Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,562,795	G→A	L474L (CTG→TTG)	glgP ←	glycogen phosphorylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,562,795	0	G	A	100.0%	759.9 / NA	216	L474L (CTG→TTG)	glgP	glycogen phosphorylase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (102/114); total (102/114)

Only 100 of 249 total aligned reads displayed.

GCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCA  >  NC_000913/3562705‑3562884

gCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCgccaacc                                                                                         >  1:1444038/1‑93 (MQ=255)

 cAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCgccaacca                                                                                        <  2:4245584/93‑1 (MQ=255)

 cAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCgccaacca                                                                                        <  1:2333293/93‑1 (MQ=255)

  aGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGccaaccag                                                                                       <  2:2969052/93‑1 (MQ=255)

  aGCTCATTAAGCAGGCTAAGGTCGGTGCCCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGccaaccag                                                                                       <  1:285026/93‑1 (MQ=255)

   gCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCcaaccagc                                                                                      >  1:5401137/1‑93 (MQ=255)

   gCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCcaaccagc                                                                                      >  1:1300785/1‑93 (MQ=255)

   gCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCcaaccagc                                                                                      >  2:2417608/1‑93 (MQ=255)

     tCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACTGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGa                                                                                    >  1:5754001/1‑93 (MQ=255)

     tCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGa                                                                                    >  2:5190886/1‑93 (MQ=255)

     tCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGa                                                                                    <  2:3615329/93‑1 (MQ=255)

      cATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGAc                                                                                   >  1:4846261/1‑93 (MQ=255)

        ttAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGAcgc                                                                                 >  2:4795639/1‑93 (MQ=255)

        ttAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGAcgc                                                                                 >  1:5942424/1‑93 (MQ=255)

         tAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGAcgcg                                                                                <  2:5441817/93‑1 (MQ=255)

           aGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACgcggc                                                                              >  2:3550637/1‑93 (MQ=255)

           aGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACgcggc                                                                              <  1:141224/93‑1 (MQ=255)

           aGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACgcggc                                                                              <  1:1050246/93‑1 (MQ=255)

            gCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACgcggcg                                                                             <  2:3818673/93‑1 (MQ=255)

            gCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACgcggcg                                                                             <  1:6271887/93‑1 (MQ=255)

            gCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACgcggcg                                                                             <  2:796375/93‑1 (MQ=255)

            gCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGAGACgcggcg                                                                             >  1:2729332/1‑93 (MQ=255)

               ggCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTca                                                                          >  2:6443619/1‑93 (MQ=255)

                  tAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCacac                                                                       <  1:2382721/93‑1 (MQ=255)

                   aaGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACAcc                                                                      <  2:3760726/93‑1 (MQ=255)

                    aGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcg                                                                     >  2:3314335/1‑93 (MQ=255)

                     ggTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgt                                                                    >  1:2918784/1‑93 (MQ=255)

                      gTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgtt                                                                   <  2:2331499/93‑1 (MQ=255)

                      gTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgtt                                                                   <  2:5087291/93‑1 (MQ=255)

                      gTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgtt                                                                   <  1:2131078/93‑1 (MQ=255)

                        cGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttgg                                                                 <  1:3585628/93‑1 (MQ=255)

                          gTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtg                                                               >  1:1010193/1‑93 (MQ=255)

                            gcgcCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgac                                                             <  1:3274229/93‑1 (MQ=255)

                            gcgcCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgac                                                             <  1:2552230/93‑1 (MQ=255)

                            gcgcCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgac                                                             <  2:5917285/93‑1 (MQ=255)

                              gcCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgacgt                                                           <  2:2797749/93‑1 (MQ=255)

                              gcCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgacgt                                                           >  2:289607/1‑93 (MQ=255)

                               ccAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgacgtt                                                          >  1:5256291/1‑93 (MQ=255)

                               ccAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgacgtt                                                          >  2:1586538/1‑93 (MQ=255)

                               ccAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgacgtt                                                          >  1:2486947/1‑93 (MQ=255)

                                cAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgacgttg                                                         >  2:1067945/1‑93 (MQ=255)

                                 aGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgacgttgg                                                        >  1:2239802/1‑93 (MQ=255)

                                 aGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgacgttgg                                                        >  1:3735062/1‑93 (MQ=255)

                                  gTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgacgttggt                                                       <  1:3426363/93‑1 (MQ=255)

                                    tACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACcgttggtgacgttggtga                                                     <  2:1860642/93‑1 (MQ=255)

                                       ggCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAAc                                                  <  2:5935352/93‑1 (MQ=255)

                                       ggCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAAc                                                  <  2:5653902/93‑1 (MQ=255)

                                        gCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACg                                                 <  2:3245192/93‑1 (MQ=255)

                                        gCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACg                                                 <  2:4344842/93‑1 (MQ=255)

                                         cccAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGa                                                >  2:444469/1‑93 (MQ=255)

                                          ccAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGAc                                               >  1:1544387/1‑93 (MQ=255)

                                            aGGTGTTCGTCCAGCACTGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGAccc                                             <  2:1219922/93‑1 (MQ=255)

                                            aGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGAccc                                             <  2:5299894/93‑1 (MQ=255)

                                            aGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGAccc                                             <  1:5287548/93‑1 (MQ=255)

                                             ggTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGTTGACGTTGGTGAAACGACCCg                                            >  1:4785039/1‑93 (MQ=255)

                                               tgtTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCggg                                          <  1:1929196/93‑1 (MQ=255)

                                               tgtTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCggg                                          <  1:3797571/93‑1 (MQ=255)

                                                gtTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGa                                         >  1:4198597/1‑93 (MQ=255)

                                                gtTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGa                                         >  2:4974483/1‑93 (MQ=255)

                                                 ttCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGaa                                        <  2:4190742/93‑1 (MQ=255)

                                                      ccAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGAttt                                   <  2:4554203/93‑1 (MQ=255)

                                                      ccAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGAttt                                   >  1:1837017/1‑93 (MQ=255)

                                                        aGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTc                                 >  1:599804/1‑93 (MQ=255)

                                                         gCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGAtttttg                                >  2:1682352/1‑91 (MQ=255)

                                                             ggCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCaaa                            <  1:1197653/93‑1 (MQ=255)

                                                             ggCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCaaa                            <  2:1353773/93‑1 (MQ=255)

                                                             ggCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCaaa                            <  1:5719345/93‑1 (MQ=255)

                                                             ggCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCaaa                            >  2:3677183/1‑93 (MQ=255)

                                                              gCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAg                           <  1:4702808/93‑1 (MQ=255)

                                                               cTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGt                          <  2:448829/93‑1 (MQ=255)

                                                                tGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTc                         >  2:5905269/1‑93 (MQ=255)

                                                                 gAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCg                        <  1:6324536/93‑1 (MQ=255)

                                                                  aaaGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCgg                       >  2:2380071/1‑93 (MQ=255)

                                                                  aaaGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCgg                       >  2:1010701/1‑93 (MQ=255)

                                                                  aaaGCGATGGGTTCGCTACCGCAAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCgg                       >  1:3687001/1‑93 (MQ=255)

                                                                   aaGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGc                      >  1:4071659/1‑93 (MQ=255)

                                                                    aGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCa                     >  2:2241048/1‑93 (MQ=255)

                                                                      cGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCaaa                   <  1:5509849/93‑1 (MQ=255)

                                                                       gATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCaaaa                  >  1:4525517/1‑92 (MQ=255)

                                                                       gATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaac                  >  1:956083/1‑93 (MQ=255)

                                                                       gATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaac                  >  1:509872/1‑93 (MQ=255)

                                                                       gATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACACGGGAAGATTTTCGCAAAGTCGGCAaac                  >  1:6217129/1‑93 (MQ=255)

                                                                        aTGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaaca                 <  2:2056576/93‑1 (MQ=255)

                                                                         tGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaacaa                <  1:3031568/93‑1 (MQ=255)

                                                                         tGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaacaa                >  2:1256159/1‑93 (MQ=255)

                                                                           ggTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACg              >  2:5488169/1‑93 (MQ=255)

                                                                           ggTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACg              >  2:4375267/1‑93 (MQ=255)

                                                                            gTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGa             >  1:5650893/1‑93 (MQ=255)

                                                                             ttCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGAt            <  2:4644329/93‑1 (MQ=255)

                                                                             ttCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGAt            <  1:1677601/93‑1 (MQ=255)

                                                                             ttCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGAt            <  2:2742295/93‑1 (MQ=255)

                                                                               cGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTg          <  2:5633904/93‑1 (MQ=255)

                                                                                gCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGc         >  2:2069658/1‑93 (MQ=255)

                                                                                gCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGc         >  1:171145/1‑93 (MQ=255)

                                                                                  tACCGCCAACCAGCGACGCGGCGTCCCACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCAc       >  1:5038454/1‑93 (MQ=255)

                                                                                    ccGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCa     <  2:4804283/93‑1 (MQ=255)

                                                                                    ccGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCa     <  2:1114992/93‑1 (MQ=255)

                                                                                       ccaaccagCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCTGCAAACAACGATTGCACCATCa  <  2:3151251/93‑1 (MQ=255)

                                                                                       ccaaccagCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCa  <  1:5593493/93‑1 (MQ=255)

                                                                                       ccaaccagCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCa  <  2:5852766/93‑1 (MQ=255)

GCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCA  >  NC_000913/3562705‑3562884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCAGATT  >  NC_000913/3562704‑3562888

TGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACC                                                                                             <  SRR4302537.1811842/94‑1 (MQ=60)

TGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACC                                                                                             >  SRR4302537.5605337/1‑94 (MQ=60)

TGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACC                                                                                             >  SRR4302537.1454096/1‑94 (MQ=60)

  CAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAG                                                                                           <  SRR4302537.2349742/94‑1 (MQ=60)

   AGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGC                                                                                          >  SRR4302537.5438000/1‑94 (MQ=60)

   AGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGC                                                                                          >  SRR4302537.83378/1‑94 (MQ=60)

   AGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGC                                                                                          >  SRR4302537.1309828/1‑94 (MQ=60)

   AGCTCATTAAGCAGGCTAAGGTCGGTGCCCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGC                                                                                          <  SRR4302537.287011/94‑1 (MQ=60)

    GCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCG                                                                                         >  SRR4302537.1856705/1‑94 (MQ=60)

    GCTCATAAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCG                                                                                         <  SRR4302537.6065736/94‑1 (MQ=60)

     CTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACTGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGA                                                                                        >  SRR4302537.5793414/1‑94 (MQ=60)

     CTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGA                                                                                        <  SRR4302537.1688630/94‑1 (MQ=60)

     CTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGA                                                                                        >  SRR4302537.2589526/1‑94 (MQ=60)

      TCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGAC                                                                                       >  SRR4302537.4879705/1‑94 (MQ=60)

      TCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGAC                                                                                       >  SRR4302537.3361586/1‑94 (MQ=60)

      TCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGAC                                                                                       >  SRR4302537.4879706/1‑94 (MQ=60)

        ATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGC                                                                                     <  SRR4302537.1226919/94‑1 (MQ=60)

        ATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGC                                                                                     >  SRR4302537.2143735/1‑94 (MQ=60)

        ATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGC                                                                                     >  SRR4302537.5983209/1‑94 (MQ=60)

        ATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGC                                                                                     >  SRR4302537.5639716/1‑94 (MQ=60)

         TTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCG                                                                                    <  SRR4302537.4969342/94‑1 (MQ=60)

           AAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGC                                                                                  <  SRR4302537.2568469/94‑1 (MQ=60)

           AAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGC                                                                                  >  SRR4302537.995884/1‑94 (MQ=60)

            AGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCG                                                                                 <  SRR4302537.1057489/94‑1 (MQ=60)

            AGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCG                                                                                 <  SRR4302537.142228/94‑1 (MQ=60)

            AGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGAGACGCGGCG                                                                                 >  SRR4302537.2748388/1‑94 (MQ=60)

             GCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGT                                                                                <  SRR4302537.6314930/94‑1 (MQ=60)

               AGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGCCA                                                                              >  SRR4302537.4919127/1‑94 (MQ=60)

                GGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACTGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCTGCGTCAC                                                                             >  SRR4302537.2423821/1‑94 (MQ=60)

                 GCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACA                                                                            <  SRR4302537.3859629/94‑1 (MQ=60)

                   TAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACC                                                                          <  SRR4302537.2399509/94‑1 (MQ=60)

                   TAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACC                                                                          <  SRR4302537.394216/94‑1 (MQ=60)

                   TAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACC                                                                          <  SRR4302537.1348727/94‑1 (MQ=60)

                     AGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGT                                                                        >  SRR4302537.2939296/1‑94 (MQ=60)

                       GTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTG                                                                      <  SRR4302537.2146074/94‑1 (MQ=60)

                         CGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGT                                                                    <  SRR4302537.3610903/94‑1 (MQ=60)

                         CGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGT                                                                    >  SRR4302537.5599545/1‑94 (MQ=60)

                          GGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTG                                                                   >  SRR4302537.1017157/1‑94 (MQ=60)

                             GCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACG                                                                <  SRR4302537.2570128/94‑1 (MQ=60)

                             GCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACG                                                                <  SRR4302537.3297337/94‑1 (MQ=60)

                               GCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTT                                                              >  SRR4302537.2504460/1‑94 (MQ=60)

                               GCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTT                                                              >  SRR4302537.5292461/1‑94 (MQ=60)

                               GCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTT                                                              >  SRR4302537.2812570/1‑94 (MQ=60)

                               GCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTT                                                              <  SRR4302537.1775653/94‑1 (MQ=60)

                                CCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTG                                                             <  SRR4302537.227028/94‑1 (MQ=60)

                                CCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTG                                                             <  SRR4302537.4788069/94‑1 (MQ=60)

                                CCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTG                                                             >  SRR4302537.6359114/1‑94 (MQ=60)

                                CCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGGTG                                                             >  SRR4302537.1211513/1‑94 (MQ=60)

                                 CAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGG                                                            >  SRR4302537.3761297/1‑94 (MQ=60)

                                 CAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGG                                                            >  SRR4302537.2255593/1‑94 (MQ=60)

                                  AGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGT                                                           <  SRR4302537.3052519/94‑1 (MQ=60)

                                   GTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTG                                                          <  SRR4302537.2878328/94‑1 (MQ=60)

                                   GTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTG                                                          <  SRR4302537.2193173/94‑1 (MQ=60)

                                   GTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTG                                                          <  SRR4302537.3450617/94‑1 (MQ=60)

                                    gtacggccccgggtgttgtccaggccgggtggAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGA                                                         <  SRR4302537.5110684/62‑1 (MQ=60)

                                        CGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACG                                                     <  SRR4302537.461153/94‑1 (MQ=60)

                                          CCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGAC                                                   >  SRR4302537.1555170/1‑94 (MQ=60)

                                          CCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGAC                                                   >  SRR4302537.151094/1‑94 (MQ=60)

                                           CCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACC                                                  <  SRR4302537.1577084/94‑1 (MQ=60)

                                             AGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGTTGACGTTGGTGAAACGACCCG                                                >  SRR4302537.4818069/1‑94 (MQ=60)

                                             AGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCG                                                <  SRR4302537.578688/94‑1 (MQ=60)

                                             AGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCG                                                <  SRR4302537.5323900/94‑1 (MQ=60)

                                             AGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCG                                                >  SRR4302537.4335485/1‑94 (MQ=60)

                                              GGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGG                                               >  SRR4302537.2929055/1‑94 (MQ=60)

                                              GGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGG                                               <  SRR4302537.6038285/94‑1 (MQ=60)

                                               GTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGG                                              <  SRR4302537.2452140/94‑1 (MQ=60)

                                               GTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGG                                              <  SRR4302537.5800164/94‑1 (MQ=60)

                                                TGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGA                                             <  SRR4302537.1942585/94‑1 (MQ=60)

                                                TGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGA                                             <  SRR4302537.3824211/94‑1 (MQ=60)

                                                TGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGA                                             >  SRR4302537.4227912/1‑94 (MQ=60)

                                                TGCTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGCCCCGGGA                                             >  SRR4302537.6302513/1‑94 (MQ=60)

                                                 GTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAA                                            >  SRR4302537.3784903/1‑94 (MQ=60)

                                                  TTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAG                                           <  SRR4302537.3478480/94‑1 (MQ=60)

                                                     GTCCAGCACGGCTGAAAGCGATGGGTTCGCTGCCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATT                                        >  SRR4302537.5244708/1‑94 (MQ=60)

                                                      TCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTT                                       >  SRR4302537.1849804/1‑94 (MQ=60)

                                                      TCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTT                                       >  SRR4302537.2089959/1‑94 (MQ=60)

                                                      TCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTT                                       >  SRR4302537.1730194/1‑94 (MQ=60)

                                                       CCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTT                                      >  SRR4302537.5938824/1‑94 (MQ=60)

                                                       CCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTT                                      >  SRR4302537.16995/1‑94 (MQ=60)

                                                        CAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTC                                     <  SRR4302537.3096172/94‑1 (MQ=60)

                                                        CAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTC                                     >  SRR4302537.603906/1‑94 (MQ=60)

                                                         AGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCG                                    >  SRR4302537.2596733/1‑94 (MQ=60)

                                                          GCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGC                                   >  SRR4302537.5164865/1‑94 (MQ=60)

                                                          GCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGC                                   <  SRR4302537.5369274/94‑1 (MQ=60)

                                                          GCACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGC                                   <  SRR4302537.2307209/94‑1 (MQ=60)

                                                           CACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCA                                  <  SRR4302537.1172193/94‑1 (MQ=60)

                                                           CACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCA                                  >  SRR4302537.968026/1‑94 (MQ=60)

                                                            ACGGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAA                                 >  SRR4302537.4752926/1‑94 (MQ=60)

                                                              GGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAG                               <  SRR4302537.5758490/94‑1 (MQ=60)

                                                              GGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAG                               <  SRR4302537.1423946/94‑1 (MQ=60)

                                                              GGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAG                               <  SRR4302537.1205975/94‑1 (MQ=60)

                                                              GGCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAG                               <  SRR4302537.3627139/94‑1 (MQ=60)

                                                               GCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGT                              <  SRR4302537.4735346/94‑1 (MQ=60)

                                                               GCTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGT                              <  SRR4302537.4222463/94‑1 (MQ=60)

                                                                CTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTC                             <  SRR4302537.4486536/94‑1 (MQ=60)

                                                                CTGAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTC                             <  SRR4302537.5312428/94‑1 (MQ=60)

                                                                 TGAAAGTGATGCGTTCACAACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCG                            <  SRR4302537.2520762/94‑1 (MQ=60)

                                                                  GAAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGG                           <  SRR4302537.6367802/94‑1 (MQ=60)

                                                                  GAAAGCGATGGGTTCGCTACCGCAAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGG                           >  SRR4302537.3712933/1‑94 (MQ=60)

                                                                   AAAGCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGC                          >  SRR4302537.4100092/1‑94 (MQ=60)

                                                                      GCGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAA                       <  SRR4302537.1023122/94‑1 (MQ=60)

                                                                       CGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAAC                      >  SRR4302537.513371/1‑94 (MQ=60)

                                                                       CGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAAC                      >  SRR4302537.962676/1‑94 (MQ=60)

                                                                       CGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAAC                      <  SRR4302537.5547476/94‑1 (MQ=60)

                                                                       CGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAAC                      >  SRR4302537.1428795/1‑94 (MQ=60)

                                                                       CGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAAA                      >  SRR4302537.4556831/1‑94 (MQ=60)

                                                                       CGATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACACGGGAAGATTTTCGCAAAGTCGGCAAAC                      >  SRR4302537.6259940/1‑94 (MQ=60)

                                                                        GATGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACA                     >  SRR4302537.3736639/1‑94 (MQ=60)

                                                                          TGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAAC                   <  SRR4302537.539552/94‑1 (MQ=60)

                                                                          TGGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAAC                   <  SRR4302537.3052703/94‑1 (MQ=60)

                                                                           GGGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACG                  <  SRR4302537.3469626/94‑1 (MQ=60)

                                                                            GGTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGA                 >  SRR4302537.5689566/1‑94 (MQ=60)

                                                                             GTTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGAT                <  SRR4302537.6365979/94‑1 (MQ=60)

                                                                              TTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATT               <  SRR4302537.1689345/94‑1 (MQ=60)

                                                                              TTCGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATT               <  SRR4302537.6209454/94‑1 (MQ=60)

                                                                                CGCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGC             >  SRR4302537.172364/1‑94 (MQ=60)

                                                                                 GCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCA            <  SRR4302537.2395910/94‑1 (MQ=60)

                                                                                 GCTACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCA            <  SRR4302537.5529951/94‑1 (MQ=60)

                                                                                  CTACCGCCAACCAGCGACGCGGCGTCCCACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCAC           >  SRR4302537.5073138/1‑94 (MQ=60)

                                                                                    ACCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCA         >  SRR4302537.572839/1‑94 (MQ=60)

                                                                                     CCGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCAT        <  SRR4302537.5757035/94‑1 (MQ=60)

                                                                                      CGCCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATC       >  SRR4302537.3742536/1‑94 (MQ=60)

                                                                                        CCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCAG     <  SRR4302537.3197116/94‑1 (MQ=60)

                                                                                        CCAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCAG     <  SRR4302537.5631735/94‑1 (MQ=60)

                                                                                         CAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCAGA    <  SRR4302537.5870603/94‑1 (MQ=60)

                                                                                         CAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCAGA    >  SRR4302537.4997807/1‑94 (MQ=60)

                                                                                         CAACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCAGA    >  SRR4302537.990527/1‑94 (MQ=60)

                                                                                          AACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCAGAT   <  SRR4302537.3847489/94‑1 (MQ=60)

                                                                                           ACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCAGATT  >  SRR4302537.3863234/1‑94 (MQ=60)

                                                                                           ACCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCAGATT  >  SRR4302537.2254301/1‑94 (MQ=60)

TGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCATCAGATT  >  NC_000913/3562704‑3562888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`