Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,457,218	T→C	C415R (TGC→CGC)	yheG →	YheG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,457,218	0	T	C	100.0%	756.9 / NA	218	C415R (TGC→CGC)	yheG	YheG
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (116/102); total (116/102)

Only 100 of 226 total aligned reads displayed.

TGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCAT  >  NC_000913/3457128‑3457307

 gCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGgccgcc                                                                                        >  1:4125906/1‑93 (MQ=255)

    gACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTc                                                                                     >  2:673664/1‑93 (MQ=255)

     aCAATTCACGCCCGTATCACGCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGAACTCCCGTAGGCCGCGCTCa                                                                                    >  2:5911764/1‑93 (MQ=255)

     aCAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCa                                                                                    <  2:3286312/93‑1 (MQ=255)

      cAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCAt                                                                                   >  2:2125114/1‑93 (MQ=255)

      cAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCAt                                                                                   <  1:2897695/93‑1 (MQ=255)

      cAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCAt                                                                                   <  1:6399602/93‑1 (MQ=255)

       aaTTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCAtt                                                                                  >  1:482655/1‑93 (MQ=255)

          tCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGcc                                                                               <  2:4880753/93‑1 (MQ=255)

            aCGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCAt                                                                             >  1:2296906/1‑93 (MQ=255)

             cGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATc                                                                            >  2:3104378/1‑93 (MQ=255)

              gCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCa                                                                           <  1:5906273/93‑1 (MQ=255)

              gCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCa                                                                           <  2:11218/93‑1 (MQ=255)

               cccGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCaa                                                                          <  2:1688842/93‑1 (MQ=255)

                ccGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAAt                                                                         >  2:4623473/1‑93 (MQ=255)

                 cGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATc                                                                        >  2:6155372/1‑93 (MQ=255)

                 cGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATc                                                                        >  2:2315063/1‑93 (MQ=255)

                 cGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATc                                                                        <  1:5613263/93‑1 (MQ=255)

                  gTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATcc                                                                       <  2:5329718/93‑1 (MQ=255)

                  gTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATcc                                                                       >  1:1220509/1‑93 (MQ=255)

                    aTCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCgg                                                                     >  2:1972226/1‑93 (MQ=255)

                     tCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGc                                                                    <  1:845304/93‑1 (MQ=255)

                        ccccAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTAt                                                                 <  1:1174333/93‑1 (MQ=255)

                         cccAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATc                                                                >  1:2076250/1‑93 (MQ=255)

                          ccAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCa                                                               >  1:2565657/1‑93 (MQ=255)

                           caacaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAg                                                              <  1:242655/93‑1 (MQ=255)

                            aacaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAgg                                                             >  1:314698/1‑93 (MQ=255)

                            aacaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAgg                                                             >  2:4170780/1‑93 (MQ=255)

                            aacaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAgg                                                             <  1:2380377/93‑1 (MQ=255)

                             acaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAggg                                                            >  2:2568586/1‑93 (MQ=255)

                             acaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAggg                                                            <  1:3022718/93‑1 (MQ=255)

                             acaaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAggg                                                            >  1:6069940/1‑93 (MQ=255)

                              caaGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAgggg                                                           <  2:5066978/93‑1 (MQ=255)

                                aGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGgcg                                                         >  1:3649572/1‑93 (MQ=255)

                                aGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGgcg                                                         <  2:2987060/93‑1 (MQ=255)

                                aGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGgcg                                                         >  1:104110/1‑93 (MQ=255)

                                 gcgcAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGgcgc                                                        >  1:959567/1‑93 (MQ=255)

                                 gcgcAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGgcgc                                                        >  2:932021/1‑93 (MQ=255)

                                 gcgcAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCCGCTATCAGCGgcgc                                                        >  2:5623989/1‑93 (MQ=255)

                                   gcAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCAt                                                      <  1:5454257/93‑1 (MQ=255)

                                   gcAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCAt                                                      >  2:4905814/1‑93 (MQ=255)

                                    cAGATGTTTAAATATCATCATCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATg                                                     <  2:1339460/93‑1 (MQ=255)

                                    cAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATg                                                     >  1:1820861/1‑93 (MQ=255)

                                      gATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTTCCATCAATCCGGCTATCAGGGGCGCATGGc                                                   >  2:6181204/1‑93 (MQ=255)

                                      gATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGc                                                   >  2:633901/1‑93 (MQ=255)

                                         gTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGAt                                                >  2:3653892/1‑93 (MQ=255)

                                          tttAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATc                                               >  1:2258562/1‑93 (MQ=255)

                                          tttAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATc                                               >  2:2357936/1‑93 (MQ=255)

                                            tAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCACTCCGGCTATCATGGGCGCATGGCGATccc                                             >  1:1544311/1‑92 (MQ=255)

                                             aaaTATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCAc                                            <  2:5484645/93‑1 (MQ=255)

                                              aaTATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACg                                           <  1:1778581/93‑1 (MQ=255)

                                               atatCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGa                                          <  1:5142159/93‑1 (MQ=255)

                                                 atcatcAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGaaa                                        <  2:5545744/93‑1 (MQ=255)

                                                 atcatcAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGaaa                                        >  2:5209968/1‑93 (MQ=255)

                                                 atcatcAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGaaa                                        <  2:5661226/93‑1 (MQ=255)

                                                  tcatcaGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAat                                       >  1:79353/1‑93 (MQ=255)

                                                  tcatcaGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAat                                       >  2:5863933/1‑93 (MQ=255)

                                                  tcatcaGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAat                                       >  2:6039229/1‑93 (MQ=255)

                                                  tcatcaGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAat                                       <  1:2815340/93‑1 (MQ=255)

                                                    atcaGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAatga                                     >  2:2648560/1‑93 (MQ=255)

                                                     tcaGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAatgat                                    <  2:4959007/93‑1 (MQ=255)

                                                     tcaGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAatgat                                    >  1:6371839/1‑93 (MQ=255)

                                                     tcaGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAatgat                                    <  2:2888172/93‑1 (MQ=255)

                                                      caGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAatgatg                                   <  1:6183602/93‑1 (MQ=255)

                                                       aGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATACACGAAATGAtgg                                  <  2:4763451/93‑1 (MQ=255)

                                                        gCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGAtggt                                 <  2:4130219/93‑1 (MQ=255)

                                                        gCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGAtggg                                 >  1:2860141/1‑92 (MQ=255)

                                                           cgcgGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATggtggt                              <  1:588027/93‑1 (MQ=255)

                                                           cgcgGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATggtggt                              <  1:1957775/93‑1 (MQ=255)

                                                             cgGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGa                            >  2:850515/1‑93 (MQ=255)

                                                                tGACAACAATTGTCCCTCCCGTAGCCCGCCCTCATTGCCATCAAACCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGc                         <  2:1620292/93‑1 (MQ=255)

                                                                tGACAACAATTGGCCCTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGTCGATCCACGAAATGATGGTGGTGACGc                         <  2:1406868/93‑1 (MQ=255)

                                                                tGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGc                         <  1:5985452/93‑1 (MQ=255)

                                                                 gACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGcc                        >  2:6244724/1‑93 (MQ=255)

                                                                  acaacaATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCg                       >  2:5950580/1‑93 (MQ=255)

                                                                   caacaaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCgg                      <  2:1866877/93‑1 (MQ=255)

                                                                   caacaaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGAAGCCgg                      <  1:442564/93‑1 (MQ=255)

                                                                    aacaaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGa                     >  1:3372984/1‑93 (MQ=255)

                                                                    aacaaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGa                     >  1:2007625/1‑93 (MQ=255)

                                                                     acaaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGaa                    <  1:1314997/93‑1 (MQ=255)

                                                                     acaaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGaa                    >  1:6331657/1‑93 (MQ=255)

                                                                     acaaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGaa                    >  2:2425193/1‑93 (MQ=255)

                                                                      caaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAAt                   >  2:2469302/1‑93 (MQ=255)

                                                                       aaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAAtt                  >  1:4572865/1‑93 (MQ=255)

                                                                       aaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAAtt                  <  1:5426019/93‑1 (MQ=255)

                                                                       aaTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAAtt                  >  2:5738844/1‑93 (MQ=255)

                                                                        aTTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTa                 <  2:3534516/93‑1 (MQ=255)

                                                                         ttGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTAc                <  1:4460352/93‑1 (MQ=255)

                                                                         ttGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTAc                <  1:5264460/93‑1 (MQ=255)

                                                                          tGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACg               >  1:4321597/1‑93 (MQ=255)

                                                                          tGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACg               <  1:1570385/93‑1 (MQ=255)

                                                                          tGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACg               <  1:6379728/93‑1 (MQ=255)

                                                                             cACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGc            >  1:5578139/1‑93 (MQ=255)

                                                                               cTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCg          >  1:3873581/1‑93 (MQ=255)

                                                                                 cccGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCt        >  1:3438839/1‑93 (MQ=255)

                                                                                 cccGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCt        <  1:505275/93‑1 (MQ=255)

                                                                                    gTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTAtt     <  1:4569382/93‑1 (MQ=255)

                                                                                    gTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTAtt     >  2:3426353/1‑93 (MQ=255)

                                                                                      aGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCCTGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCa   <  2:378590/93‑1 (MQ=255)

                                                                                      aGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCa   <  2:2994666/93‑1 (MQ=255)

TGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCAT  >  NC_000913/3457128‑3457307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAA  >  NC_000913/3457126‑3457311

AATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCG                                                                                              >  SRR4302537.2170192/1‑94 (MQ=60)

 ATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGC                                                                                             >  SRR4302537.3520454/1‑94 (MQ=60)

  TGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCC                                                                                            >  SRR4302537.4154707/1‑94 (MQ=60)

    CCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCT                                                                                          <  SRR4302537.2007370/94‑1 (MQ=60)

     CGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTC                                                                                         <  SRR4302537.3111068/94‑1 (MQ=60)

      GACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCA                                                                                        >  SRR4302537.959359/1‑94 (MQ=60)

       ACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCAT                                                                                       <  SRR4302537.2762610/94‑1 (MQ=60)

        CAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATT                                                                                      <  SRR4302537.2918052/94‑1 (MQ=60)

        CAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATT                                                                                      <  SRR4302537.6443172/94‑1 (MQ=60)

        CAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATT                                                                                      >  SRR4302537.485962/1‑94 (MQ=60)

             CACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCAT                                                                                 >  SRR4302537.2313118/1‑94 (MQ=60)

             CACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCAT                                                                                 >  SRR4302537.641650/1‑94 (MQ=60)

              ACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATC                                                                                <  SRR4302537.2896025/94‑1 (MQ=60)

                GCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAA                                                                              >  SRR4302537.3705715/1‑94 (MQ=60)

                GCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAA                                                                              >  SRR4302537.1829925/1‑94 (MQ=60)

                GCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAA                                                                              <  SRR4302537.5946802/94‑1 (MQ=60)

                   CGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCC                                                                           <  SRR4302537.5651642/94‑1 (MQ=60)

                   CGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCC                                                                           >  SRR4302537.1228997/1‑94 (MQ=60)

                    GTATCCCCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCG                                                                          <  SRR4302537.4283475/94‑1 (MQ=60)

                     TATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGG                                                                         >  SRR4302537.1524339/1‑94 (MQ=60)

                      ATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGC                                                                        >  SRR4302537.2935063/1‑94 (MQ=60)

                       TCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCT                                                                       <  SRR4302537.851097/94‑1 (MQ=60)

                        CACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTA                                                                      >  SRR4302537.829686/1‑94 (MQ=60)

                         ACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTAT                                                                     <  SRR4302537.2565363/94‑1 (MQ=60)

                          CCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATC                                                                    <  SRR4302537.1182499/94‑1 (MQ=60)

                          CCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATC                                                                    >  SRR4302537.2090871/1‑94 (MQ=60)

                           CCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCA                                                                   >  SRR4302537.2583633/1‑94 (MQ=60)

                           CCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCA                                                                   >  SRR4302537.1619181/1‑94 (MQ=60)

                           CCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCA                                                                   >  SRR4302537.2308168/1‑94 (MQ=60)

                            CCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCGCTCATTGCCATCAATCCGGCTATCAG                                                                  >  SRR4302537.2806495/1‑94 (MQ=60)

                             CAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGATAACAATTGGCACTCCCGTAGGCCGGCCTCATTGCCATCAATCCGGCTATCAGG                                                                 >  SRR4302537.5595655/1‑94 (MQ=60)

                             CAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGG                                                                 >  SRR4302537.316875/1‑94 (MQ=60)

                             CAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGG                                                                 <  SRR4302537.244374/94‑1 (MQ=60)

                              AACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGG                                                                >  SRR4302537.6111643/1‑94 (MQ=60)

                              AACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGG                                                                <  SRR4302537.2397150/94‑1 (MQ=60)

                               ACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGG                                                               <  SRR4302537.3043788/94‑1 (MQ=60)

                               ACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGG                                                               <  SRR4302537.2381918/94‑1 (MQ=60)

                                 AAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCG                                                             >  SRR4302537.3675261/1‑94 (MQ=60)

                                 AAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCG                                                             >  SRR4302537.104860/1‑94 (MQ=60)

                                  AGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGC                                                            >  SRR4302537.966183/1‑94 (MQ=60)

                                    CGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCAT                                                          <  SRR4302537.1924753/94‑1 (MQ=60)

                                    CGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCAT                                                          >  SRR4302537.5328290/1‑94 (MQ=60)

                                     GCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATG                                                         >  SRR4302537.1833552/1‑94 (MQ=60)

                                     GCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATG                                                         >  SRR4302537.228538/1‑94 (MQ=60)

                                     GCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATG                                                         <  SRR4302537.5491461/94‑1 (MQ=60)

                                      CAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGG                                                        <  SRR4302537.377860/94‑1 (MQ=60)

                                       AGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGC                                                       <  SRR4302537.1563429/94‑1 (MQ=60)

                                       AGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGC                                                       >  SRR4302537.544609/1‑94 (MQ=60)

                                       AGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGC                                                       <  SRR4302537.5960143/94‑1 (MQ=60)

                                           GTTTAAATATCATCAGCTCGCGGTGACAACCATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCACGGCGATC                                                   >  SRR4302537.4464924/1‑94 (MQ=60)

                                           GTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATC                                                   >  SRR4302537.2274503/1‑94 (MQ=60)

                                           GTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATC                                                   >  SRR4302537.5117729/1‑94 (MQ=60)

                                            TTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCC                                                  <  SRR4302537.5945582/94‑1 (MQ=60)

                                             TTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCACTCCGGCTATCATGGGCGCATGGCGATCCC                                                 >  SRR4302537.1555094/1‑94 (MQ=60)

                                                AATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGA                                              >  SRR4302537.905650/1‑94 (MQ=60)

                                                AATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGA                                              <  SRR4302537.1790973/94‑1 (MQ=60)

                                                 ATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAA                                             <  SRR4302537.5177591/94‑1 (MQ=60)

                                                 ATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAA                                             >  SRR4302537.438224/1‑94 (MQ=60)

                                                  TATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAA                                            >  SRR4302537.4086236/1‑94 (MQ=60)

                                                  TATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAA                                            >  SRR4302537.4922300/1‑94 (MQ=60)

                                                   ATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAAT                                           >  SRR4302537.79936/1‑94 (MQ=60)

                                                    TCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATG                                          >  SRR4302537.1047762/1‑94 (MQ=60)

                                                    TCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATG                                          <  SRR4302537.2835025/94‑1 (MQ=60)

                                                    TCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATG                                          >  SRR4302537.305337/1‑94 (MQ=60)

                                                      ATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGAT                                        >  SRR4302537.6415294/1‑94 (MQ=60)

                                                       TCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATG                                       >  SRR4302537.6222625/1‑94 (MQ=60)

                                                       TCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATG                                       >  SRR4302537.2429029/1‑94 (MQ=60)

                                                        CAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGG                                      <  SRR4302537.6226193/94‑1 (MQ=60)

                                                        CAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGG                                      <  SRR4302537.6427900/94‑1 (MQ=60)

                                                         AGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGT                                     >  SRR4302537.6429782/1‑94 (MQ=60)

                                                         AGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGT                                     <  SRR4302537.1197761/94‑1 (MQ=60)

                                                         AGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGG                                     >  SRR4302537.2880196/1‑94 (MQ=60)

                                                          GCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTG                                    <  SRR4302537.5198046/94‑1 (MQ=60)

                                                          GCTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTG                                    <  SRR4302537.5759221/94‑1 (MQ=60)

                                                           CTCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGG                                   <  SRR4302537.1307762/94‑1 (MQ=60)

                                                            TCGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGCAATGATGGTGGG                                  >  SRR4302537.3424208/1‑94 (MQ=60)

                                                             CGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTG                                 >  SRR4302537.4601999/1‑94 (MQ=60)

                                                             CGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTG                                 <  SRR4302537.592040/94‑1 (MQ=60)

                                                             CGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTG                                 <  SRR4302537.573394/94‑1 (MQ=60)

                                                             CGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTG                                 <  SRR4302537.1971397/94‑1 (MQ=60)

                                                             CGCGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTG                                 <  SRR4302537.5590351/94‑1 (MQ=60)

                                                               CGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGAC                               <  SRR4302537.1077251/94‑1 (MQ=60)

                                                               CGGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGAC                               <  SRR4302537.4397367/94‑1 (MQ=60)

                                                                GGTGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACG                              <  SRR4302537.2673173/94‑1 (MQ=60)

                                                                  TGACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCC                            <  SRR4302537.6026528/94‑1 (MQ=60)

                                                                   GACAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGAGCATGcagatcttcgtaatgctggtggtgcttatg                           >  SRR4302537.330451/1‑64 (MQ=60)

                                                                     CAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGA                         >  SRR4302537.2021617/1‑94 (MQ=60)

                                                                     CAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGA                         >  SRR4302537.3396886/1‑94 (MQ=60)

                                                                     CAACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGAAGCCGGA                         <  SRR4302537.445639/94‑1 (MQ=60)

                                                                      AACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAA                        >  SRR4302537.6374946/1‑94 (MQ=60)

                                                                      AACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAA                        >  SRR4302537.6055088/1‑94 (MQ=60)

                                                                      AACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAA                        >  SRR4302537.4594840/1‑94 (MQ=60)

                                                                       ACAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAAT                       <  SRR4302537.1324155/94‑1 (MQ=60)

                                                                        CAATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATT                      >  SRR4302537.4604518/1‑94 (MQ=60)

                                                                         AATTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTA                     <  SRR4302537.5463009/94‑1 (MQ=60)

                                                                           TTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACG                   >  SRR4302537.4351640/1‑94 (MQ=60)

                                                                           TTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACG                   <  SRR4302537.2041612/94‑1 (MQ=60)

                                                                           TTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACG                   <  SRR4302537.4491188/94‑1 (MQ=60)

                                                                           TTGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACG                   <  SRR4302537.5300684/94‑1 (MQ=60)

                                                                            TGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGG                  <  SRR4302537.1581342/94‑1 (MQ=60)

                                                                            TGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGG                  <  SRR4302537.6423222/94‑1 (MQ=60)

                                                                            TGGCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGG                  >  SRR4302537.6216813/1‑94 (MQ=60)

                                                                              GCACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGC                >  SRR4302537.5616266/1‑94 (MQ=60)

                                                                               CACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCC               >  SRR4302537.3286683/1‑94 (MQ=60)

                                                                               CACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCC               >  SRR4302537.750276/1‑94 (MQ=60)

                                                                                CCTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCG              <  SRR4302537.641129/94‑1 (MQ=60)

                                                                                ACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCG              <  SRR4302537.1939007/94‑1 (MQ=60)

                                                                                ACTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCG              >  SRR4302537.3900680/1‑94 (MQ=60)

                                                                                 CTCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGC             >  SRR4302537.2841280/1‑94 (MQ=60)

                                                                                  TCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCT            >  SRR4302537.2274413/1‑94 (MQ=60)

                                                                                  TCCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCT            >  SRR4302537.3463175/1‑94 (MQ=60)

                                                                                   CCCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTA           <  SRR4302537.508747/94‑1 (MQ=60)

                                                                                    CCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTAT          >  SRR4302537.5464668/1‑94 (MQ=60)

                                                                                    CCGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATCGCCATCTACGCAATGATGGTGGTGCCGCCGGAATTACGGGCCGCTAT          >  SRR4302537.2894568/1‑94 (MQ=60)

                                                                                     CGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATT         >  SRR4302537.1424764/1‑94 (MQ=60)

                                                                                     CGTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATT         >  SRR4302537.5625242/1‑94 (MQ=60)

                                                                                      GTAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTC        <  SRR4302537.4601008/94‑1 (MQ=60)

                                                                                       TAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCA       >  SRR4302537.4833973/1‑94 (MQ=60)

                                                                                       TAGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCA       <  SRR4302537.4671367/94‑1 (MQ=60)

                                                                                        AGGCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCAT      <  SRR4302537.6373732/94‑1 (MQ=60)

                                                                                          GCCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGA    >  SRR4302537.5156919/1‑94 (MQ=60)

                                                                                           CCGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAA   <  SRR4302537.1985938/94‑1 (MQ=60)

                                                                                            CGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAA  >  SRR4302537.1179174/1‑94 (MQ=60)

AATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAATATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCATGGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAA  >  NC_000913/3457126‑3457311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`