Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,573,700	+C	intergenic (+403/+997)	yhgN → / ← gntK	hypothetical protein/gluconokinase 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,573,700	1	.	C	100.0%	750.7 / NA	217	intergenic (+403/+997)	yhgN/gntK	hypothetical protein/gluconokinase 2
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (127/90); total (127/90)

Only 100 of 241 total aligned reads displayed.

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG  >  NC_000913/3573608‑3573786

aaCAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACg                                                                                         <  1:5426247/93‑1 (MQ=255)

aaCAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACg                                                                                         >  2:3397990/1‑93 (MQ=255)

   aGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgctt                                                                                      <  1:3265666/93‑4 (MQ=255)

    ggCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgcttc                                                                                     >  2:5103783/1‑89 (MQ=255)

    ggCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgcttc                                                                                     >  1:4090771/1‑89 (MQ=255)

       tACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGcc                                                                                  >  1:1127235/1‑93 (MQ=255)

       tACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGcc                                                                                  <  1:2938001/93‑1 (MQ=255)

        aCGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGccc                                                                                 >  2:6018024/1‑93 (MQ=255)

        aCGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCCGTTAACGCTTCGccc                                                                                 >  2:4373154/1‑93 (MQ=255)

         cGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCa                                                                                >  2:4648930/1‑93 (MQ=255)

         cGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCa                                                                                >  1:1051643/1‑93 (MQ=255)

          ggTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAg                                                                               >  2:2218597/1‑93 (MQ=255)

          ggTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGCGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAg                                                                               <  1:3468496/93‑1 (MQ=255)

           gTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGt                                                                              <  1:1790841/93‑1 (MQ=255)

            tGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTg                                                                             <  1:833583/93‑1 (MQ=255)

              gCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGcc                                                                           >  1:3550425/1‑93 (MQ=255)

              gCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGcc                                                                           >  2:2624701/1‑93 (MQ=255)

               cAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCAATGGCGGTTAACGCTTCGCCCAGttcag                                                                          >  1:3917175/1‑89 (MQ=255)

                  aaCCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGAc                                                                       <  1:5297227/93‑1 (MQ=255)

                   aCCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGAcc                                                                      <  2:5592/93‑1 (MQ=255)

                   aCCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGAcc                                                                      >  1:5504923/1‑93 (MQ=255)

                   aCCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGAcc                                                                      >  2:1766236/1‑93 (MQ=255)

                   aCCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGAcc                                                                      >  2:4829386/1‑93 (MQ=255)

                    cccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCt                                                                     >  1:5851302/1‑93 (MQ=255)

                    cccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCt                                                                     <  1:6230951/93‑1 (MQ=255)

                    cccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCt                                                                     >  2:1892066/1‑93 (MQ=255)

                    cccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCt                                                                     <  1:4614770/93‑1 (MQ=255)

                    cccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCt                                                                     <  1:3973722/93‑1 (MQ=255)

                     ccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTa                                                                    <  1:6164024/93‑1 (MQ=255)

                     ccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTa                                                                    <  1:2181324/93‑1 (MQ=255)

                     ccTGAATAATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTa                                                                    <  2:4070411/93‑1 (MQ=255)

                      cTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTAc                                                                   >  1:1641213/1‑93 (MQ=255)

                      cTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTAc                                                                   >  2:3036358/1‑93 (MQ=255)

                       tGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACg                                                                  >  2:5890041/1‑93 (MQ=255)

                         aaTGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGcc                                                                >  2:3571348/1‑93 (MQ=255)

                           tgatgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCag                                                              >  2:5401594/1‑93 (MQ=255)

                               gcgcACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTc                                                          >  1:5906307/1‑93 (MQ=255)

                                cgcACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCa                                                         >  1:4449574/1‑93 (MQ=255)

                                 gcACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCaa                                                        <  1:5088178/93‑1 (MQ=255)

                                 gcACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCaa                                                        >  1:1997535/1‑93 (MQ=255)

                                    cTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCa                                                     >  2:1853837/1‑93 (MQ=255)

                                    cTGCAGCTCCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCa                                                     <  2:388399/93‑1 (MQ=255)

                                     tGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAg                                                    >  2:4248093/1‑93 (MQ=255)

                                      gCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGc                                                   <  1:2449891/93‑1 (MQ=255)

                                       cAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCa                                                  <  2:2093414/93‑1 (MQ=255)

                                        aGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCAc                                                 >  2:2891519/1‑93 (MQ=255)

                                           tGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTg                                              >  1:6089922/1‑93 (MQ=255)

                                             ccAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGtt                                            >  2:2423119/1‑93 (MQ=255)

                                              cAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGttt                                           >  1:2773634/1‑93 (MQ=255)

                                               aGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTg                                          >  1:3873236/1‑93 (MQ=255)

                                               aGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTg                                          <  1:80838/93‑1 (MQ=255)

                                                gCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGa                                         <  1:2231870/93‑1 (MQ=255)

                                                   cGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAaca                                      <  1:1566930/93‑1 (MQ=255)

                                                   cGAAGCAGGTGATAACAATCGGCAGTCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAaca                                      <  2:145957/93‑1 (MQ=255)

                                                    gAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAacac                                     >  2:3490923/1‑93 (MQ=255)

                                                     aaGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcg                                    <  2:5961740/93‑1 (MQ=255)

                                                      aGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcgc                                   <  1:5272666/93‑1 (MQ=255)

                                                       gCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcgcc                                  <  1:5293720/93‑1 (MQ=255)

                                                          ggTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACgccgcc                               >  2:1636387/1‑93 (MQ=255)

                                                          ggTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACgccgcc                               >  2:666595/1‑93 (MQ=255)

                                                                aGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCAcc                         >  2:3912894/1‑93 (MQ=255)

                                                                   aaTCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAAt                      <  1:2564535/93‑1 (MQ=255)

                                                                   aaTCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAAt                      >  2:6206618/1‑93 (MQ=255)

                                                                    aTCGGCAGTCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATc                     <  2:2009285/93‑1 (MQ=255)

                                                                    aTCGGCAGGCCCATGCCGGTTAACGCTTCGCCCCGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATc                     >  2:1215980/1‑93 (MQ=255)

                                                                    aTCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATc                     <  2:850197/93‑1 (MQ=255)

                                                                    aTCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATc                     >  2:75911/1‑93 (MQ=255)

                                                                    aTCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATc                     >  1:4314345/1‑93 (MQ=255)

                                                                     tCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCa                    >  1:4718126/1‑93 (MQ=255)

                                                                     acGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCa                    <  2:2733087/92‑1 (MQ=255)

                                                                       ggCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCAcc                  >  2:1360336/1‑93 (MQ=255)

                                                                       ggCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCAcc                  >  2:359981/1‑93 (MQ=255)

                                                                       ggCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCAcc                  >  2:4797244/1‑93 (MQ=255)

                                                                        gCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACca                 <  1:1949753/93‑1 (MQ=255)

                                                                        gCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACca                 <  1:2668684/93‑1 (MQ=255)

                                                                          aGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagc               >  1:2117807/1‑93 (MQ=255)

                                                                           ggCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCCACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagca              >  2:6379095/1‑93 (MQ=255)

                                                                           ggCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagca              >  1:1627031/1‑93 (MQ=255)

                                                                           ggCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagca              <  2:5146124/93‑1 (MQ=255)

                                                                           ggCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagca              <  1:3780878/93‑1 (MQ=255)

                                                                           ggCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagca              >  1:6419629/1‑93 (MQ=255)

                                                                             cccATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGa            <  2:3526416/93‑1 (MQ=255)

                                                                              ccATCCCGGTTACCGCTGCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGaa           <  2:4628337/93‑1 (MQ=255)

                                                                               cATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAt          >  1:4165757/1‑93 (MQ=255)

                                                                               cATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAt          <  2:4722245/93‑1 (MQ=255)

                                                                                 tGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGGATGa        >  1:666226/1‑93 (MQ=255)

                                                                                 tGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGa        >  1:5026655/1‑93 (MQ=255)

                                                                                 tGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGa        >  1:1597373/1‑93 (MQ=255)

                                                                                  gCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGAt       >  1:4041104/1‑93 (MQ=255)

                                                                                  gCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGAt       <  1:731751/93‑1 (MQ=255)

                                                                                  gCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGAt       >  2:5509472/1‑93 (MQ=255)

                                                                                   ccGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATc      >  1:1257466/1‑93 (MQ=255)

                                                                                    cGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcc     <  1:99985/93‑1 (MQ=255)

                                                                                    cGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcc     >  2:3227868/1‑93 (MQ=255)

                                                                                    cGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcc     <  1:1872305/93‑1 (MQ=255)

                                                                                     ggTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATccc    >  2:1416182/1‑93 (MQ=255)

                                                                                     ggTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATccc    <  2:317156/93‑1 (MQ=255)

                                                                                      gTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcccc   <  2:6160059/93‑1 (MQ=255)

                                                                                      gTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcccc   >  1:3057591/1‑93 (MQ=255)

                                                                                       ttAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCccg  >  1:108497/1‑93 (MQ=255)

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG  >  NC_000913/3573608‑3573786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CG‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGGTTG  >  NC_000913/3573608‑3573793

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CG‑C                                                                                              <  SRR4302537.5463239/94‑1 (MQ=60)

  CAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGGTAA‑CGctt                                                                                             >  SRR4302537.2768356/1‑91 (MQ=60)

   AGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTC                                                                                            <  SRR4302537.3288700/94‑1 (MQ=60)

   AGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTC                                                                                            >  SRR4302537.4119342/1‑94 (MQ=60)

    GGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCG                                                                                           <  SRR4302537.2205118/94‑1 (MQ=60)

    GGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCG                                                                                           <  SRR4302537.5832047/94‑1 (MQ=60)

      CTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCC                                                                                         >  SRR4302537.1082142/1‑94 (MQ=60)

      CTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCC                                                                                         >  SRR4302537.1135054/1‑94 (MQ=60)

      CTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCC                                                                                         <  SRR4302537.195243/94‑1 (MQ=60)

      CTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCC                                                                                         >  SRR4302537.5367810/1‑94 (MQ=60)

       TACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGTCCAGGCCGGTTAACCC‑TTCGCCC                                                                                        >  SRR4302537.2510888/1‑94 (MQ=60)

       TACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCC                                                                                        <  SRR4302537.2958628/94‑1 (MQ=60)

        ACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCA                                                                                       >  SRR4302537.1058897/1‑94 (MQ=60)

        ACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCA                                                                                       >  SRR4302537.4403605/1‑94 (MQ=60)

          GGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGT                                                                                     <  SRR4302537.3020886/94‑1 (MQ=60)

          GGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGCTAA‑CGCTTCGCCCAcg                                                                                     >  SRR4302537.4548543/1‑92 (MQ=60)

          GGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGCGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGT                                                                                     <  SRR4302537.3493032/94‑1 (MQ=60)

           GTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTG                                                                                    <  SRR4302537.1803345/94‑1 (MQ=60)

            gggcggaacccgaAATGAGGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGCCAGCCCCATGCCGGTTAA‑CGCTTCGCCCAGTGC                                                                                   <  SRR4302537.72299/81‑1 (MQ=60)

            TGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGC                                                                                   <  SRR4302537.839289/94‑1 (MQ=60)

             GGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCC                                                                                  >  SRR4302537.3575501/1‑94 (MQ=60)

              GCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCAATGGCGGTTAA‑CGCTTCGCCCAGTtcag                                                                                 >  SRR4302537.3944553/1‑90 (MQ=60)

               CAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGG                                                                                >  SRR4302537.5095730/1‑94 (MQ=60)

                AGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGA                                                                               >  SRR4302537.2325600/1‑94 (MQ=60)

                AGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGA                                                                               >  SRR4302537.5330512/1‑94 (MQ=60)

                 GAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGAC                                                                              >  SRR4302537.551435/1‑94 (MQ=60)

                  AACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACC                                                                             >  SRR4302537.5542513/1‑94 (MQ=60)

                  AACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACC                                                                             <  SRR4302537.5333617/94‑1 (MQ=60)

                   ACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCT                                                                            >  SRR4302537.5891442/1‑94 (MQ=60)

                   ACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCCTCGCCCAGGGCCGGACCT                                                                            >  SRR4302537.388975/1‑94 (MQ=60)

                    CCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTA                                                                           <  SRR4302537.4001541/94‑1 (MQ=60)

                    CCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTA                                                                           <  SRR4302537.1235063/94‑1 (MQ=60)

                    CCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTA                                                                           >  SRR4302537.604143/1‑94 (MQ=60)

                    CCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTA                                                                           <  SRR4302537.6273813/94‑1 (MQ=60)

                    CCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTA                                                                           <  SRR4302537.4646727/94‑1 (MQ=60)

                     CCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTAC                                                                          <  SRR4302537.6206450/94‑1 (MQ=60)

                     CCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTAC                                                                          >  SRR4302537.906061/1‑94 (MQ=60)

                     CCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTAC                                                                          <  SRR4302537.2196691/94‑1 (MQ=60)

                     CCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTAC                                                                          >  SRR4302537.1652709/1‑94 (MQ=60)

                      CTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACG                                                                         <  SRR4302537.2669438/94‑1 (MQ=60)

                       TGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGC                                                                        >  SRR4302537.1657912/1‑94 (MQ=60)

                       TGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGC                                                                        >  SRR4302537.5927522/1‑94 (MQ=60)

                       TGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGC                                                                        >  SRR4302537.390668/1‑94 (MQ=60)

                       TGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGC                                                                        >  SRR4302537.2002340/1‑94 (MQ=60)

                            tatcCGCACTGTAGCTGCCAGCACGAAGCAGGTGATAGTAATCGGCAGTTCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAG                                                                   <  SRR4302537.5645338/90‑1 (MQ=60)

                            GATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAG                                                                   <  SRR4302537.3854709/94‑1 (MQ=60)

                            GATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAG                                                                   >  SRR4302537.4087617/1‑94 (MQ=60)

                              TGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTC                                                                 >  SRR4302537.5946836/1‑94 (MQ=60)

                              TGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTC                                                                 <  SRR4302537.1732969/94‑1 (MQ=60)

                               GCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCA                                                                >  SRR4302537.4480304/1‑94 (MQ=60)

                                CGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAA                                                               >  SRR4302537.4210228/1‑94 (MQ=60)

                                CGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAA                                                               >  SRR4302537.2011424/1‑94 (MQ=60)

                                 GCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAAC                                                              <  SRR4302537.5123208/94‑1 (MQ=60)

                                  CACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACC                                                             <  SRR4302537.5318295/94‑1 (MQ=60)

                                  CACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACC                                                             <  SRR4302537.1150562/94‑1 (MQ=60)

                                  CACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACC                                                             <  SRR4302537.529296/94‑1 (MQ=60)

                                  CACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGGTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACC                                                             >  SRR4302537.4686148/1‑94 (MQ=60)

                                   ACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTAAACCA                                                            <  SRR4302537.1888762/94‑1 (MQ=60)

                                   ACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGGCAACCA                                                            >  SRR4302537.2178529/1‑94 (MQ=60)

                                     TGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGC                                                          >  SRR4302537.399964/1‑94 (MQ=60)

                                      GCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCA                                                         <  SRR4302537.2467126/94‑1 (MQ=60)

                                        AGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACC                                                       >  SRR4302537.3334041/1‑94 (MQ=60)

                                          CTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTG                                                     >  SRR4302537.6131762/1‑94 (MQ=60)

                                            GCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTT                                                   >  SRR4302537.2773800/1‑94 (MQ=60)

                                            GCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTT                                                   <  SRR4302537.823482/94‑1 (MQ=60)

                                            GCCAGCACGAAGCAGCTGATAGCAATCGGCAGGCCCATGCCGCTTAA‑CGCTTCGCTCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTT                                                   <  SRR4302537.6203356/94‑1 (MQ=60)

                                             CCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCTCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTT                                                  >  SRR4302537.3956316/1‑94 (MQ=60)

                                             CCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTT                                                  <  SRR4302537.5273836/94‑1 (MQ=60)

                                             CCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTT                                                  >  SRR4302537.2119499/1‑94 (MQ=60)

                                             CCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTT                                                  >  SRR4302537.2793021/1‑94 (MQ=60)

                                              CAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTG                                                 <  SRR4302537.3704023/94‑1 (MQ=60)

                                              CAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTG                                                 >  SRR4302537.3900334/1‑94 (MQ=60)

                                              CAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTG                                                 >  SRR4302537.2815814/1‑94 (MQ=60)

                                               AGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGA                                                <  SRR4302537.81432/94‑1 (MQ=60)

                                                GCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAA                                               <  SRR4302537.2247615/94‑1 (MQ=60)

                                                  ACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACA                                             <  SRR4302537.705602/94‑1 (MQ=60)

                                                   CGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAC                                            <  SRR4302537.1577865/94‑1 (MQ=60)

                                                    GAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACG                                           >  SRR4302537.2389845/1‑94 (MQ=60)

                                                      AGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCC                                         <  SRR4302537.6057849/94‑1 (MQ=60)

                                                      AGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCC                                         <  SRR4302537.5308952/94‑1 (MQ=60)

                                                       GCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCG                                        <  SRR4302537.5330094/94‑1 (MQ=60)

                                                        CAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGC                                       >  SRR4302537.1857290/1‑94 (MQ=60)

                                                          GGTGATAGCAATCGGCAGGCCCATGCCGGTTCA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCC                                     <  SRR4302537.6263760/94‑1 (MQ=60)

                                                          GGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCC                                     >  SRR4302537.4938382/1‑94 (MQ=60)

                                                           GTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCG                                    <  SRR4302537.1109701/94‑1 (MQ=60)

                                                            TGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGC                                   >  SRR4302537.479135/1‑94 (MQ=60)

                                                              ATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCAC                                 <  SRR4302537.3214788/94‑1 (MQ=60)

                                                              ATAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCAC                                 >  SRR4302537.341945/1‑94 (MQ=60)

                                                               TAGCAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACC                                <  SRR4302537.4447691/94‑1 (MQ=60)

                                                                  CAATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAAT                             >  SRR4302537.6358998/1‑94 (MQ=60)

                                                                   AATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATC                            <  SRR4302537.2582504/94‑1 (MQ=60)

                                                                   AATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATC                            >  SRR4302537.4344333/1‑94 (MQ=60)

                                                                    ATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCA                           >  SRR4302537.4750751/1‑94 (MQ=60)

                                                                    ATCGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCA                           >  SRR4302537.4010880/1‑94 (MQ=60)

                                                                      CGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACC                         >  SRR4302537.5576814/1‑94 (MQ=60)

                                                                      CGGCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACC                         <  SRR4302537.1588589/94‑1 (MQ=60)

                                                                        GCAGTCCCATGGCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAG                       <  SRR4302537.1600229/94‑1 (MQ=60)

                                                                        GCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAG                       <  SRR4302537.2687328/94‑1 (MQ=60)

                                                                        GCAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAG                       <  SRR4302537.1963311/94‑1 (MQ=60)

                                                                         CAGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGC                      >  SRR4302537.2132721/1‑94 (MQ=60)

                                                                          AGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCA                     >  SRR4302537.1638407/1‑94 (MQ=60)

                                                                          AGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCA                     >  SRR4302537.743506/1‑94 (MQ=60)

                                                                          AGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCA                     >  SRR4302537.6463273/1‑94 (MQ=60)

                                                                          AGGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCA                     <  SRR4302537.6303435/94‑1 (MQ=60)

                                                                           GGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAG                    >  SRR4302537.1297884/1‑94 (MQ=60)

                                                                           GGCCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAG                    <  SRR4302537.3807431/94‑1 (MQ=60)

                                                                             CCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAA                  >  SRR4302537.2161775/1‑94 (MQ=60)

                                                                             CCCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGACAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACTAGCTGAA                  >  SRR4302537.5170034/1‑94 (MQ=60)

                                                                              CCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAT                 >  SRR4302537.5436586/1‑94 (MQ=60)

                                                                              CCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAT                 >  SRR4302537.4194850/1‑94 (MQ=60)

                                                                              CCATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAT                 >  SRR4302537.3523876/1‑94 (MQ=60)

                                                                                ATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGGATGA               >  SRR4302537.670771/1‑94 (MQ=60)

                                                                                ATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGA               >  SRR4302537.5061270/1‑94 (MQ=60)

                                                                                ATGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGA               >  SRR4302537.1608532/1‑94 (MQ=60)

                                                                                 TGCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGAT              >  SRR4302537.4069372/1‑94 (MQ=60)

                                                                                  GCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATC             >  SRR4302537.1266222/1‑94 (MQ=60)

                                                                                  GCCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATC             <  SRR4302537.736743/94‑1 (MQ=60)

                                                                                   CCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCC            >  SRR4302537.858244/1‑94 (MQ=60)

                                                                                   CCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCC            >  SRR4302537.1617320/1‑94 (MQ=60)

                                                                                   CCGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCC            >  SRR4302537.3036088/1‑94 (MQ=60)

                                                                                    CGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCC           <  SRR4302537.1885335/94‑1 (MQ=60)

                                                                                    CGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCC           <  SRR4302537.100706/94‑1 (MQ=60)

                                                                                    CGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCC           <  SRR4302537.1650346/94‑1 (MQ=60)

                                                                                    CGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCC           <  SRR4302537.6482928/94‑1 (MQ=60)

                                                                                    CGGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCC           >  SRR4302537.4193369/1‑94 (MQ=60)

                                                                                     GGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCC          >  SRR4302537.3078896/1‑94 (MQ=60)

                                                                                     GGTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCC          >  SRR4302537.4175878/1‑94 (MQ=60)

                                                                                      GTTAA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG         >  SRR4302537.109290/1‑94 (MQ=60)

                                                                                      GTTAA‑CGCTTCGCCAAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG         >  SRR4302537.716288/1‑94 (MQ=60)

                                                                                         AA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCG      >  SRR4302537.2328691/1‑94 (MQ=60)

                                                                                         AA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCG      >  SRR4302537.3686456/1‑94 (MQ=60)

                                                                                         AA‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCG      <  SRR4302537.1235991/94‑1 (MQ=60)

                                                                                          A‑CGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGG     >  SRR4302537.1938448/1‑94 (MQ=60)

                                                                                            CC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGGTT   <  SRR4302537.455869/94‑1 (MQ=60)

                                                                                             C‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGGTTG  >  SRR4302537.1762154/1‑94 (MQ=60)

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAA‑CG‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGGTTG  >  NC_000913/3573608‑3573793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`