60)
                                                                             CCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTT                  <  SRR4302545.10218611/94‑1 (MQ=60)
                                                                             CCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTT                  <  SRR4302545.415196/94‑1 (MQ=60)
                                                                             CCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTT                  <  SRR4302545.923682/94‑1 (MQ=60)
                                                                             CCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTT                  <  SRR4302545.3474797/94‑1 (MQ=60)
                                                                             CCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAAAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTT                  <  SRR4302545.9903455/94‑1 (MQ=60)
                                                                              CGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTG                 <  SRR4302545.10869041/94‑1 (MQ=60)
                                                                              CGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTG                 <  SRR4302545.454634/94‑1 (MQ=60)
                                                                               TGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGT                >  SRR4302545.2237726/1‑94 (MQ=60)
                                                                               GGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCATATTACCGAGAATCGGTAGCGTAGGACGACCGCCTAACGGACCGCTCACCTGTTGT                <  SRR4302545.5706649/94‑1 (MQ=60)
                                                                               GGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGT                >  SRR4302545.7140299/1‑94 (MQ=60)
                                                                               GGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGT                <  SRR4302545.10561851/94‑1 (MQ=60)
                                                                               GGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGT                >  SRR4302545.2528128/1‑94 (MQ=60)
                                                                               GGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGT                <  SRR4302545.10139979/94‑1 (MQ=60)
                                                                               GGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGT                <  SRR4302545.7168978/94‑1 (MQ=60)
                                                                                GTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTA               <  SRR4302545.1632697/94‑1 (MQ=60)
                                                                                  GAGCGACAACGCAGCGTCAGCACCTTGTAACAGCAGATTGCCGAGAATGGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGC             <  SRR4302545.3959873/94‑1 (MQ=60)
                                                                                  CAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCGCCTAACGGACCGCTCACCTGTTGTAGC             <  SRR4302545.1951980/94‑1 (MQ=60)
                                                                                   AGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCG            >  SRR4302545.9419120/1‑94 (MQ=60)
                                                                                    GCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGG           >  SRR4302545.10886196/1‑94 (MQ=60)
                                                                                     CGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGT          <  SRR4302545.8222067/94‑1 (MQ=60)
                                                                                     CGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGT          >  SRR4302545.4782395/1‑94 (MQ=60)
                                                                                      GACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTT         >  SRR4302545.5438268/1‑94 (MQ=60)
                                                                                      GACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGCT         >  SRR4302545.5095949/1‑94 (MQ=60)
                                                                                       ACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTT        <  SRR4302545.2567417/94‑1 (MQ=60)
                                                                                       ACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTT        <  SRR4302545.4217590/94‑1 (MQ=60)
                                                                                       ACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTT        <  SRR4302545.8761811/94‑1 (MQ=60)
                                                                                        CAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTT       >  SRR4302545.84990/1‑94 (MQ=60)
                                                                                        CAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTT       >  SRR4302545.1777356/1‑94 (MQ=60)
                                                                                         AACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTA      >  SRR4302545.2262190/1‑94 (MQ=60)
                                                                                          ACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAA     <  SRR4302545.10644178/94‑1 (MQ=60)
                                                                                           CGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAAT    >  SRR4302545.8431073/1‑94 (MQ=60)
                                                                                           CGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAAT    <  SRR4302545.5888797/94‑1 (MQ=60)
                                                                                            GCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGATGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATA   <  SRR4302545.3772637/94‑1 (MQ=60)
                                                                                            GCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATA   >  SRR4302545.10380624/1‑94 (MQ=60)
                                                                                            GCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATA   <  SRR4302545.1231932/94‑1 (MQ=60)
                                                                                            GCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATA   >  SRR4302545.1401931/1‑94 (MQ=60)
                                                                                            GCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATA   >  SRR4302545.6637097/1‑94 (MQ=60)
                                                                                             CACCGTCAGCAGCCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACTACCACCTAACGGACCGCTCGCCTGTTGTAGCGGTTTTAATAA  <  SRR4302545.5093411/94‑1 (MQ=60)
                                                                                             CACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATAA  >  SRR4302545.6420397/1‑94 (MQ=60)
                                                                                             CACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGGTTTAATAA  >  SRR4302545.387590/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCGGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGTACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATAA  >  NC_000913/3879736‑3879922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑