Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,602,257	A→G	A78A (GCA→GCG)	yhhF →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,602,257	0	A	G	100.0%	845.9 / NA	244	A78A (GCA→GCG)	yhhF	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (106/138); total (106/138)

Only 100 of 259 total aligned reads displayed.

TCCGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCAACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAACAG  >  NC_000913/3602167‑3602346

 ccGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACg                                                                                        >  1:1345997/1‑93 (MQ=255)

   ggTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGtt                                                                                      <  2:1716032/93‑1 (MQ=255)

     tCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGGGACGttgt                                                                                    >  2:2289802/1‑92 (MQ=255)

      cATTGTTGACGCCCAATTTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGttgat                                                                                   <  1:4981818/93‑1 (MQ=255)

      cATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGttgat                                                                                   <  2:5710133/93‑1 (MQ=255)

       aTTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGttgatt                                                                                  <  2:19476/93‑1 (MQ=255)

       aTTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGttgatt                                                                                  <  2:4436290/93‑1 (MQ=255)

       aTTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCACGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGttgatt                                                                                  >  1:4548801/1‑93 (MQ=255)

        ttgttgACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGttgattg                                                                                 >  1:4005304/1‑93 (MQ=255)

        ttgttgACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGttgattg                                                                                 >  1:4585251/1‑93 (MQ=255)

         tgttgACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGttgattga                                                                                <  2:2669040/93‑1 (MQ=255)

         tgttgACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGgtgattga                                                                                >  1:1746468/1‑93 (MQ=255)

           ttgACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTgaga                                                                              >  2:668968/1‑93 (MQ=255)

           ttgACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTgaga                                                                              <  1:5270265/93‑1 (MQ=255)

            tgACGCTCAATGTCTGGATTGCTTCGCCGGGAGAGGCGCGCTGGGTCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGAt                                                                             <  2:2619481/93‑1 (MQ=255)

            tgACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGAt                                                                             <  1:6045081/93‑1 (MQ=255)

            tgACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGAt                                                                             <  1:1249020/93‑1 (MQ=255)

             gACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATg                                                                            <  2:3848374/93‑1 (MQ=255)

             gACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATg                                                                            >  1:6399409/1‑93 (MQ=255)

             gACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATg                                                                            >  1:1011945/1‑93 (MQ=255)

                gCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGTCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGAt                                                                         <  2:5131101/93‑1 (MQ=255)

                gCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGAt                                                                         >  1:5573724/1‑93 (MQ=255)

                gCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGAt                                                                         <  2:4188890/93‑1 (MQ=255)

                gCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGAt                                                                         <  1:4755727/93‑1 (MQ=255)

                 cccAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATc                                                                        >  1:3154020/1‑93 (MQ=255)

                 cccAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATc                                                                        <  2:5829519/93‑1 (MQ=255)

                  ccAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATcg                                                                       >  2:2976529/1‑93 (MQ=255)

                     aTGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATcgcgg                                                                    >  1:5219843/1‑92 (MQ=255)

                     aTGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATcgcgc                                                                    <  1:2849692/93‑1 (MQ=255)

                     aTGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATcgcgc                                                                    >  2:1081851/1‑93 (MQ=255)

                      tGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATcgttcg                                                                   >  2:3544037/1‑89 (MQ=255)

                        tCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGt                                                                 >  1:2054354/1‑93 (MQ=255)

                         cTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGtt                                                                <  1:5089300/93‑1 (MQ=255)

                          tGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGttt                                                               <  2:2228166/93‑1 (MQ=255)

                           ggATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTTAGATGGATCGCGCGGTTtc                                                              <  1:4144034/93‑1 (MQ=255)

                            gATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTtct                                                             >  1:1629356/1‑93 (MQ=255)

                             gttGCTTCACCGGGAGCGGCGCGCTGGGGCTTGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGGGCGGTTtctc                                                            >  2:5176602/2‑93 (MQ=255)

                             atggCTTCGCCGGGAGCGCCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTtctc                                                            <  2:3389804/90‑1 (MQ=255)

                             aTTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTtctc                                                            <  2:3176037/93‑1 (MQ=255)

                             aTTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTtctc                                                            <  1:2347484/93‑1 (MQ=255)

                             aTTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTtctc                                                            <  2:2536880/93‑1 (MQ=255)

                              ttGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTca                                                           >  1:5429941/1‑93 (MQ=255)

                               tGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTcag                                                          <  1:86484/93‑1 (MQ=255)

                                gCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTcagg                                                         >  1:2751024/1‑92 (MQ=255)

                                gCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTcagc                                                         >  2:4895412/1‑93 (MQ=255)

                                 cTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTcagca                                                        <  2:5213425/93‑1 (MQ=255)

                                   tCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGt                                                      >  1:1563479/1‑93 (MQ=255)

                                   tCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGt                                                      <  2:4716864/93‑1 (MQ=255)

                                   tCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGt                                                      >  2:1071805/1‑93 (MQ=255)

                                     gCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGtta                                                    <  1:5283408/93‑1 (MQ=255)

                                       cGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGGTTCTCAGCAGttaat                                                  >  1:2261950/1‑93 (MQ=255)

                                        gggAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGttaatt                                                 >  2:6239022/1‑93 (MQ=255)

                                        gggAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGttaatt                                                 >  2:17611/1‑93 (MQ=255)

                                         ggAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGttaatta                                                >  1:5335171/1‑93 (MQ=255)

                                          gAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGttaattaa                                               <  1:733762/93‑1 (MQ=255)

                                           aGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAg                                              <  2:4671728/93‑1 (MQ=255)

                                             cggcgCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGaa                                            <  2:1509186/93‑1 (MQ=255)

                                             cggcgCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGaa                                            <  1:4303064/93‑1 (MQ=255)

                                               gcgcgcTGGGTCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATc                                          <  1:2378181/93‑1 (MQ=255)

                                               gcgcgcTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATc                                          >  1:2574935/1‑93 (MQ=255)

                                               gcgcgcTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATc                                          >  1:377415/1‑93 (MQ=255)

                                               gcgcgcTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATc                                          <  2:572484/93‑1 (MQ=255)

                                               gcgcgcTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATc                                          <  1:1452390/93‑1 (MQ=255)

                                                 gcgcTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTg                                        <  1:910102/93‑1 (MQ=255)

                                                  cgcTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTgg                                       <  1:2923004/93‑1 (MQ=255)

                                                   gcTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTggg                                      >  1:1128406/1‑92 (MQ=255)

                                                      ggggCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGac                                   >  2:415490/1‑93 (MQ=255)

                                                       gggCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGaca                                  >  2:919001/1‑93 (MQ=255)

                                                        ggCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGGTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGacac                                 >  2:5457840/1‑93 (MQ=255)

                                                           tGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTaa                              >  2:2866386/1‑93 (MQ=255)

                                                            ggAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTaaa                             >  2:2405132/1‑93 (MQ=255)

                                                            ggAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTaaa                             <  2:6143502/93‑1 (MQ=255)

                                                            ggAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTaaa                             >  1:4824346/1‑93 (MQ=255)

                                                             gAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTaaaa                            >  1:1876408/1‑93 (MQ=255)

                                                             gAAGCGTTATCGCGCTACGCTGCGGGGGCGACGGTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTaaaa                            >  2:3354736/1‑93 (MQ=255)

                                                               aGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAAGCTGGCGACACTAAAAGc                          <  2:6169462/93‑1 (MQ=255)

                                                                gCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCa                         <  1:2670424/93‑1 (MQ=255)

                                                                 cGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTNANTAAGAATCTGGCGACNCNAAAAGNAg                        >  2:4324208/1‑93 (MQ=255)

                                                                  gTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAgg                       >  2:5104368/1‑93 (MQ=255)

                                                                   ttATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGc                      >  1:511349/1‑93 (MQ=255)

                                                                   ttATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGc                      >  1:2187259/1‑93 (MQ=255)

                                                                      tCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAAt                   >  2:1209686/1‑93 (MQ=255)

                                                                        gcgcTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGc                 >  2:1364320/1‑93 (MQ=255)

                                                                         cgcTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCa                <  2:857443/93‑1 (MQ=255)

                                                                         cgcTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCa                <  1:4457022/93‑1 (MQ=255)

                                                                         cgcTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCa                <  1:5382398/93‑1 (MQ=255)

                                                                            tACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCAcgc             <  2:454973/93‑1 (MQ=255)

                                                                            tACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCAcgc             >  1:5635529/1‑93 (MQ=255)

                                                                            tACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCAcgc             >  2:5632087/1‑93 (MQ=255)

                                                                            tACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCAcgc             >  1:4056432/1‑93 (MQ=255)

                                                                             aCGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCAcgcg            <  2:4413790/93‑1 (MQ=255)

                                                                              cGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCgt           >  1:1536373/1‑93 (MQ=255)

                                                                               gCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCgtg          <  1:1136333/93‑1 (MQ=255)

                                                                                cTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCgtgg         >  1:3061483/1‑93 (MQ=255)

                                                                                cTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCgtgg         <  2:3620579/93‑1 (MQ=255)

                                                                                 tGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCgtggt        <  1:3408453/93‑1 (MQ=255)

                                                                                  gCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCgtggtg       <  1:6212770/93‑1 (MQ=255)

                                                                                    gggggCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGaa     >  1:5940405/1‑93 (MQ=255)

                                                                                       ggCGACGTTGATTGAGATGGATCGCGCGTTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAACAg  <  2:4591114/93‑1 (MQ=255)

                                                                                       ggCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAACAg  <  1:4410984/93‑1 (MQ=255)

TCCGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCAACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAACAG  >  NC_000913/3602167‑3602346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCTCCGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCAACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAACAGCAAC  >  NC_000913/3602164‑3602350

GGCTCCGGTCATTGTTGACGCCAAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCG                                                                                               >  SRR4302537.1233867/1‑94 (MQ=60)

  CTCCGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGAC                                                                                             >  SRR4302537.51981/1‑94 (MQ=60)

   TCCGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACG                                                                                            >  SRR4302537.1355378/1‑94 (MQ=60)

    CCGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGT                                                                                           >  SRR4302537.2365163/1‑94 (MQ=60)

    CCGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGT                                                                                           <  SRR4302537.4217324/94‑1 (MQ=60)

    CCGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGT                                                                                           >  SRR4302537.3232510/1‑94 (MQ=60)

     CGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTT                                                                                          >  SRR4302537.2545581/1‑94 (MQ=60)

       GTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGA                                                                                        <  SRR4302537.4431657/94‑1 (MQ=60)

        TCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGAT                                                                                       >  SRR4302537.5299468/1‑94 (MQ=60)

        TCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGAT                                                                                       <  SRR4302537.5660789/94‑1 (MQ=60)

         CATTGTTGACGCCCAATTTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATT                                                                                      <  SRR4302537.5016153/94‑1 (MQ=60)

         CATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATT                                                                                      <  SRR4302537.771212/94‑1 (MQ=60)

         CATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCACGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATT                                                                                      >  SRR4302537.4580282/1‑94 (MQ=60)

          ATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTG                                                                                     >  SRR4302537.4033337/1‑94 (MQ=60)

          ATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTG                                                                                     <  SRR4302537.292096/94‑1 (MQ=60)

          ATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTG                                                                                     >  SRR4302537.4616966/1‑94 (MQ=60)

          ATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTG                                                                                     <  SRR4302537.6404138/94‑1 (MQ=60)

           TTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGGTGATTGA                                                                                    >  SRR4302537.1758648/1‑94 (MQ=60)

            TGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAG                                                                                   >  SRR4302537.1320981/1‑94 (MQ=60)

              TTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGAT                                                                                 <  SRR4302537.6458717/94‑1 (MQ=60)

              TTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGAT                                                                                 <  SRR4302537.2703483/94‑1 (MQ=60)

              TTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGAT                                                                                 <  SRR4302537.5306537/94‑1 (MQ=60)

              TTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGACTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGAT                                                                                 <  SRR4302537.5383651/94‑1 (MQ=60)

               TGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATG                                                                                >  SRR4302537.6442978/1‑94 (MQ=60)

               TGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATG                                                                                <  SRR4302537.6086598/94‑1 (MQ=60)

               TGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATG                                                                                <  SRR4302537.1257719/94‑1 (MQ=60)

               TGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATG                                                                                <  SRR4302537.1139360/94‑1 (MQ=60)

               TGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATG                                                                                >  SRR4302537.1018920/1‑94 (MQ=60)

                GACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGG                                                                               <  SRR4302537.532070/94‑1 (MQ=60)

                GACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGAGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGG                                                                               >  SRR4302537.4578398/1‑94 (MQ=60)

                 ACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAATCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGA                                                                              <  SRR4302537.4592279/94‑1 (MQ=60)

                 ACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGA                                                                              <  SRR4302537.5108710/94‑1 (MQ=60)

                  CGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGAT                                                                             >  SRR4302537.3336426/1‑94 (MQ=60)

                  CGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGAT                                                                             >  SRR4302537.4439545/1‑94 (MQ=60)

                  CGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGAT                                                                             <  SRR4302537.5961165/94‑1 (MQ=60)

                  CGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGAT                                                                             >  SRR4302537.2024983/1‑94 (MQ=60)

                  CGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGAT                                                                             >  SRR4302537.5611822/1‑94 (MQ=60)

                   GCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATC                                                                            >  SRR4302537.3176167/1‑94 (MQ=60)

                   GCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATC                                                                            <  SRR4302537.4788582/94‑1 (MQ=60)

                   GCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATC                                                                            <  SRR4302537.2285732/94‑1 (MQ=60)

                    CCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCG                                                                           >  SRR4302537.1961263/1‑94 (MQ=60)

                    CCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCG                                                                           >  SRR4302537.5318730/1‑94 (MQ=60)

                     CCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGC                                                                          >  SRR4302537.146685/1‑94 (MQ=60)

                       AATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGG                                                                        >  SRR4302537.5255741/1‑94 (MQ=60)

                       AATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGC                                                                        <  SRR4302537.1456130/94‑1 (MQ=60)

                        ATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCG                                                                       >  SRR4302537.4052641/1‑94 (MQ=60)

                        ATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCG                                                                       <  SRR4302537.2869646/94‑1 (MQ=60)

                        ATGTCTGGATTGCGTCGCCGGGAGCGGCGCGCTGGGTCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCG                                                                       <  SRR4302537.2791328/94‑1 (MQ=60)

                         TGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGG                                                                      <  SRR4302537.6204071/94‑1 (MQ=60)

                          GTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGT                                                                     >  SRR4302537.2068766/1‑94 (MQ=60)

                            CTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTT                                                                   <  SRR4302537.150340/94‑1 (MQ=60)

                            CTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTT                                                                   <  SRR4302537.5124338/94‑1 (MQ=60)

                            CTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTT                                                                   <  SRR4302537.4944437/94‑1 (MQ=60)

                             TGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTC                                                                  >  SRR4302537.4766356/1‑94 (MQ=60)

                              GGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTTAGATGGATCGCGCGGTTTCT                                                                 <  SRR4302537.4172943/94‑1 (MQ=60)

                              GGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCT                                                                 <  SRR4302537.6458989/94‑1 (MQ=60)

                              GGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCT                                                                 >  SRR4302537.2801015/1‑94 (MQ=60)

                              GGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCT                                                                 >  SRR4302537.1640758/1‑94 (MQ=60)

                               GATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTC                                                                >  SRR4302537.155912/1‑94 (MQ=60)

                               GATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTC                                                                >  SRR4302537.1310084/1‑94 (MQ=60)

                                ATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCA                                                               <  SRR4302537.2364010/94‑1 (MQ=60)

                                ATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCA                                                               <  SRR4302537.5642164/94‑1 (MQ=60)

                                ATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCA                                                               >  SRR4302537.5466969/1‑94 (MQ=60)

                                ATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTCATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCA                                                               >  SRR4302537.2445927/1‑94 (MQ=60)

                                ATTGCTTCGCCGAGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGGTACTCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCA                                                               <  SRR4302537.1559170/94‑1 (MQ=60)

                                 ttgtatcgtcgaGAGCGGCGCGCTGGGGCTGGAATCGTTATCGCGCTTCGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAG                                                              <  SRR4302537.157510/82‑1 (MQ=60)

                                 TTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAG                                                              <  SRR4302537.160534/94‑1 (MQ=60)

                                  TGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGG                                                             >  SRR4302537.2770219/1‑94 (MQ=60)

                                  TGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGC                                                             <  SRR4302537.87111/94‑1 (MQ=60)

                                  TGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGC                                                             <  SRR4302537.300574/94‑1 (MQ=60)

                                    CTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAG                                                           >  SRR4302537.3121786/1‑94 (MQ=60)

                                     TTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGT                                                          >  SRR4302537.1574388/1‑94 (MQ=60)

                                     TTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGT                                                          >  SRR4302537.2681081/1‑94 (MQ=60)

                                      TCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTT                                                         <  SRR4302537.2976291/94‑1 (MQ=60)

                                       CGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTA                                                        <  SRR4302537.3597381/94‑1 (MQ=60)

                                        GCCGGGAGCGGCGCGCTGGGGCTGGCAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAA                                                       >  SRR4302537.4208955/1‑94 (MQ=60)

                                        GCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAA                                                       <  SRR4302537.5319744/94‑1 (MQ=60)

                                         CCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAAT                                                      >  SRR4302537.5337086/1‑94 (MQ=60)

                                         CCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGGTTCTCAGCAGTTAAT                                                      >  SRR4302537.2277911/1‑94 (MQ=60)

                                          CGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATT                                                     <  SRR4302537.5170834/94‑1 (MQ=60)

                                           GGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTA                                                    >  SRR4302537.5371752/1‑94 (MQ=60)

                                           GGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTA                                                    <  SRR4302537.4673492/94‑1 (MQ=60)

                                             GAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAG                                                  <  SRR4302537.738768/94‑1 (MQ=60)

                                                CGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAAT                                               <  SRR4302537.4332966/94‑1 (MQ=60)

                                                 GGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATC                                              >  SRR4302537.380032/1‑94 (MQ=60)

                                                 GGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATC                                              <  SRR4302537.5052199/94‑1 (MQ=60)

                                                 GGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATC                                              >  SRR4302537.2592961/1‑94 (MQ=60)

                                                  GCGCGCTGGTGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCT                                             <  SRR4302537.2206927/94‑1 (MQ=60)

                                                  GCGCGCTGGGTCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCT                                             <  SRR4302537.2394938/94‑1 (MQ=60)

                                                  GCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCT                                             <  SRR4302537.1462510/94‑1 (MQ=60)

                                                   CGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTG                                            >  SRR4302537.4147074/1‑94 (MQ=60)

                                                    GCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGG                                           <  SRR4302537.916384/94‑1 (MQ=60)

                                                    GCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGGTTCTCAGCAGTTAATTAAGAATCTGG                                           >  SRR4302537.406012/1‑94 (MQ=60)

                                                     CGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGG                                          >  SRR4302537.1136237/1‑94 (MQ=60)

                                                     CGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGC                                          <  SRR4302537.2943539/94‑1 (MQ=60)

                                                     CGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGC                                          >  SRR4302537.4325152/1‑94 (MQ=60)

                                                       CTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGA                                        >  SRR4302537.3658341/1‑94 (MQ=60)

                                                       CTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGACGGACCGCGGGGTCTCTCAGCAGTTAATTAAGAATCTGGCGA                                        >  SRR4302537.3598996/1‑94 (MQ=60)

                                                        TGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGAC                                       >  SRR4302537.5444725/1‑94 (MQ=60)

                                                         GGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACA                                      <  SRR4302537.102073/94‑1 (MQ=60)

                                                         GGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACA                                      >  SRR4302537.1683166/1‑94 (MQ=60)

                                                          GGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACAC                                     <  SRR4302537.4788590/94‑1 (MQ=60)

                                                           GGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGGGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACT                                    <  SRR4302537.4487514/94‑1 (MQ=60)

                                                             CTGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAA                                  >  SRR4302537.229745/1‑94 (MQ=60)

                                                              TGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAA                                 >  SRR4302537.1819386/1‑94 (MQ=60)

                                                              TGGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAA                                 >  SRR4302537.4857669/1‑94 (MQ=60)

                                                               GGAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAA                                >  SRR4302537.1889461/1‑94 (MQ=60)

                                                                GAAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAG                               <  SRR4302537.3851917/94‑1 (MQ=60)

                                                                 AAGCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGC                              <  SRR4302537.5455878/94‑1 (MQ=60)

                                                                   GCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAG                            <  SRR4302537.2689080/94‑1 (MQ=60)

                                                                   GCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAG                            <  SRR4302537.2605867/94‑1 (MQ=60)

                                                                   GCGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAG                            <  SRR4302537.2134413/94‑1 (MQ=60)

                                                                    CGTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGG                           >  SRR4302537.484736/1‑94 (MQ=60)

                                                                     GTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGC                          >  SRR4302537.4546290/1‑94 (MQ=60)

                                                                     GTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGC                          >  SRR4302537.2202668/1‑94 (MQ=60)

                                                                     GTTATCGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGC                          >  SRR4302537.514856/1‑94 (MQ=60)

                                                                          CGCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGGTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAAGCAATGC                     >  SRR4302537.1642487/1‑94 (MQ=60)

                                                                           GCGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCA                    <  SRR4302537.878935/94‑1 (MQ=60)

                                                                            CGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCAC                   <  SRR4302537.5419203/94‑1 (MQ=60)

                                                                            CGCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCAC                   <  SRR4302537.4487804/94‑1 (MQ=60)

                                                                             GCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACG                  >  SRR4302537.549071/1‑94 (MQ=60)

                                                                             GCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACG                  <  SRR4302537.783646/94‑1 (MQ=60)

                                                                             GCTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACG                  >  SRR4302537.5720221/1‑94 (MQ=60)

                                                                              CTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGC                 >  SRR4302537.4084778/1‑94 (MQ=60)

                                                                              CTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGC                 >  SRR4302537.5674095/1‑94 (MQ=60)

                                                                              CTACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGC                 >  SRR4302537.5134581/1‑94 (MQ=60)

                                                                                ACGCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGT               >  SRR4302537.1547104/1‑94 (MQ=60)

                                                                                  GCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGG             >  SRR4302537.3082816/1‑94 (MQ=60)

                                                                                  GCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGG             <  SRR4302537.1143340/94‑1 (MQ=60)

                                                                                  GCTGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGG             <  SRR4302537.1144228/94‑1 (MQ=60)

                                                                                    TGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTG           <  SRR4302537.3432602/94‑1 (MQ=60)

                                                                                    TGCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTG           <  SRR4302537.6230354/94‑1 (MQ=60)

                                                                                     GCGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGA          <  SRR4302537.6255564/94‑1 (MQ=60)

                                                                                      CGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAA         <  SRR4302537.6061753/94‑1 (MQ=60)

                                                                                      CGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAA         >  SRR4302537.5981178/1‑94 (MQ=60)

                                                                                      CGGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAA         >  SRR4302537.2073211/1‑94 (MQ=60)

                                                                                       GGGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAAC        >  SRR4302537.1171113/1‑94 (MQ=60)

                                                                                        GGGGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAACA       >  SRR4302537.5258065/1‑94 (MQ=60)

                                                                                          GGCGACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAACAGC     <  SRR4302537.4441420/94‑1 (MQ=60)

                                                                                             GACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAACAGCAAC  >  SRR4302537.1065220/1‑94 (MQ=60)

                                                                                             GACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAACAGCAAC  >  SRR4302537.2150385/1‑94 (MQ=60)

GGCTCCGGTCATTGTTGACGCCCAATGTCTGGATTGCTTCGCCGGGAGCGGCGCGCTGGGGCTGGAAGCGTTATCGCGCTACGCTGCGGGGGCAACGTTGATTGAGATGGATCGCGCGGTTTCTCAGCAGTTAATTAAGAATCTGGCGACACTAAAAGCAGGCAATGCACGCGTGGTGAACAGCAAC  >  NC_000913/3602164‑3602350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`