Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,879,829 T→C T41A (ACG→GCG)  dnaN ← DNA polymerase III beta‑subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,879,8290TC99.6% 785.4 / NA 228T41A (ACG→GCG) dnaNDNA polymerase III beta‑subunit
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (113/114);  minor base G (1/0);  total (114/114)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 242 total aligned reads displayed.

GAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGTACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTA  >  NC_000913/3879739‑3879918
                                                                                          |                                                                                         
 aaCGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCAcc                                                                                        >  2:5026991/1‑93 (MQ=255)
 aaCGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCAcc                                                                                        <  2:3160444/93‑1 (MQ=255)
   cGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGt                                                                                      <  2:556413/93‑1 (MQ=255)
      tcgtcgCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCGGCGACAACGGACCGTCAg                                                                                   >  2:4600064/1‑93 (MQ=255)
       cgtcgCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGc                                                                                  <  2:4962851/93‑1 (MQ=255)
         tcgCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCaa                                                                                >  1:5393954/1‑93 (MQ=255)
         tcgCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCaa                                                                                <  1:4309925/93‑1 (MQ=255)
         tcgCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCaa                                                                                >  2:2905603/1‑93 (MQ=255)
         tcgCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCaa                                                                                >  1:3918998/1‑93 (MQ=255)
         tcgCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGGCAGCaa                                                                                >  1:7169/1‑93 (MQ=255)
          cgCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAAc                                                                               >  1:5310492/1‑93 (MQ=255)
           gCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAAcc                                                                              <  1:1127984/93‑1 (MQ=255)
           gCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAAcc                                                                              >  2:4763321/1‑93 (MQ=255)
            cTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCt                                                                             <  2:1005592/93‑1 (MQ=255)
             tCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTg                                                                            <  1:5531361/93‑1 (MQ=255)
             tCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTg                                                                            >  2:2289143/1‑93 (MQ=255)
              ccTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCGCCGTCAGCAACCTGt                                                                           <  2:5376998/93‑1 (MQ=255)
               cTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTa                                                                          >  2:5415917/1‑93 (MQ=255)
                 ggCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAAc                                                                        <  2:5616660/93‑1 (MQ=255)
                 ggCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAAc                                                                        >  2:2652853/1‑93 (MQ=255)
                    tCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAAcagc                                                                     <  2:3578021/93‑1 (MQ=255)
                      gtgtGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAAcagcag                                                                   >  1:5042977/1‑93 (MQ=255)
                       tgtgGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGa                                                                  >  2:5786267/1‑93 (MQ=255)
                       tgtgGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGa                                                                  <  1:4080867/93‑1 (MQ=255)
                       tgtgGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGa                                                                  >  1:309945/1‑93 (MQ=255)
                        gtgGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCACTACCGGCCAGCGACAACGACCAGCAAGCAACTTGTAAAAGAAGAt                                                                 >  2:3693398/1‑93 (MQ=255)
                        ggaacTGAACCAGCGCATCACGGGCCACCATTTCCATCTCGAGATCAGTGCCGGTCAGCGACAACGCACCGTCAGCAACCTGGAACAGCAGAt                                                                 <  2:944439/89‑1 (MQ=255)
                         tgGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTGCCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGAtt                                                                <  1:2384053/93‑1 (MQ=255)
                         tgGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGCtt                                                                >  2:1064380/1‑93 (MQ=255)
                         tgGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGAtt                                                                >  2:6416641/1‑93 (MQ=255)
                            cTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTAcc                                                             <  1:5281478/93‑1 (MQ=255)
                             tGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCg                                                            >  2:490777/1‑93 (MQ=255)
                              gAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCga                                                           >  2:148833/1‑93 (MQ=255)
                              gAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCga                                                           >  2:4271435/1‑93 (MQ=255)
                                 ccAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGaa                                                        <  1:3311414/93‑1 (MQ=255)
                                 ccAGCGCAACACGTACCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGaa                                                        <  2:4252652/93‑1 (MQ=255)
                                   aGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATc                                                      <  2:2188588/93‑1 (MQ=255)
                                   aGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATc                                                      <  2:6362839/93‑1 (MQ=255)
                                    gcgcAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCg                                                     <  2:3269340/93‑1 (MQ=255)
                                    gcgcAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCg                                                     >  2:3056522/1‑93 (MQ=255)
                                      gcAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGt                                                   <  1:1529693/93‑1 (MQ=255)
                                      gcAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGt                                                   <  1:563922/93‑1 (MQ=255)
                                       cAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTa                                                  <  1:1043460/93‑1 (MQ=255)
                                        aaCACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAg                                                 >  1:1162928/1‑93 (MQ=255)
                                             gTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCTGATTACCGAGAATCGGTAGCGTAg                                            >  2:5636479/1‑93 (MQ=255)
                                             gTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAg                                            <  2:5518246/93‑1 (MQ=255)
                                               gCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGga                                          <  1:4978215/93‑1 (MQ=255)
                                               gCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGga                                          <  2:247068/93‑1 (MQ=255)
                                                ccaccaTTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGgac                                         >  1:4350115/1‑93 (MQ=255)
                                                ccaccaTTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGgac                                         >  2:4034743/1‑93 (MQ=255)
                                                ccaccaTTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGgac                                         >  2:346239/1‑93 (MQ=255)
                                                  accaTTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGgacga                                       >  2:1197651/1‑93 (MQ=255)
                                                  accaTTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGgacga                                       >  1:2898238/1‑93 (MQ=255)
                                                  accaTTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGgacga                                       <  1:3415872/93‑1 (MQ=255)
                                                  accaTTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGgacga                                       <  1:6147410/93‑1 (MQ=255)
                                                   ccaTTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGgacgac                                      <  2:1363532/93‑1 (MQ=255)
                                                   ccaTTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGgacgac                                      >  1:3142683/1‑93 (MQ=255)
                                                     aTTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGacca                                    >  2:436635/1‑93 (MQ=255)
                                                       ttCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTAACGAGAATCGGTAGCGTAGGACGacaacc                                  >  2:1215962/1‑93 (MQ=255)
                                                        tCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCt                                 >  1:5556813/1‑93 (MQ=255)
                                                         ccATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTa                                >  1:2187121/1‑93 (MQ=255)
                                                               cGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGAc                          <  2:974782/93‑1 (MQ=255)
                                                               cGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGAc                          <  2:2390974/93‑1 (MQ=255)
                                                               cGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGAc                          <  2:1668555/93‑1 (MQ=255)
                                                               cGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGAc                          >  1:6106465/1‑93 (MQ=255)
                                                                 agaTCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCg                        >  2:5365049/1‑93 (MQ=255)
                                                                 agaTCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCg                        >  2:4866964/1‑93 (MQ=255)
                                                                   aTCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGcc                      >  1:6463043/1‑92 (MQ=255)
                                                                   aTCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCt                      >  1:6281148/1‑93 (MQ=255)
                                                                    tCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTc                     >  1:1144040/1‑93 (MQ=255)
                                                                    tCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTc                     <  1:5953729/93‑1 (MQ=255)
                                                                     cAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCa                    >  2:4714385/1‑93 (MQ=255)
                                                                      aGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCAc                   <  2:4242087/93‑1 (MQ=255)
                                                                       gTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCAcc                  >  1:4630684/1‑93 (MQ=255)
                                                                       gTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCAcc                  >  1:3798602/1‑93 (MQ=255)
                                                                        tACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCt                 >  2:2115756/1‑93 (MQ=255)
                                                                         aCCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCtg                <  1:4497832/93‑1 (MQ=255)
                                                                         aCCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCtg                <  2:5073750/93‑1 (MQ=255)
                                                                          ccGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCtgt               <  2:2828051/93‑1 (MQ=255)
                                                                            ggTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCtgttg             >  2:397348/1‑93 (MQ=255)
                                                                             gTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCtgttgt            <  2:3945489/93‑1 (MQ=255)
                                                                             gTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCtgttgt            <  2:6238298/93‑1 (MQ=255)
                                                                              tCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTa           <  1:4929539/93‑1 (MQ=255)
                                                                              tCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTa           <  1:4797386/93‑1 (MQ=255)
                                                                              tCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTa           <  1:1572953/93‑1 (MQ=255)
                                                                              tCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTa           >  1:4572782/1‑93 (MQ=255)
                                                                               cAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAg          <  2:3349986/93‑1 (MQ=255)
                                                                               cAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAg          <  1:3475528/93‑1 (MQ=255)
                                                                                aGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGc         >  1:1771303/1‑93 (MQ=255)
                                                                                 gCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCg        >  1:5869445/1‑93 (MQ=255)
                                                                                 gCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCg        <  1:4187372/93‑1 (MQ=255)
                                                                                 gCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCg        <  1:1322933/93‑1 (MQ=255)
                                                                                  cGACAACGCACCGTCAGCATCCTGTAACAGCAGATTCCGGAGAATCGGTAGCGTAGGGCGACCACCTAACGGACCGCTCACCTGTTGTAGCgg       <  1:82053/93‑1 (MQ=255)
                                                                                  cGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCgg       <  1:3843628/93‑1 (MQ=255)
                                                                                  cGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCgg       <  1:6250954/93‑1 (MQ=255)
                                                                                    aCAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGtt     <  2:4724745/93‑1 (MQ=255)
                                                                                      aaCGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGtttt   >  2:6069353/1‑93 (MQ=255)
                                                                                       aCGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTta  >  1:2752960/1‑93 (MQ=255)
                                                                                       aCGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTta  <  2:1456221/93‑1 (MQ=255)
                                                                                       aCGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTta  <  2:1857580/93‑1 (MQ=255)
                                                                                          |                                                                                         
GAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGTACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTA  >  NC_000913/3879739‑3879918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGTACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATAA  >  NC_000913/3879736‑3879922
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CCGGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGC                                                                                               <  SRR4302537.3875863/94‑1 (MQ=60)
 CGGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCA                                                                                              >  SRR4302537.372867/1‑94 (MQ=60)
  GGAACGGTCGTCGCTCCTGGCTCGTGTGTCTGAACCAGCGCAACACGTGCCTCCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCAC                                                                                             <  SRR4302537.3398121/94‑1 (MQ=60)
  GGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCAC                                                                                             <  SRR4302537.1658061/94‑1 (MQ=60)
   GAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCGACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACC                                                                                            >  SRR4302537.4701227/1‑94 (MQ=60)
    AACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCG                                                                                           >  SRR4302537.1582823/1‑94 (MQ=60)
     ACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGT                                                                                          >  SRR4302537.4815265/1‑94 (MQ=60)
      CGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTC                                                                                         >  SRR4302537.5377645/1‑94 (MQ=60)
        GTCGTCGCTCCTGGCTAGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCAAGATCAGTACCGGTCAGCGACAACGCACCGTCAG                                                                                       <  SRR4302537.6152376/94‑1 (MQ=60)
          CGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCA                                                                                     >  SRR4302537.1511425/1‑94 (MQ=60)
           GTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAA                                                                                    >  SRR4302537.3946391/1‑94 (MQ=60)
           GTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAA                                                                                    >  SRR4302537.1158910/1‑94 (MQ=60)
           GTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAA                                                                                    >  SRR4302537.5430791/1‑94 (MQ=60)
           GTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGGCAGCAA                                                                                    >  SRR4302537.7220/1‑94 (MQ=60)
            TCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAAC                                                                                   <  SRR4302537.4339880/94‑1 (MQ=60)
            TCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAAC                                                                                   >  SRR4302537.5346974/1‑94 (MQ=60)
            TCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAAC                                                                                   >  SRR4302537.5580642/1‑94 (MQ=60)
             CGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACC                                                                                  >  SRR4302537.495659/1‑94 (MQ=60)
              GCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCT                                                                                 <  SRR4302537.1135810/94‑1 (MQ=60)
              GCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCT                                                                                 >  SRR4302537.4580750/1‑94 (MQ=60)
               CTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTG                                                                                <  SRR4302537.5254088/94‑1 (MQ=60)
               CTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTG                                                                                <  SRR4302537.5744127/94‑1 (MQ=60)
                TCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGT                                                                               <  SRR4302537.5569122/94‑1 (MQ=60)
                   TGGCTGGTGTGGCTGAACCAGAGAAACACTTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAAC                                                                            <  SRR4302537.1145516/94‑1 (MQ=60)
                    GGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACA                                                                           >  SRR4302537.367561/1‑94 (MQ=60)
                      CTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGC                                                                         >  SRR4302537.3375607/1‑94 (MQ=60)
                        CGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAG                                                                       >  SRR4302537.5077706/1‑94 (MQ=60)
                         GTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGA                                                                      <  SRR4302537.3133320/94‑1 (MQ=60)
                         GTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGA                                                                      >  SRR4302537.312091/1‑94 (MQ=60)
                         GTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGA                                                                      <  SRR4302537.115710/94‑1 (MQ=60)
                          TGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGAT                                                                     <  SRR4302537.4109354/94‑1 (MQ=60)
                           GTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATT                                                                    >  SRR4302537.3953607/1‑94 (MQ=60)
                            TGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTGCCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTA                                                                   <  SRR4302537.2400846/94‑1 (MQ=60)
                            TGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTA                                                                   >  SRR4302537.6224925/1‑94 (MQ=60)
                             GGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTAC                                                                  <  SRR4302537.3463013/94‑1 (MQ=60)
                              GCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACC                                                                 <  SRR4302537.4623116/94‑1 (MQ=60)
                               CTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCG                                                                <  SRR4302537.5317808/94‑1 (MQ=60)
                               CTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCG                                                                >  SRR4302537.4342753/1‑94 (MQ=60)
                                   ACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAA                                                            <  SRR4302537.986417/94‑1 (MQ=60)
                                    CCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAAT                                                           <  SRR4302537.3334839/94‑1 (MQ=60)
                                     CAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATC                                                          >  SRR4302537.448893/1‑94 (MQ=60)
                                      AGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCG                                                         <  SRR4302537.6511223/94‑1 (MQ=60)
                                        CGCAAAACGTGACACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGT                                                       <  SRR4302537.1461335/94‑1 (MQ=60)
                                         GCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTA                                                      <  SRR4302537.567800/94‑1 (MQ=60)
                                         GCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTA                                                      <  SRR4302537.1540383/94‑1 (MQ=60)
                                          CAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAG                                                     <  SRR4302537.1050663/94‑1 (MQ=60)
                                          CAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAG                                                     >  SRR4302537.1171015/1‑94 (MQ=60)
                                           AACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGC                                                    >  SRR4302537.5017638/1‑94 (MQ=60)
                                           AACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGCAGC                                                    >  SRR4302537.1919174/1‑94 (MQ=60)
                                             CACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGT                                                  <  SRR4302537.428542/94‑1 (MQ=60)
                                                  GCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGAC                                             <  SRR4302537.5012529/94‑1 (MQ=60)
                                                  GCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGAC                                             >  SRR4302537.4380254/1‑94 (MQ=60)
                                                    CACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGA                                           >  SRR4302537.6449901/1‑94 (MQ=60)
                                                    CACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGA                                           >  SRR4302537.2918603/1‑94 (MQ=60)
                                                     ACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGAC                                          <  SRR4302537.3440057/94‑1 (MQ=60)
                                                     ACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGAC                                          <  SRR4302537.6189693/94‑1 (MQ=60)
                                                     ACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGAC                                          >  SRR4302537.3164741/1‑94 (MQ=60)
                                                      CCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACC                                         <  SRR4302537.3048834/94‑1 (MQ=60)
                                                       CATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCA                                        >  SRR4302537.6133713/1‑94 (MQ=60)
                                                        ATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCAC                                       <  SRR4302537.3865051/94‑1 (MQ=60)
                                                          TTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCT                                     >  SRR4302537.5201386/1‑94 (MQ=60)
                                                          TTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCT                                     >  SRR4302537.5981635/1‑94 (MQ=60)
                                                          TTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCT                                     >  SRR4302537.4476369/1‑94 (MQ=60)
                                                          TTCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCT                                     >  SRR4302537.5594780/1‑94 (MQ=60)
                                                           TCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTA                                    <  SRR4302537.2660274/94‑1 (MQ=60)
                                                           TCCATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTA                                    >  SRR4302537.2202530/1‑94 (MQ=60)
                                                             CATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAAC                                  >  SRR4302537.4098642/1‑94 (MQ=60)
                                                             CATCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAAC                                  >  SRR4302537.75507/1‑94 (MQ=60)
                                                               TCTCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGG                                <  SRR4302537.3729808/94‑1 (MQ=60)
                                                                 TCGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGAC                              >  SRR4302537.6148422/1‑94 (MQ=60)
                                                                  CGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACC                             <  SRR4302537.6233251/94‑1 (MQ=60)
                                                                  CGAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACC                             >  SRR4302537.2268261/1‑94 (MQ=60)
                                                                   GAGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCG                            >  SRR4302537.1099392/1‑94 (MQ=60)
                                                                    AGATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGC                           >  SRR4302537.6086546/1‑94 (MQ=60)
                                                                     GATCAGTGCCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCT                          <  SRR4302537.5564453/94‑1 (MQ=60)
                                                                     GATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCT                          >  SRR4302537.6324226/1‑94 (MQ=60)
                                                                     GATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCC                          >  SRR4302537.6506829/1‑94 (MQ=60)
                                                                      ATCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTC                         >  SRR4302537.1151995/1‑94 (MQ=60)
                                                                       TCAGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCA                        <  SRR4302537.5994602/94‑1 (MQ=60)
                                                                         AGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACC                      >  SRR4302537.4662720/1‑94 (MQ=60)
                                                                         AGTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACC                      >  SRR4302537.3825252/1‑94 (MQ=60)
                                                                          GTACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCT                     <  SRR4302537.4147857/94‑1 (MQ=60)
                                                                           TACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTG                    <  SRR4302537.2490192/94‑1 (MQ=60)
                                                                           TACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTG                    >  SRR4302537.1224600/1‑94 (MQ=60)
                                                                            ACCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGT                   <  SRR4302537.4528944/94‑1 (MQ=60)
                                                                             CCGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTT                  <  SRR4302537.3894324/94‑1 (MQ=60)
                                                                              CGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTG                 <  SRR4302537.4326007/94‑1 (MQ=60)
                                                                              CGGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTG                 <  SRR4302537.3282390/94‑1 (MQ=60)
                                                                               GGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGT                >  SRR4302537.5502548/1‑94 (MQ=60)
                                                                               GGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGT                >  SRR4302537.988425/1‑94 (MQ=60)
                                                                               GGTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGT                <  SRR4302537.5328170/94‑1 (MQ=60)
                                                                                GTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTA               >  SRR4302537.4604434/1‑94 (MQ=60)
                                                                                GTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTA               >  SRR4302537.2151463/1‑94 (MQ=60)
                                                                                GTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTA               >  SRR4302537.2809352/1‑94 (MQ=60)
                                                                                GTCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTA               >  SRR4302537.2946776/1‑94 (MQ=60)
                                                                                 TCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAG              <  SRR4302537.4830489/94‑1 (MQ=60)
                                                                                 TCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAG              <  SRR4302537.4963520/94‑1 (MQ=60)
                                                                                 TCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAG              >  SRR4302537.4989228/1‑94 (MQ=60)
                                                                                 TCAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAG              <  SRR4302537.1583927/94‑1 (MQ=60)
                                                                                  CAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGC             <  SRR4302537.3500121/94‑1 (MQ=60)
                                                                                  CAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGC             >  SRR4302537.1783637/1‑94 (MQ=60)
                                                                                  CAGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGC             <  SRR4302537.6309538/94‑1 (MQ=60)
                                                                                   AGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCG            >  SRR4302537.5909708/1‑94 (MQ=60)
                                                                                   AGCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCG            <  SRR4302537.4979166/94‑1 (MQ=60)
                                                                                   AGCGACAACGCACCGACAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCG            <  SRR4302537.3366414/94‑1 (MQ=60)
                                                                                    GCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTGCCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGG           >  SRR4302537.6489517/1‑94 (MQ=60)
                                                                                    GCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGG           <  SRR4302537.4216610/94‑1 (MQ=60)
                                                                                    GCGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGG           <  SRR4302537.1332156/94‑1 (MQ=60)
                                                                                     CGACAACGCACCGTCAGCATCCTGTAACAGCAGATTCCGGAGAATCGGTAGCGTAGGGCGACCACCTAACGGACCGCTCACCTGTTGTAGCGGT          <  SRR4302537.82654/94‑1 (MQ=60)
                                                                                     CGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGT          <  SRR4302537.6293897/94‑1 (MQ=60)
                                                                                     CGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGT          <  SRR4302537.3870545/94‑1 (MQ=60)
                                                                                     CGACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGT          <  SRR4302537.5605747/94‑1 (MQ=60)
                                                                                      GACAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTT         <  SRR4302537.5619555/94‑1 (MQ=60)
                                                                                        CAACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTT       >  SRR4302537.1673731/1‑94 (MQ=60)
                                                                                         AACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTA      >  SRR4302537.2772173/1‑94 (MQ=60)
                                                                                          ACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAA     >  SRR4302537.5068002/1‑94 (MQ=60)
                                                                                          ACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAA     >  SRR4302537.650574/1‑94 (MQ=60)
                                                                                          ACGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAA     >  SRR4302537.5521681/1‑94 (MQ=60)
                                                                                           CGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAAT    <  SRR4302537.179044/94‑1 (MQ=60)
                                                                                           CGCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAAT    <  SRR4302537.5370265/94‑1 (MQ=60)
                                                                                            GCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATA   >  SRR4302537.1470956/1‑94 (MQ=60)
                                                                                            GCACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATA   <  SRR4302537.2607839/94‑1 (MQ=60)
                                                                                             CACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATAA  <  SRR4302537.4116366/94‑1 (MQ=60)
                                                                                             CACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATAA  >  SRR4302537.5208327/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCGGAACGGTCGTCGCTCCTGGCTCGTGTGGCTGAACCAGCGCAACACGTGCCACCATTTCCATCTCGAGATCAGTACCGGTCAGCGACAACGTACCGTCAGCAACCTGTAACAGCAGATTACCGAGAATCGGTAGCGTAGGACGACCACCTAACGGACCGCTCACCTGTTGTAGCGGTTTTAATAA  >  NC_000913/3879736‑3879922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑