Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,575,446	+G	coding (912/942 nt)	gntR ←	GntR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,575,445	1	.	G	99.5%	732.4 / ‑4.0	215	coding (913/942 nt)	gntR	GntR
Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (116/98); total (117/98)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 244 total aligned reads displayed.

ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC  >  NC_000913/3575353‑3575532

aTTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcag‑ca                                                                                          <  2:5110884/93‑1 (MQ=255)

aTTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcag‑ca                                                                                          <  2:4355325/93‑1 (MQ=255)

  ttGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcag‑ca‑gg                                                                                       <  2:2567288/93‑2 (MQ=255)

   tgtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcag‑ca‑ggc                                                                                      <  1:690419/93‑3 (MQ=255)

   tgtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcag‑ca‑ggc                                                                                      >  2:5536592/1‑91 (MQ=255)

    gtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcag‑ca‑ggcg                                                                                     >  2:6348661/1‑90 (MQ=255)

     tgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcag‑ca‑ggcgt                                                                                    <  2:313059/93‑5 (MQ=255)

          ttAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAgc                                                                                <  1:4832445/93‑1 (MQ=255)

          ttAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAgc                                                                                >  1:3588079/1‑93 (MQ=255)

           tAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAgcg                                                                               >  2:5185176/1‑93 (MQ=255)

           tAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAgcg                                                                               <  1:5558841/93‑1 (MQ=255)

            aaaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAgcgc                                                                              >  2:4961065/1‑93 (MQ=255)

            aaaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAgcgc                                                                              >  1:3179093/1‑93 (MQ=255)

               tAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCaa                                                                           >  2:5969653/1‑93 (MQ=255)

               aaGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCaa                                                                           <  1:821099/92‑1 (MQ=255)

                aGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAAt                                                                          >  2:46120/1‑93 (MQ=255)

                 gATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATa                                                                         <  1:5241800/93‑1 (MQ=255)

                  aTCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATAc                                                                        <  2:1596686/93‑1 (MQ=255)

                   tCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACt                                                                       <  1:2395038/93‑1 (MQ=255)

                   tCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACt                                                                       <  1:5851905/93‑1 (MQ=255)

                      gCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGcc                                                                    >  2:3108466/1‑93 (MQ=255)

                       cccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGccc                                                                   <  2:408168/93‑1 (MQ=255)

                       cccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGccc                                                                   >  2:1814847/1‑93 (MQ=255)

                        ccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCa                                                                  <  1:2007280/93‑1 (MQ=255)

                        ccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCa                                                                  <  1:1400816/93‑1 (MQ=255)

                        ccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCa                                                                  >  1:1195992/1‑93 (MQ=255)

                        ccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCa                                                                  >  2:4648763/1‑93 (MQ=255)

                          ggTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATATTGCCCATc                                                                <  2:6309741/93‑1 (MQ=255)

                          ggTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATc                                                                <  2:1341889/93‑1 (MQ=255)

                           gTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATcc                                                               >  2:643110/1‑93 (MQ=255)

                            tGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCg                                                              >  1:291464/1‑93 (MQ=255)

                             gACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGc                                                             >  1:1877502/1‑93 (MQ=255)

                             gACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGc                                                             >  2:3927184/1‑93 (MQ=255)

                              aCAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCt                                                            >  1:1100307/1‑93 (MQ=255)

                               cAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTc                                                           >  2:3168334/1‑93 (MQ=255)

                               cAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTc                                                           >  2:2466505/1‑93 (MQ=255)

                                 aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc                                                         >  2:5642387/1‑93 (MQ=255)

                                 aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc                                                         >  1:3341169/1‑93 (MQ=255)

                                 aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc                                                         <  2:1868053/93‑1 (MQ=255)

                                 aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc                                                         >  2:2013905/1‑93 (MQ=255)

                                  gttGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcg                                                        <  2:1406972/91‑1 (MQ=255)

                                   gTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgc                                                       <  1:6029118/93‑1 (MQ=255)

                                   gTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgc                                                       <  2:4937462/93‑1 (MQ=255)

                                    tGAACCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgcg                                                      <  2:3350754/93‑1 (MQ=255)

                                    tGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgcg                                                      >  2:1014401/1‑93 (MQ=255)

                                    tGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgcg                                                      <  2:5789082/93‑1 (MQ=255)

                                     gAAACGTAAATCTAACATTGCCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCTTTCAGCGCCAATACTGCCCATCCGCTCGCgcgg                                                     <  2:4180868/93‑1 (MQ=255)

                                       aaCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcggcg                                                   >  2:2150984/1‑93 (MQ=255)

                                        aCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGt                                                  >  1:4665015/1‑93 (MQ=255)

                                          cTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa                                                >  2:4517100/1‑93 (MQ=255)

                                           tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAg                                               >  2:617949/1‑93 (MQ=255)

                                             aaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa                                             >  2:3652903/1‑93 (MQ=255)

                                             aaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa                                             <  1:279292/93‑1 (MQ=255)

                                             aaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa                                             >  1:1032467/1‑93 (MQ=255)

                                              aTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAc                                            <  1:4919204/93‑1 (MQ=255)

                                                cTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGc                                          >  1:1668475/1‑93 (MQ=255)

                                                 tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCt                                         >  1:6361932/1‑93 (MQ=255)

                                                   aCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCg                                       <  1:2337794/93‑1 (MQ=255)

                                                    cATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGc                                      >  2:750293/1‑93 (MQ=255)

                                                     aTTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCa                                     >  1:5509252/1‑93 (MQ=255)

                                                     aTTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCa                                     <  1:3554165/93‑1 (MQ=255)

                                                      ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCaa                                    >  2:543043/1‑93 (MQ=255)

                                                      ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCaa                                    >  2:2086550/1‑93 (MQ=255)

                                                       tttCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAg                                   <  1:4076834/93‑1 (MQ=255)

                                                        ttCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGt                                  >  2:4887619/1‑93 (MQ=255)

                                                         tCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTc                                 >  2:1563688/1‑93 (MQ=255)

                                                          cGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACCCGGCGTCAGCACGCTCGCAAGTCg                                >  1:4308204/1‑93 (MQ=255)

                                                           ggTGTCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGt                               <  2:269719/93‑1 (MQ=255)

                                                            gtgtCACAGATTCGCCACGAATACGCGCCAGCCG‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg                              >  2:1187344/1‑93 (MQ=255)

                                                            gtgtCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCATGTCGTg                              <  2:5371701/93‑1 (MQ=255)

                                                            gtgtCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg                              >  1:1075871/1‑93 (MQ=255)

                                                             tgtCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTgg                             <  1:1631902/93‑1 (MQ=255)

                                                             tgtCACAGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTgg                             <  1:398698/93‑1 (MQ=255)

                                                                 acaGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTcc                         >  2:3201356/1‑93 (MQ=255)

                                                                 acaGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTcc                         >  2:4805142/1‑93 (MQ=255)

                                                                  caGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCa                        >  1:486407/1‑93 (MQ=255)

                                                                  caGATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCa                        >  1:4376879/1‑93 (MQ=255)

                                                                    gATTCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATc                      >  2:737458/1‑93 (MQ=255)

                                                                      ttCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAc                    >  1:4650269/1‑93 (MQ=255)

                                                                       tCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAcc                   <  1:5434852/93‑1 (MQ=255)

                                                                       tCGCCACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAcc                   <  2:606515/93‑1 (MQ=255)

                                                                          ccACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGa                <  1:6287959/93‑1 (MQ=255)

                                                                           cACGAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAc               <  2:3518598/93‑1 (MQ=255)

                                                                              gAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCCCCTGACCaa            >  2:2944629/1‑93 (MQ=255)

                                                                              gAATACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCaa            >  2:2191029/1‑93 (MQ=255)

                                                                                aTACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATg          >  1:1018414/1‑93 (MQ=255)

                                                                                 tACGCGCCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGt         <  2:6238755/93‑1 (MQ=255)

                                                                                    gcgcCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATTAACTGACCAATGGCAt      >  2:1528651/1‑93 (MQ=255)

                                                                                    gcgcCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAt      <  2:6130323/93‑1 (MQ=255)

                                                                                     cgcCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATg     <  1:6095108/93‑1 (MQ=255)

                                                                                     cgcCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATg     <  1:3035334/93‑1 (MQ=255)

                                                                                      gcCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGa    <  1:1320163/93‑1 (MQ=255)

                                                                                      gcCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGa    <  2:285785/93‑1 (MQ=255)

                                                                                      gcCAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGa    <  2:2252579/93‑1 (MQ=255)

                                                                                       ccAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAc   <  1:4164118/93‑1 (MQ=255)

                                                                                       ccAG‑CAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAc   <  1:5167195/93‑1 (MQ=255)

                                                                                        cag‑cagGCGTTCAGCTCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAcc  >  1:4198498/1‑93 (MQ=255)

                                                                                        cag‑cagGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAcc  >  1:3886962/1‑93 (MQ=255)

                                                                                        cag‑cagGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAcc  <  2:109119/93‑1 (MQ=255)

                                                                                        cag‑cagGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAcc  >  1:1496274/1‑93 (MQ=255)

ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAG‑CA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC  >  NC_000913/3575353‑3575532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAAA  >  NC_000913/3575353‑3575539

ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G                                                                                               <  SRR4302537.4439602/94‑1 (MQ=60)

ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G                                                                                               <  SRR4302537.1310541/94‑1 (MQ=60)

ATTGGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G                                                                                               <  SRR4302537.5485530/94‑1 (MQ=60)

   TGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑Ggcg                                                                                            <  SRR4302537.695150/94‑4 (MQ=60)

   TGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑Ggcg                                                                                            >  SRR4302537.1999746/1‑91 (MQ=60)

     TGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTT                                                                                           >  SRR4302537.4728068/1‑94 (MQ=60)

     TGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTT                                                                                           >  SRR4302537.1102753/1‑94 (MQ=60)

       GGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCA                                                                                         <  SRR4302537.2848809/94‑1 (MQ=60)

        GCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAG                                                                                        <  SRR4302537.6296245/94‑1 (MQ=60)

         CTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGC                                                                                       >  SRR4302537.3613374/1‑94 (MQ=60)

          TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCG                                                                                      <  SRR4302537.998686/94‑1 (MQ=60)

          TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCG                                                                                      <  SRR4302537.4197546/94‑1 (MQ=60)

          TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCG                                                                                      >  SRR4302537.3410109/1‑94 (MQ=60)

          TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCG                                                                                      <  SRR4302537.4865813/94‑1 (MQ=60)

          TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCG                                                                                      <  SRR4302537.4865814/94‑1 (MQ=60)

           TAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGC                                                                                     >  SRR4302537.3201439/1‑94 (MQ=60)

           TAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGC                                                                                     <  SRR4302537.5596826/94‑1 (MQ=60)

               TAGATCCGCCCGGTGACAAGGTGAAACCGTAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAAT                                                                                 <  SRR4302537.6261583/94‑1 (MQ=60)

               AAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAAT                                                                                 <  SRR4302537.826736/94‑1 (MQ=60)

                AGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATA                                                                                <  SRR4302537.4069047/94‑1 (MQ=60)

                AGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATCTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATA                                                                                <  SRR4302537.2624528/94‑1 (MQ=60)

                 GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATAC                                                                               <  SRR4302537.5277873/94‑1 (MQ=60)

                  ATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACT                                                                              >  SRR4302537.1231212/1‑94 (MQ=60)

                   TCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTG                                                                             <  SRR4302537.2411903/94‑1 (MQ=60)

                   TCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTG                                                                             <  SRR4302537.5892048/94‑1 (MQ=60)

                    CCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGC                                                                            >  SRR4302537.4685314/1‑94 (MQ=60)

                       CCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCA                                                                         <  SRR4302537.1366931/94‑1 (MQ=60)

                       CCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCA                                                                         >  SRR4302537.1204296/1‑94 (MQ=60)

                        CCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCAT                                                                        <  SRR4302537.2021272/94‑1 (MQ=60)

                        CCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCAT                                                                        <  SRR4302537.1410577/94‑1 (MQ=60)

                        CCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCAT                                                                        >  SRR4302537.4790422/1‑94 (MQ=60)

                         CGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCTCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATC                                                                       >  SRR4302537.1141865/1‑94 (MQ=60)

                          GGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCC                                                                      <  SRR4302537.6382537/94‑1 (MQ=60)

                           GTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCG                                                                     >  SRR4302537.293491/1‑94 (MQ=60)

                            TGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGC                                                                    >  SRR4302537.1890560/1‑94 (MQ=60)

                             GACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCT                                                                   >  SRR4302537.1107913/1‑94 (MQ=60)

                             GACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGAGTTCAGCGCCAATACTGCCCATCCGCT                                                                   >  SRR4302537.1666184/1‑94 (MQ=60)

                               CAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCA                                                                 <  SRR4302537.1844400/94‑1 (MQ=60)

                                AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAC                                                                >  SRR4302537.3364822/1‑94 (MQ=60)

                                AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAC                                                                >  SRR4302537.1088027/1‑94 (MQ=60)

                                 AGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACG                                                               <  SRR4302537.1642266/94‑1 (MQ=60)

                                 AGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACG                                                               >  SRR4302537.4211995/1‑94 (MQ=60)

                                   GTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCG                                                             >  SRR4302537.6485757/1‑94 (MQ=60)

                                   GTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCG                                                             >  SRR4302537.5447354/1‑94 (MQ=60)

                                   GTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCG                                                             <  SRR4302537.5549633/94‑1 (MQ=60)

                                   GTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCG                                                             <  SRR4302537.6070547/94‑1 (MQ=60)

                                     GAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGC                                                           >  SRR4302537.4818233/1‑94 (MQ=60)

                                       AACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGT                                                         >  SRR4302537.4697290/1‑94 (MQ=60)

                                        ACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTC                                                        >  SRR4302537.1093818/1‑94 (MQ=60)

                                          CTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAG                                                      >  SRR4302537.3874082/1‑94 (MQ=60)

                                            AAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCA                                                    >  SRR4302537.1039578/1‑94 (MQ=60)

                                             AATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAC                                                   <  SRR4302537.281238/94‑1 (MQ=60)

                                              ATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACG                                                  <  SRR4302537.4953138/94‑1 (MQ=60)

                                              ATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACG                                                  >  SRR4302537.1498982/1‑94 (MQ=60)

                                              ATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACG                                                  <  SRR4302537.4329430/94‑1 (MQ=60)

                                              ATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACG                                                  >  SRR4302537.6135265/1‑94 (MQ=60)

                                              ATCTAACATTTTCGGTGTCACAGATGCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACG                                                  <  SRR4302537.1431051/94‑1 (MQ=60)

                                               TCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGC                                                 >  SRR4302537.1680165/1‑94 (MQ=60)

                                                CTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT                                                >  SRR4302537.6405335/1‑94 (MQ=60)

                                                 TAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTC                                               >  SRR4302537.4935727/1‑94 (MQ=60)

                                                  AACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCG                                              >  SRR4302537.5338338/1‑94 (MQ=60)

                                                  AACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCG                                              >  SRR4302537.4077795/1‑94 (MQ=60)

                                                   ACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGC                                             <  SRR4302537.2354275/94‑1 (MQ=60)

                                                    CATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTTACGTGGCGTCAGCACGCTCGCA                                            >  SRR4302537.797380/1‑94 (MQ=60)

                                                    CATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCA                                            >  SRR4302537.5546874/1‑94 (MQ=60)

                                                     ATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAA                                           <  SRR4302537.3579257/94‑1 (MQ=60)

                                                      TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG                                          <  SRR4302537.5190092/94‑1 (MQ=60)

                                                      TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG                                          <  SRR4302537.5659815/94‑1 (MQ=60)

                                                       TTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGT                                         <  SRR4302537.4105301/94‑1 (MQ=60)

                                                       TTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGT                                         <  SRR4302537.5965946/94‑1 (MQ=60)

                                                         TCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACCCGGCGTCAGCACGCTCGCAAGTCG                                       >  SRR4302537.4338148/1‑94 (MQ=60)

                                                          CGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGT                                      <  SRR4302537.3609192/94‑1 (MQ=60)

                                                           GGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTG                                     <  SRR4302537.558083/94‑1 (MQ=60)

                                                           GGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTG                                     >  SRR4302537.1083283/1‑94 (MQ=60)

                                                             TGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGC                                   >  SRR4302537.1062092/1‑94 (MQ=60)

                                                             TGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGC                                   <  SRR4302537.401465/94‑1 (MQ=60)

                                                             TGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGC                                   <  SRR4302537.1643333/94‑1 (MQ=60)

                                                                CACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCC                                <  SRR4302537.296949/94‑1 (MQ=60)

                                                                CACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCC                                <  SRR4302537.737756/94‑1 (MQ=60)

                                                                 ACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCA                               >  SRR4302537.489747/1‑94 (MQ=60)

                                                                 ACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCA                               >  SRR4302537.4407102/1‑94 (MQ=60)

                                                                  CAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCAT                              >  SRR4302537.272435/1‑94 (MQ=60)

                                                                  CAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCAACCGCGCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCAT                              <  SRR4302537.4175354/94‑1 (MQ=60)

                                                                   AGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATC                             >  SRR4302537.5239440/1‑94 (MQ=60)

                                                                     ATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAC                           >  SRR4302537.4682420/1‑94 (MQ=60)

                                                                       TCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCT                         <  SRR4302537.5471924/94‑1 (MQ=60)

                                                                        CGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTG                        <  SRR4302537.3318421/94‑1 (MQ=60)

                                                                        CGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTG                        >  SRR4302537.4477288/1‑94 (MQ=60)

                                                                          CCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                      <  SRR4302537.6331061/94‑1 (MQ=60)

                                                                          CCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                      <  SRR4302537.5903805/94‑1 (MQ=60)

                                                                          CCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                      >  SRR4302537.1036051/1‑94 (MQ=60)

                                                                          CCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAC                      >  SRR4302537.3130222/1‑94 (MQ=60)

                                                                            ACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCA                    >  SRR4302537.2309744/1‑94 (MQ=60)

                                                                              GAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT                  <  SRR4302537.3871813/94‑1 (MQ=60)

                                                                               AATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATG                 >  SRR4302537.1025431/1‑94 (MQ=60)

                                                                               AATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATG                 <  SRR4302537.3378061/94‑1 (MQ=60)

                                                                                   CGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAT             <  SRR4302537.4376389/94‑1 (MQ=60)

                                                                                     CGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGA           <  SRR4302537.6136989/94‑1 (MQ=60)

                                                                                     CGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGA           <  SRR4302537.3056494/94‑1 (MQ=60)

                                                                                     CGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGA           <  SRR4302537.4909521/94‑1 (MQ=60)

                                                                                      GCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAC          <  SRR4302537.1690945/94‑1 (MQ=60)

                                                                                      GCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAC          <  SRR4302537.2092709/94‑1 (MQ=60)

                                                                                      GCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAC          <  SRR4302537.1329365/94‑1 (MQ=60)

                                                                                      GCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAC          >  SRR4302537.3011026/1‑94 (MQ=60)

                                                                                       CCAGCAGGCGTTCAGCTCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC         >  SRR4302537.4227813/1‑94 (MQ=60)

                                                                                       CCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC         >  SRR4302537.1506709/1‑94 (MQ=60)

                                                                                       CCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC         >  SRR4302537.3914150/1‑94 (MQ=60)

                                                                                       CCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC         <  SRR4302537.4193202/94‑1 (MQ=60)

                                                                                       CCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC         <  SRR4302537.5202791/94‑1 (MQ=60)

                                                                                       CCAGCAGGCGTTCAGCGAAAATCCTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGCCCAATGTCATGACC         <  SRR4302537.2369257/94‑1 (MQ=60)

                                                                                         AGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGT       >  SRR4302537.3545741/1‑94 (MQ=60)

                                                                                         AGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGT       <  SRR4302537.2885081/94‑1 (MQ=60)

                                                                                          GCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTG      <  SRR4302537.95597/94‑1 (MQ=60)

                                                                                           cagGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGG     <  SRR4302537.5276552/91‑1 (MQ=60)

                                                                                            agGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGA    >  SRR4302537.1808076/3‑94 (MQ=60)

                                                                                            agGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGA    >  SRR4302537.5924743/3‑94 (MQ=60)

                                                                                            G‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAA   >  SRR4302537.4495233/1‑94 (MQ=60)

                                                                                            G‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGCGGCTCCATCACCTGCCCCATGTCCTGACCGTGGAA   >  SRR4302537.2116192/1‑94 (MQ=60)

                                                                                              GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAGGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAAA  >  SRR4302537.4631029/1‑94 (MQ=60)

ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAAA  >  NC_000913/3575353‑3575539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`