Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,561,412 |
A→G |
V76A (GTG→GCG) |
b3427 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,561,412 | 0 | A | G | 100.0%
| 906.0
/ NA
| 261 | V76A (GTG→GCG) | b3427 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (119/142); total (119/142) |
Only 100 of 268 total aligned reads displayed.
GCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCACGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATA > NC_000913/3561324‑3561501
|
gcACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGtt > 2:5335025/1‑93 (MQ=255)
cACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTc < 2:1840338/93‑1 (MQ=255)
cTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTccc < 2:1876445/93‑1 (MQ=255)
tttGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTcccc > 2:881162/1‑93 (MQ=255)
tttGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTcccc < 1:5349238/93‑1 (MQ=255)
ttGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCa > 2:4313696/1‑93 (MQ=255)
gTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACt > 2:2799554/1‑93 (MQ=255)
aaaTCTATCATACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGccc < 2:2617028/93‑1 (MQ=255)
aaaTCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGccc < 1:626518/93‑1 (MQ=255)
aaTCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAACCTCAGGCGCGTTCCCCACTCGcccc < 2:3670663/93‑1 (MQ=255)
aaTCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGcccc > 2:2178048/1‑93 (MQ=255)
aTCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCg > 1:3782505/1‑93 (MQ=255)
tCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCga < 2:5893329/93‑1 (MQ=255)
tCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCga < 1:508579/93‑1 (MQ=255)
cTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCgag < 1:3055627/93‑1 (MQ=255)
cTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCgag < 1:2368568/93‑1 (MQ=255)
tAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCgaga > 2:495808/1‑93 (MQ=255)
tAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCgaga > 2:6406060/1‑93 (MQ=255)
aCCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaaa > 2:1434179/1‑93 (MQ=255)
ccTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaaaa < 2:3805821/93‑1 (MQ=255)
ccTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaaaa < 2:156655/93‑1 (MQ=255)
cTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGaaaaa > 1:5809915/1‑93 (MQ=255)
tACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAAt < 1:5146000/93‑1 (MQ=255)
aCTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATa > 2:5240349/1‑93 (MQ=255)
tttttAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGc < 2:3291965/93‑1 (MQ=255)
tttttAATTCAGGAAATTCCCGCAAAGCCCACGCCATCATACCCAACGTAACAAATCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGc < 1:4488958/93‑1 (MQ=255)
ttttAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCa > 1:1865071/1‑93 (MQ=255)
tttAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCAt < 1:5181007/93‑1 (MQ=255)
tttAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCAt > 1:1666832/1‑93 (MQ=255)
ttAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCAtt > 2:2256886/1‑93 (MQ=255)
tAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTa > 1:4209250/1‑93 (MQ=255)
aaTTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTaa < 2:240108/93‑1 (MQ=255)
aaTTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTaa < 2:2096156/93‑1 (MQ=255)
aTTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGATAAAAATAGCATTAAt < 2:4236067/93‑1 (MQ=255)
aTTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAAt > 1:142215/1‑93 (MQ=255)
aTTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAAt > 2:2684085/1‑93 (MQ=255)
ttCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATg < 1:1606342/93‑1 (MQ=255)
tCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATgc > 2:5462501/1‑93 (MQ=255)
tCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATgc > 1:102424/1‑93 (MQ=255)
cAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATgcg > 2:4524983/1‑93 (MQ=255)
cAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATgcg < 1:1821693/93‑1 (MQ=255)
gggAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATgcgtc > 2:502897/1‑91 (MQ=255)
gggAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGcc > 1:3316554/1‑93 (MQ=255)
ggAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGccc < 1:777478/93‑1 (MQ=255)
ggAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGccc > 2:1528386/1‑93 (MQ=255)
ggAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGccc < 2:3328866/93‑1 (MQ=255)
gAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCa > 2:5174050/1‑93 (MQ=255)
aTTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAgc < 1:5742997/93‑1 (MQ=255)
ttACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAgcg < 1:2764920/93‑1 (MQ=255)
tACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAgcgc < 2:3919751/93‑1 (MQ=255)
aCCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGcc < 2:3193837/93‑1 (MQ=255)
ccGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCa < 1:5474121/93‑1 (MQ=255)
cGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAg > 1:3683411/1‑93 (MQ=255)
gCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGc > 1:5390711/1‑93 (MQ=255)
cAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCa > 1:2202221/1‑93 (MQ=255)
aaaGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCAt < 2:4425468/93‑1 (MQ=255)
aaGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATa < 1:360722/93‑1 (MQ=255)
aaGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATa > 2:4208490/1‑93 (MQ=255)
gCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATaaa < 2:5519461/93‑1 (MQ=255)
cccACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATaaaa < 2:299733/93‑1 (MQ=255)
ccACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATaaaaa < 1:3964607/93‑1 (MQ=255)
ccACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATaaaaa < 1:6131399/93‑1 (MQ=255)
cGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAttt < 1:2503546/93‑1 (MQ=255)
catcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGa < 2:347117/93‑1 (MQ=255)
catcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGa > 2:694054/1‑93 (MQ=255)
catcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGa < 1:5995738/93‑1 (MQ=255)
catcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGa > 1:5693056/1‑93 (MQ=255)
atcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAg < 2:72169/93‑1 (MQ=255)
tcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGc < 2:5451810/93‑1 (MQ=255)
tcatACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGc > 2:3852710/1‑93 (MQ=255)
atACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAg < 2:203633/93‑1 (MQ=255)
tACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGa < 2:5361037/93‑1 (MQ=255)
tACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGa > 2:1972830/1‑93 (MQ=255)
cccAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCGGCGCCAGCATAAAAATTTTGAGCAGAAg < 1:1923484/93‑1 (MQ=255)
ccAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAgg > 2:5775745/1‑93 (MQ=255)
ccAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAgg > 1:721966/1‑93 (MQ=255)
ccAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAgg > 1:2939729/1‑93 (MQ=255)
ccAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAgg < 1:5781018/93‑1 (MQ=255)
caccGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGt < 2:6164022/90‑1 (MQ=255)
cAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGt < 2:4043939/93‑1 (MQ=255)
cAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGt > 2:4801749/1‑93 (MQ=255)
aaCGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTa > 1:4111410/1‑93 (MQ=255)
aCGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTaa < 2:2914101/93‑1 (MQ=255)
cGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTaaa < 2:5116745/93‑1 (MQ=255)
gTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAt < 2:1119893/93‑1 (MQ=255)
tAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAtt > 1:3216208/1‑93 (MQ=255)
tAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAtt > 1:818474/1‑93 (MQ=255)
aCAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAttgt < 1:2015970/93‑1 (MQ=255)
cAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAttgtt > 2:6023267/1‑93 (MQ=255)
cAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAttgtt > 1:1210069/1‑93 (MQ=255)
cAAAACTCAGGCGCGTCCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAttgtt < 1:2623001/93‑1 (MQ=255)
aaaaCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAAttgttg < 1:6387698/93‑1 (MQ=255)
aaaCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTgg > 1:2274530/1‑93 (MQ=255)
aaaCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTgg < 2:4499614/93‑1 (MQ=255)
aaaCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTgg < 1:3575379/93‑1 (MQ=255)
aaCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGc > 2:1287420/1‑93 (MQ=255)
aCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCg < 2:2454559/93‑1 (MQ=255)
aGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGAt > 2:5162317/1‑93 (MQ=255)
ggCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATa > 2:3732938/1‑93 (MQ=255)
ggCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATa < 1:335502/93‑1 (MQ=255)
|
GCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCACGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATA > NC_000913/3561324‑3561501
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCACGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAAGGA > NC_000913/3561319‑3561505
|
AAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCG < SRR4302537.5742468/94‑1 (MQ=60)
AAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCG < SRR4302537.5270887/94‑1 (MQ=60)
AAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCG < SRR4302537.4720868/94‑1 (MQ=60)
GCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTC > SRR4302537.5677819/1‑94 (MQ=60)
GCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTC > SRR4302537.1452875/1‑94 (MQ=60)
GCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTC < SRR4302537.406188/94‑1 (MQ=60)
CACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCC > SRR4302537.1031836/1‑94 (MQ=60)
ACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCC > SRR4302537.384350/1‑94 (MQ=60)
ACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCC > SRR4302537.3607510/1‑94 (MQ=60)
CTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCC < SRR4302537.3617431/94‑1 (MQ=60)
CTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCC > SRR4302537.4469289/1‑94 (MQ=60)
CTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCC > SRR4302537.5824559/1‑94 (MQ=60)
TTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCA < SRR4302537.5385887/94‑1 (MQ=60)
TTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCAC > SRR4302537.3353221/1‑94 (MQ=60)
GTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTC < SRR4302537.2927214/94‑1 (MQ=60)
GTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTC < SRR4302537.6139672/94‑1 (MQ=60)
GTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTAAGGCGCGTTCCCCACTC < SRR4302537.4017750/94‑1 (MQ=60)
CAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGC > SRR4302537.3672755/1‑94 (MQ=60)
AAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCC < SRR4302537.630787/94‑1 (MQ=60)
AATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCG > SRR4302537.2756489/1‑94 (MQ=60)
AATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCG > SRR4302537.3809065/1‑94 (MQ=60)
TCTAGCCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAG < SRR4302537.3240302/94‑1 (MQ=60)
TCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAG < SRR4302537.512071/94‑1 (MQ=60)
TCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAG < SRR4302537.4182164/94‑1 (MQ=60)
CTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGA < SRR4302537.3076919/94‑1 (MQ=60)
CTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGA > SRR4302537.162951/1‑94 (MQ=60)
CTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGA < SRR4302537.2385262/94‑1 (MQ=60)
AACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAA > SRR4302537.3560441/1‑94 (MQ=60)
CCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAA > SRR4302537.5849748/1‑94 (MQ=60)
CTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAAT > SRR4302537.2363181/1‑94 (MQ=60)
TACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATA < SRR4302537.5181461/94‑1 (MQ=60)
ACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTGCCCACTCGCCCCGAGAAAAATAG > SRR4302537.736670/1‑94 (MQ=60)
ACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAG < SRR4302537.785687/94‑1 (MQ=60)
CTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGC > SRR4302537.691178/1‑94 (MQ=60)
CTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGC > SRR4302537.5310320/1‑94 (MQ=60)
TTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCA < SRR4302537.5765337/94‑1 (MQ=60)
TTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCA > SRR4302537.1878060/1‑94 (MQ=60)
TTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCA < SRR4302537.5196961/94‑1 (MQ=60)
TTTTTAATTCAGGAAATTCCCGCAAAGCCCACGCCATCATACCCAACGTAACAAATCTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCA < SRR4302537.4520010/94‑1 (MQ=60)
TTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCAT > SRR4302537.1678508/1‑94 (MQ=60)
TTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATT < SRR4302537.5216659/94‑1 (MQ=60)
TTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATT > SRR4302537.2648108/1‑94 (MQ=60)
TTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTA > SRR4302537.4238613/1‑94 (MQ=60)
AATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAAT < SRR4302537.5817208/94‑1 (MQ=60)
AATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAAT > SRR4302537.143224/1‑94 (MQ=60)
ATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATG > SRR4302537.2994271/1‑94 (MQ=60)
ATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATG > SRR4302537.2542524/1‑94 (MQ=60)
TTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGC > SRR4302537.103163/1‑94 (MQ=60)
TTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGC < SRR4302537.1617574/94‑1 (MQ=60)
CAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGC < SRR4302537.1834395/94‑1 (MQ=60)
AGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCC > SRR4302537.3340017/1‑94 (MQ=60)
AGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCC > SRR4302537.5828391/1‑94 (MQ=60)
GGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCC > SRR4302537.3114282/1‑94 (MQ=60)
GGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCA < SRR4302537.782811/94‑1 (MQ=60)
GAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAG < SRR4302537.5172389/94‑1 (MQ=60)
AATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGC > SRR4302537.5444658/1‑94 (MQ=60)
ATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCG < SRR4302537.5782318/94‑1 (MQ=60)
ATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCG > SRR4302537.2291503/1‑94 (MQ=60)
TTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGC < SRR4302537.2784236/94‑1 (MQ=60)
TACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCC > SRR4302537.1765346/1‑94 (MQ=60)
CCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAG < SRR4302537.5511479/94‑1 (MQ=60)
CCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAG > SRR4302537.3709314/1‑94 (MQ=60)
CGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGC < SRR4302537.5213589/94‑1 (MQ=60)
CGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGC > SRR4302537.5427538/1‑94 (MQ=60)
GCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCA > SRR4302537.2217751/1‑94 (MQ=60)
CAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCAT > SRR4302537.876638/1‑94 (MQ=60)
AAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATA < SRR4302537.1498615/94‑1 (MQ=60)
AAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAA > SRR4302537.1888222/1‑94 (MQ=60)
AAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAA < SRR4302537.363230/94‑1 (MQ=60)
CCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAT < SRR4302537.6173546/94‑1 (MQ=60)
CCACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAAT < SRR4302537.3992336/94‑1 (MQ=60)
CACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATT > SRR4302537.3911365/1‑94 (MQ=60)
ACGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTT < SRR4302537.5539673/94‑1 (MQ=60)
CGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTT < SRR4302537.2521158/94‑1 (MQ=60)
CGCCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTT < SRR4302537.6389400/94‑1 (MQ=60)
CCATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGA > SRR4302537.5731994/1‑94 (MQ=60)
CATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAG < SRR4302537.6036914/94‑1 (MQ=60)
ATCATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGC < SRR4302537.1224188/94‑1 (MQ=60)
CATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAG < SRR4302537.1788246/94‑1 (MQ=60)
CATACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAG < SRR4302537.5224391/94‑1 (MQ=60)
ACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAG < SRR4302537.1985287/94‑1 (MQ=60)
ACCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAG < SRR4302537.18658/94‑1 (MQ=60)
CCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCGGCGCCAGCATAAAAATTTTGAGCAGAAGG < SRR4302537.1936838/94‑1 (MQ=60)
CCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGG > SRR4302537.2960368/1‑94 (MQ=60)
CCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGG > SRR4302537.726893/1‑94 (MQ=60)
CCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGG > SRR4302537.3727291/1‑94 (MQ=60)
CCCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGG > SRR4302537.3106806/1‑94 (MQ=60)
CCAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGT < SRR4302537.5820639/94‑1 (MQ=60)
CAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTA > SRR4302537.4140128/1‑94 (MQ=60)
CAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTA < SRR4302537.4901697/94‑1 (MQ=60)
CAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTA < SRR4302537.2456311/94‑1 (MQ=60)
CAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTA < SRR4302537.2922897/94‑1 (MQ=60)
CAACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTA > SRR4302537.2112736/1‑94 (MQ=60)
AACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAA < SRR4302537.2104674/94‑1 (MQ=60)
ACGTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAA < SRR4302537.5450444/94‑1 (MQ=60)
GTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATT < SRR4302537.5422828/94‑1 (MQ=60)
GTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATT > SRR4302537.824096/1‑94 (MQ=60)
GTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATT > SRR4302537.3238842/1‑94 (MQ=60)
GTAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATT < SRR4302537.358365/94‑1 (MQ=60)
TAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTG < SRR4302537.6265999/94‑1 (MQ=60)
TAACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTG < SRR4302537.3288575/94‑1 (MQ=60)
ACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTT > SRR4302537.5802527/1‑94 (MQ=60)
ACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTT < SRR4302537.2287659/94‑1 (MQ=60)
ACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTT > SRR4302537.1218487/1‑94 (MQ=60)
ACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTT < SRR4302537.2030020/94‑1 (MQ=60)
ACAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTT < SRR4302537.6038243/94‑1 (MQ=60)
CAAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTG > SRR4302537.6452476/1‑94 (MQ=60)
CAAAACTCAGGCGCGTCCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTG < SRR4302537.2641383/94‑1 (MQ=60)
AAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGG < SRR4302537.6431226/94‑1 (MQ=60)
AAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGG > SRR4302537.2290588/1‑94 (MQ=60)
AAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGG < SRR4302537.1946429/94‑1 (MQ=60)
AAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGG < SRR4302537.913085/94‑1 (MQ=60)
AAAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGG < SRR4302537.4471577/94‑1 (MQ=60)
AACCTCAGGCGCGTTCCACACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGC < SRR4302537.5989522/94‑1 (MQ=60)
AAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGC < SRR4302537.3600592/94‑1 (MQ=60)
AAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGC < SRR4302537.743458/94‑1 (MQ=60)
AAACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGC < SRR4302537.1415315/94‑1 (MQ=60)
AACTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCG > SRR4302537.184103/1‑94 (MQ=60)
CTCAGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTG < SRR4302537.3769484/94‑1 (MQ=60)
CAGGCGCGTTCCCCACGCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGAT < SRR4302537.2419536/94‑1 (MQ=60)
AGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATA < SRR4302537.6220384/94‑1 (MQ=60)
AGGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATA < SRR4302537.4774384/94‑1 (MQ=60)
GGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAA < SRR4302537.337824/94‑1 (MQ=60)
GGCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAA > SRR4302537.5810268/1‑94 (MQ=60)
GCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAAG < SRR4302537.5106128/94‑1 (MQ=60)
GCGCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAAG < SRR4302537.1814870/94‑1 (MQ=60)
GCGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAAGGA < SRR4302537.4626998/94‑1 (MQ=60)
|
AAAGCGCACTTTGTCAAAAATCTAACCTACTTTTTAATTCAGGGAATTACCGCAAAGCCCACGCCATCATACCCAACGTAACAAAACTCAGGCACGTTCCCCACTCGCCCCGAGAAAAATAGCATTAATGCGCCCAGCGCCAGCATAAAAATTTTGAGCAGAAGGTAAATTGTTGGCGTGATAAGGA > NC_000913/3561319‑3561505
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
