Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,553,975	C→T	E171K (GAA→AAA)	yhgKJ ←	RNA phosphage cyclase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,553,975	0	C	T	100.0%	894.1 / NA	252	E171K (GAA→AAA)	yhgKJ	RNA phosphage cyclase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (106/146); total (106/146)

Only 100 of 258 total aligned reads displayed.

CACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCT  >  NC_000913/3553885‑3554064

cacCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCg                                                                                         >  1:2953963/1‑93 (MQ=255)

 acCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGt                                                                                        >  2:4578614/1‑93 (MQ=255)

     gCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGcc                                                                                    >  1:319497/1‑93 (MQ=255)

      cTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGcca                                                                                   >  1:2823801/1‑93 (MQ=255)

       tAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGccac                                                                                  <  2:1617040/93‑1 (MQ=255)

        aaTAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGccacc                                                                                 >  1:64129/1‑93 (MQ=255)

         aTAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGccacca                                                                                <  1:4754898/93‑1 (MQ=255)

         aTAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGccacca                                                                                <  1:6051453/93‑1 (MQ=255)

          tAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCcaccac                                                                               >  1:4097183/1‑93 (MQ=255)

          tAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCcaccac                                                                               <  1:154337/93‑1 (MQ=255)

           aGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACcaca                                                                              >  2:4088401/1‑93 (MQ=255)

            gAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCacac                                                                             >  1:1061464/1‑93 (MQ=255)

            gAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCacac                                                                             <  1:4738549/93‑1 (MQ=255)

            gAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCacac                                                                             <  2:515760/93‑1 (MQ=255)

            gAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCacac                                                                             >  2:6263104/1‑93 (MQ=255)

            aaccTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCacac                                                                             <  2:3368825/90‑1 (MQ=255)

              aCTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCg                                                                           >  1:3560147/1‑93 (MQ=255)

               cTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGc                                                                          <  2:4210554/93‑1 (MQ=255)

               cTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGc                                                                          >  1:1169851/1‑93 (MQ=255)

                ctgtcCGCGCATCTGCACAATCTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCCCACCGcc                                                                         <  2:4778040/90‑1 (MQ=255)

                 tctcCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCt                                                                        <  1:4588823/93‑1 (MQ=255)

                  ctcCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTc                                                                       <  1:5154285/93‑1 (MQ=255)

                  ctcCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTc                                                                       <  1:889316/93‑1 (MQ=255)

                   tcCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTcc                                                                      >  2:2555976/1‑93 (MQ=255)

                   tcCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTcc                                                                      <  1:5002546/93‑1 (MQ=255)

                     cACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCgg                                                                    <  1:612147/93‑1 (MQ=255)

                        gCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAg                                                                 <  1:1629225/93‑1 (MQ=255)

                        gCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAg                                                                 <  2:2865355/93‑1 (MQ=255)

                        gCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAg                                                                 <  1:1334337/93‑1 (MQ=255)

                         cATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAgg                                                                <  2:5577813/93‑1 (MQ=255)

                          aTCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAggg                                                               >  2:1078902/1‑93 (MQ=255)

                           tCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGt                                                              >  2:5632180/1‑93 (MQ=255)

                             tGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGGGTTAAACCATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTaa                                                            >  2:3669104/1‑93 (MQ=255)

                              gCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTaaa                                                           >  1:1906600/1‑93 (MQ=255)

                                acaATGTCCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACCCCGCCTCCGGCAGGGTaaaaa                                                         <  2:5451138/93‑1 (MQ=255)

                                 caATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAAc                                                        <  1:3020313/93‑1 (MQ=255)

                                 caATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGACTCCGGCAGGGGAAAAAc                                                        >  1:4184369/1‑93 (MQ=255)

                                  aaTGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAAcc                                                       <  2:5680041/93‑1 (MQ=255)

                                  aaTGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAAcc                                                       >  2:235572/1‑93 (MQ=255)

                                   aTGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCg                                                      >  2:5878006/1‑93 (MQ=255)

                                    tGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGt                                                     >  2:5362785/1‑93 (MQ=255)

                                     gTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTg                                                    <  1:5640381/93‑1 (MQ=255)

                                         ccGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGCGGCGt                                                >  1:5216458/1‑93 (MQ=255)

                                           gcgcTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTaa                                              <  2:911113/93‑1 (MQ=255)

                                           gcgcTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTaa                                              <  1:205691/93‑1 (MQ=255)

                                            cgcTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAAc                                             <  1:684840/93‑1 (MQ=255)

                                             gcTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACa                                            >  2:4350806/1‑93 (MQ=255)

                                             gcTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACa                                            <  2:2018841/93‑1 (MQ=255)

                                             gcTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACa                                            >  1:747528/1‑93 (MQ=255)

                                               tCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGc                                          <  1:5065072/93‑1 (MQ=255)

                                                 gCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGt                                        >  1:1789627/1‑93 (MQ=255)

                                                 gCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGt                                        <  2:4677382/93‑1 (MQ=255)

                                                  ccAAGTTGCAAGTTGTTAAACGATGCCACGGGCGATACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTg                                       >  2:6474829/1‑93 (MQ=255)

                                                  ccAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTg                                       >  1:5282456/1‑93 (MQ=255)

                                                   cAAGTTGCAAGGTGTTAAACGATGCCACGGGCGATACTTTCGTTGGCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTgg                                      <  1:982521/93‑1 (MQ=255)

                                                   cAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTgg                                      <  1:1472224/93‑1 (MQ=255)

                                                    aaGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGt                                     <  2:4572219/93‑1 (MQ=255)

                                                     aGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGtt                                    <  2:1688102/93‑1 (MQ=255)

                                                     aGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGtt                                    <  2:1833626/93‑1 (MQ=255)

                                                     aGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGtt                                    <  2:3894128/93‑1 (MQ=255)

                                                     aGTTGCAAGGTGTTAAACGATCCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGtt                                    <  1:2641867/93‑1 (MQ=255)

                                                      gTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGttt                                   <  1:3000913/93‑1 (MQ=255)

                                                        tGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGc                                 <  2:5850268/93‑1 (MQ=255)

                                                        tGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGc                                 <  1:3432513/93‑1 (MQ=255)

                                                         gCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTTCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCt                                >  2:5973544/1‑93 (MQ=255)

                                                         gCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCt                                <  1:4260801/93‑1 (MQ=255)

                                                           aaGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtga                              <  2:553558/93‑1 (MQ=255)

                                                           aaGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtga                              <  1:2499560/93‑1 (MQ=255)

                                                           aaGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtga                              <  2:1917863/93‑1 (MQ=255)

                                                           aaGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtga                              >  1:5751622/1‑93 (MQ=255)

                                                           aaGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtca                              <  2:6373989/93‑3 (MQ=255)

                                                            aGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtgat                             >  2:657100/1‑93 (MQ=255)

                                                            aGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtgat                             >  2:2667794/1‑93 (MQ=255)

                                                             ggTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtgatg                            <  2:5766170/93‑1 (MQ=255)

                                                             ggTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtgatg                            >  2:5061462/1‑93 (MQ=255)

                                                              gtgtTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtgatga                           <  1:2723351/93‑1 (MQ=255)

                                                               tgtTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGaa                          <  2:6005463/93‑1 (MQ=255)

                                                                gtTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAAt                         <  2:306289/93‑1 (MQ=255)

                                                                gtTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAAt                         >  1:4613458/1‑93 (MQ=255)

                                                                   aaaCGATGCCACGGGCGAGACTTTCGTTGCCACCACCCCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTcc                      <  2:1499860/93‑1 (MQ=255)

                                                                    aaCGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCt                     <  1:5240111/93‑1 (MQ=255)

                                                                    aaCGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCt                     >  1:3882323/1‑93 (MQ=255)

                                                                     aCGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTa                    <  2:1151334/93‑1 (MQ=255)

                                                                       gATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTAtt                  >  1:2391194/1‑93 (MQ=255)

                                                                         tGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTAtttt                >  1:2280503/1‑93 (MQ=255)

                                                                         tGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTAtttt                <  2:5071375/93‑1 (MQ=255)

                                                                          gCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTc               <  1:6033874/93‑1 (MQ=255)

                                                                           ccACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCg              <  1:652189/93‑1 (MQ=255)

                                                                             aCGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGcc            >  2:3973837/1‑93 (MQ=255)

                                                                             aCGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGcc            >  1:4924349/1‑93 (MQ=255)

                                                                               gggCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCcag          >  2:3132585/1‑93 (MQ=255)

                                                                                ggCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCcagc         <  2:3755763/93‑1 (MQ=255)

                                                                                  cGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCcagcag       <  1:5400760/93‑1 (MQ=255)

                                                                                   gagaCTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCagcagc      <  1:3273605/93‑1 (MQ=255)

                                                                                   gagaCTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCagcagc      <  1:6187164/93‑1 (MQ=255)

                                                                                   gagaCTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCagcagc      <  2:3545044/93‑1 (MQ=255)

                                                                                   gagaCTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCagcagc      >  1:3725114/1‑93 (MQ=255)

                                                                                     gaCTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCgg    <  2:3216026/93‑1 (MQ=255)

                                                                                     gaCTTTCGTTGCAACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCgg    >  2:6409050/1‑93 (MQ=255)

                                                                                      aCTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGc   >  1:2761752/1‑93 (MQ=255)

CACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCT  >  NC_000913/3553885‑3554064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCA  >  NC_000913/3553883‑3554067

CACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTC                                                                                             <  SRR4302537.4292461/94‑1 (MQ=60)

CACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTC                                                                                             <  SRR4302537.5780231/94‑1 (MQ=60)

 ACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCG                                                                                            >  SRR4302537.2974691/1‑94 (MQ=60)

 ACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCG                                                                                            >  SRR4302537.2974690/1‑94 (MQ=60)

 ACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGCGTTAAACGATGCCACGGGCGAGACTTTCG                                                                                            >  SRR4302537.2137295/1‑94 (MQ=60)

  CACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGT                                                                                           >  SRR4302537.5029948/1‑94 (MQ=60)

   ACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTT                                                                                          <  SRR4302537.2466017/94‑1 (MQ=60)

   ACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTT                                                                                          >  SRR4302537.2744833/1‑94 (MQ=60)

    CCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTG                                                                                         <  SRR4302537.2370391/94‑1 (MQ=60)

      AGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCC                                                                                       >  SRR4302537.321711/1‑94 (MQ=60)

      AGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCC                                                                                       <  SRR4302537.660418/94‑1 (MQ=60)

       GCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCA                                                                                      >  SRR4302537.2843539/1‑94 (MQ=60)

        CTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCAC                                                                                     <  SRR4302537.1327285/94‑1 (MQ=60)

         TAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACC                                                                                    >  SRR4302537.64605/1‑94 (MQ=60)

           ATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCAC                                                                                  <  SRR4302537.6093020/94‑1 (MQ=60)

           ATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCAC                                                                                  >  SRR4302537.4125790/1‑94 (MQ=60)

           ATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCAC                                                                                  <  SRR4302537.4787741/94‑1 (MQ=60)

            TAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACA                                                                                 <  SRR4302537.155436/94‑1 (MQ=60)

             AGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACAC                                                                                >  SRR4302537.1068785/1‑94 (MQ=60)

             AGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACAC                                                                                <  SRR4302537.1624422/94‑1 (MQ=60)

              GAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACC                                                                               <  SRR4302537.4771298/94‑1 (MQ=60)

               AACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCG                                                                              >  SRR4302537.4786083/1‑94 (MQ=60)

               AACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCG                                                                              >  SRR4302537.3585262/1‑94 (MQ=60)

                ACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGC                                                                             >  SRR4302537.1177989/1‑94 (MQ=60)

                  TTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCT                                                                           >  SRR4302537.1211176/1‑94 (MQ=60)

                   TCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTC                                                                          <  SRR4302537.5042469/94‑1 (MQ=60)

                   TCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTC                                                                          <  SRR4302537.4620556/94‑1 (MQ=60)

                    CTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCC                                                                         <  SRR4302537.94231/94‑1 (MQ=60)

                    CTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCC                                                                         <  SRR4302537.5189799/94‑1 (MQ=60)

                    CTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCC                                                                         <  SRR4302537.895432/94‑1 (MQ=60)

                    CTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCC                                                                         <  SRR4302537.864350/94‑1 (MQ=60)

                     TCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCG                                                                        >  SRR4302537.1163004/1‑94 (MQ=60)

                     TCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCG                                                                        <  SRR4302537.5037005/94‑1 (MQ=60)

                     TCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCG                                                                        <  SRR4302537.4645126/94‑1 (MQ=60)

                     TCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGAGGTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCG                                                                        >  SRR4302537.1911598/1‑94 (MQ=60)

                      CCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGG                                                                       <  SRR4302537.4413458/94‑1 (MQ=60)

                       CACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGC                                                                      <  SRR4302537.616326/94‑1 (MQ=60)

                         CGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAG                                                                    <  SRR4302537.4992249/94‑1 (MQ=60)

                          GCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGG                                                                   <  SRR4302537.1343629/94‑1 (MQ=60)

                          GCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGG                                                                   <  SRR4302537.1640625/94‑1 (MQ=60)

                          GCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGG                                                                   <  SRR4302537.5944929/94‑1 (MQ=60)

                           CATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGG                                                                  <  SRR4302537.5300567/94‑1 (MQ=60)

                            ATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCATGGGCGAGAATTTCGTTGCCAATACATCGCCTCCGGCAGGGC                                                                 >  SRR4302537.3323674/1‑94 (MQ=60)

                            ATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGT                                                                 >  SRR4302537.3192945/1‑94 (MQ=60)

                             TCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTA                                                                >  SRR4302537.5128464/1‑94 (MQ=60)

                             TCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACCGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTA                                                                <  SRR4302537.2680458/94‑1 (MQ=60)

                              CTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAA                                                               >  SRR4302537.4837791/1‑94 (MQ=60)

                               TGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAA                                                              >  SRR4302537.1919843/1‑94 (MQ=60)

                                GCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAA                                                             >  SRR4302537.2034897/1‑94 (MQ=60)

                                  ACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAAC                                                           <  SRR4302537.5566119/94‑1 (MQ=60)

                                  ACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGACTCCGGCAGGGGAAAAAC                                                           >  SRR4302537.4213583/1‑94 (MQ=60)

                                   CAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACA                                                          <  SRR4302537.3041370/94‑1 (MQ=60)

                                    AATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCG                                                         <  SRR4302537.3888262/94‑1 (MQ=60)

                                     ATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGT                                                        >  SRR4302537.1684870/1‑94 (MQ=60)

                                      TGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTG                                                       <  SRR4302537.3035464/94‑1 (MQ=60)

                                      TGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTG                                                       >  SRR4302537.5267538/1‑94 (MQ=60)

                                      TGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTG                                                       <  SRR4302537.4090831/94‑1 (MQ=60)

                                      TGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTG                                                       >  SRR4302537.4229551/1‑94 (MQ=60)

                                      TGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTG                                                       <  SRR4302537.221915/94‑1 (MQ=60)

                                       GTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGG                                                      >  SRR4302537.1711681/1‑94 (MQ=60)

                                       GTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGG                                                      >  SRR4302537.3644054/1‑94 (MQ=60)

                                       GTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGG                                                      >  SRR4302537.5257811/1‑94 (MQ=60)

                                       GTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGG                                                      <  SRR4302537.3422363/94‑1 (MQ=60)

                                       GTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGG                                                      <  SRR4302537.5678983/94‑1 (MQ=60)

                                       GTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGG                                                      >  SRR4302537.2988857/1‑94 (MQ=60)

                                        TTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGC                                                     <  SRR4302537.461101/94‑1 (MQ=60)

                                         TCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCG                                                    <  SRR4302537.5750242/94‑1 (MQ=60)

                                          CCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGCGGCGT                                                   >  SRR4302537.5252330/1‑94 (MQ=60)

                                             GCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAAC                                                <  SRR4302537.207164/94‑1 (MQ=60)

                                             GCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAAC                                                >  SRR4302537.729934/1‑94 (MQ=60)

                                              CGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACA                                               <  SRR4302537.1501074/94‑1 (MQ=60)

                                              CGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACA                                               <  SRR4302537.100317/94‑1 (MQ=60)

                                              CGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACA                                               >  SRR4302537.752629/1‑94 (MQ=60)

                                              CGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACA                                               <  SRR4302537.689540/94‑1 (MQ=60)

                                                CTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGC                                             >  SRR4302537.1348785/1‑94 (MQ=60)

                                                 TCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCG                                            <  SRR4302537.5099935/94‑1 (MQ=60)

                                                  CGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGT                                           >  SRR4302537.1802126/1‑94 (MQ=60)

                                                  CGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGT                                           >  SRR4302537.554825/1‑94 (MQ=60)

                                                   GCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTG                                          <  SRR4302537.730167/94‑1 (MQ=60)

                                                   GCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTG                                          >  SRR4302537.5318788/1‑94 (MQ=60)

                                                     CAAGTTGCAAGGTGTTAAACGATGCCACGGGCGATACTTTCGTTGGCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGT                                        <  SRR4302537.989306/94‑1 (MQ=60)

                                                     CAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGT                                        <  SRR4302537.1482457/94‑1 (MQ=60)

                                                       AGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTT                                      >  SRR4302537.4666513/1‑94 (MQ=60)

                                                       AGTTGCAAGGTGTTAAACGATCCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTT                                      <  SRR4302537.2660351/94‑1 (MQ=60)

                                                        GTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTG                                     <  SRR4302537.3021825/94‑1 (MQ=60)

                                                          TGCAAGGTGTTAAACGATGCCGCGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCT                                   <  SRR4302537.4189272/94‑1 (MQ=60)

                                                          TGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCT                                   <  SRR4302537.4766686/94‑1 (MQ=60)

                                                          TGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCT                                   <  SRR4302537.5284675/94‑1 (MQ=60)

                                                          TGCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCT                                   <  SRR4302537.3456807/94‑1 (MQ=60)

                                                           GCAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTG                                  <  SRR4302537.4290408/94‑1 (MQ=60)

                                                            CAAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGA                                 >  SRR4302537.5791022/1‑94 (MQ=60)

                                                             AAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGAT                                <  SRR4302537.2517151/94‑1 (MQ=60)

                                                             AAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGAT                                <  SRR4302537.3150099/94‑1 (MQ=60)

                                                             AAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGAT                                >  SRR4302537.879382/1‑94 (MQ=60)

                                                             AAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGAT                                <  SRR4302537.6115439/94‑1 (MQ=60)

                                                             AAGGTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGAT                                <  SRR4302537.5163262/94‑1 (MQ=60)

                                                                GTGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAA                             <  SRR4302537.2742372/94‑1 (MQ=60)

                                                                 TGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAAT                            >  SRR4302537.2709828/1‑94 (MQ=60)

                                                                 TGTTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAAT                            >  SRR4302537.4645405/1‑94 (MQ=60)

                                                                   gtaagCGATGCCGCGGGCGAGCCTTGCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTC                          <  SRR4302537.6105789/89‑1 (MQ=60)

                                                                   TTAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTC                          >  SRR4302537.2824750/1‑94 (MQ=60)

                                                                    TAAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCC                         <  SRR4302537.5430561/94‑1 (MQ=60)

                                                                    TAAACGATGCAACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCC                         >  SRR4302537.3535914/1‑94 (MQ=60)

                                                                     AAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCT                        <  SRR4302537.6086089/94‑1 (MQ=60)

                                                                     AAACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCT                        >  SRR4302537.3909482/1‑94 (MQ=60)

                                                                      AACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCATGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTA                       >  SRR4302537.1501460/1‑94 (MQ=60)

                                                                      AACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTA                       <  SRR4302537.5276170/94‑1 (MQ=60)

                                                                       ACGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTAT                      <  SRR4302537.6224743/94‑1 (MQ=60)

                                                                        CGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATT                     >  SRR4302537.2408033/1‑94 (MQ=60)

                                                                        CGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATT                     <  SRR4302537.2775897/94‑1 (MQ=60)

                                                                        CGATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATT                     <  SRR4302537.3595457/94‑1 (MQ=60)

                                                                         GATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTT                    <  SRR4302537.2464671/94‑1 (MQ=60)

                                                                          ATGCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTT                   >  SRR4302537.2296597/1‑94 (MQ=60)

                                                                            GCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCG                 <  SRR4302537.6075334/94‑1 (MQ=60)

                                                                            GCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCG                 <  SRR4302537.3346932/94‑1 (MQ=60)

                                                                            GCCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTAG                 <  SRR4302537.1805296/94‑1 (MQ=60)

                                                                             CCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGC                <  SRR4302537.656640/94‑1 (MQ=60)

                                                                             CCACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGC                >  SRR4302537.3027212/1‑94 (MQ=60)

                                                                              CACGGGCGAGACTTTTGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCC               >  SRR4302537.6385924/1‑94 (MQ=60)

                                                                              CACGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCC               >  SRR4302537.4958304/1‑94 (MQ=60)

                                                                                CGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAG             <  SRR4302537.4123114/94‑1 (MQ=60)

                                                                                CGGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAG             <  SRR4302537.6501598/94‑1 (MQ=60)

                                                                                 GGGCGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGC            >  SRR4302537.6461530/1‑94 (MQ=60)

                                                                                    CGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGC         >  SRR4302537.3751285/1‑94 (MQ=60)

                                                                                    CGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGC         <  SRR4302537.5939356/94‑1 (MQ=60)

                                                                                    CGAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGC         <  SRR4302537.5437622/94‑1 (MQ=60)

                                                                                     GAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCG        <  SRR4302537.4790340/94‑1 (MQ=60)

                                                                                     GAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCG        <  SRR4302537.6229784/94‑1 (MQ=60)

                                                                                     GAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCG        <  SRR4302537.6229785/94‑1 (MQ=60)

                                                                                     GAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCG        <  SRR4302537.5211253/94‑1 (MQ=60)

                                                                                     GAGACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCG        <  SRR4302537.3296706/94‑1 (MQ=60)

                                                                                       GACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGC      >  SRR4302537.2781020/1‑94 (MQ=60)

                                                                                       GACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGC      <  SRR4302537.2644197/94‑1 (MQ=60)

                                                                                       GACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGC      <  SRR4302537.3267953/94‑1 (MQ=60)

                                                                                        ACTTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCT     >  SRR4302537.4144092/1‑94 (MQ=60)

                                                                                          TTTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCC   <  SRR4302537.4594858/94‑1 (MQ=60)

                                                                                           TTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCA  <  SRR4302537.2409723/94‑1 (MQ=60)

                                                                                           TTCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCA  >  SRR4302537.3803748/1‑94 (MQ=60)

CACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCA  >  NC_000913/3553883‑3554067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`