Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,652,629	A→G	Y106C (TAC→TGC)	yhiF →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,652,629	0	A	G	100.0%	955.3 / NA	270	Y106C (TAC→TGC)	yhiF	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (141/129); total (141/129)

Only 100 of 278 total aligned reads displayed.

ATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTACTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATA  >  NC_000913/3652539‑3652718

atatTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCt                                                                                         <  1:3194661/93‑1 (MQ=255)

 tatTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTg                                                                                        >  2:737760/1‑93 (MQ=255)

  atTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTtgctgc                                                                                       >  2:3816167/1‑93 (MQ=255)

  atTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTtgctgc                                                                                       <  2:4367368/93‑1 (MQ=255)

   ttAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTgctgct                                                                                      >  2:4000731/1‑93 (MQ=255)

        cGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCtgtg                                                                                 <  2:5667978/93‑1 (MQ=255)

         gCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGc                                                                                >  2:3303602/1‑93 (MQ=255)

         gCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGc                                                                                >  1:6320157/1‑93 (MQ=255)

          cTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGcc                                                                               <  1:382807/93‑1 (MQ=255)

           tGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCt                                                                              >  2:1037458/1‑93 (MQ=255)

           tGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCt                                                                              >  1:696768/1‑93 (MQ=255)

            gCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTg                                                                             >  1:4478657/1‑93 (MQ=255)

            gCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTg                                                                             >  2:6073116/1‑93 (MQ=255)

              cTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGaa                                                                           <  1:4931059/93‑1 (MQ=255)

              cTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGaa                                                                           <  1:5320860/93‑1 (MQ=255)

               tGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAg                                                                          >  2:503823/1‑93 (MQ=255)

                ggggAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGc                                                                         >  1:3926768/1‑93 (MQ=255)

                   gAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGc                                                                      <  2:2097754/93‑1 (MQ=255)

                    aaaGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCt                                                                     <  1:2171784/93‑1 (MQ=255)

                      aGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTTGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCtgt                                                                   <  1:2999507/93‑1 (MQ=255)

                          ccGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCa                                                               >  2:4279562/1‑93 (MQ=255)

                           cGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCAc                                                              >  2:2239437/1‑93 (MQ=255)

                           cGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCAc                                                              >  2:3195940/1‑93 (MQ=255)

                           cGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCAc                                                              >  2:610266/1‑93 (MQ=255)

                             gTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACtt                                                            >  1:1935859/1‑93 (MQ=255)

                             gTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACtt                                                            >  2:1997281/1‑93 (MQ=255)

                               gACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTc                                                          <  1:918775/93‑1 (MQ=255)

                               gACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTc                                                          <  2:2947656/93‑1 (MQ=255)

                               gACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTc                                                          <  1:4176849/93‑1 (MQ=255)

                                aCCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTcg                                                         >  1:4758951/1‑93 (MQ=255)

                                aCCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTcg                                                         >  1:5678327/1‑93 (MQ=255)

                                 ccTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTcgc                                                        <  1:2471392/93‑1 (MQ=255)

                                   tttGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCgcgc                                                      >  2:4753222/1‑93 (MQ=255)

                                   tttGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCgcgc                                                      <  1:5273911/93‑1 (MQ=255)

                                      gTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCgcaag                                                   <  2:1585728/93‑1 (MQ=255)

                                       ttCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCgcaagc                                                  >  2:899340/1‑93 (MQ=255)

                                       taccGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCgcaagc                                                  <  2:544677/91‑1 (MQ=255)

                                        tCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCgcaagca                                                 >  1:200033/1‑93 (MQ=255)

                                          cgcgGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAAc                                               <  2:5640096/93‑1 (MQ=255)

                                            cgGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACAt                                             >  2:3723297/1‑93 (MQ=255)

                                             ggACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATc                                            <  1:5066340/93‑1 (MQ=255)

                                             ggACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATc                                            <  2:260912/93‑1 (MQ=255)

                                              gACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCa                                           <  2:2812141/93‑1 (MQ=255)

                                              gACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCa                                           <  2:3108369/93‑1 (MQ=255)

                                              gACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCa                                           >  1:249654/1‑93 (MQ=255)

                                               actatcactatcATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAg                                          <  2:2702895/93‑1 (MQ=255)

                                               actatcactatcATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAg                                          >  2:3367911/1‑93 (MQ=255)

                                                ctatcactatcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAgg                                         <  2:3902897/93‑1 (MQ=255)

                                                ctatcactatcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAgg                                         <  1:776396/93‑1 (MQ=255)

                                                ctatcactatcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAgg                                         <  1:6188779/93‑1 (MQ=255)

                                                 tatcactatcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGt                                        >  2:3179850/1‑93 (MQ=255)

                                                  atcactatcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGtt                                       <  2:4855519/93‑1 (MQ=255)

                                                   tcactatcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTc                                      >  2:3461843/1‑93 (MQ=255)

                                                   tcactatcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTc                                      <  1:3687240/93‑1 (MQ=255)

                                                    cactatcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCt                                     >  2:186463/1‑93 (MQ=255)

                                                     actatcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTg                                    >  1:1005601/1‑93 (MQ=255)

                                                       tatcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAg                                  >  1:5484825/1‑93 (MQ=255)

                                                        atcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGc                                 >  2:3868887/1‑93 (MQ=255)

                                                        atcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGc                                 >  2:3392708/1‑93 (MQ=255)

                                                        atcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGc                                 >  2:3606652/1‑93 (MQ=255)

                                                         tcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCt                                <  2:1715903/93‑1 (MQ=255)

                                                         tcaTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCt                                <  1:6370488/93‑1 (MQ=255)

                                                           atcgATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGc                              >  2:5245732/4‑93 (MQ=255)

                                                           aTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTga                              <  1:1167906/93‑2 (MQ=255)

                                                           aTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGc                              >  2:1208468/1‑93 (MQ=255)

                                                           aTTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGc                              >  1:3228311/1‑93 (MQ=255)

                                                             tGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCAt                            <  1:945775/93‑1 (MQ=255)

                                                              gATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCAtt                           >  2:4709581/1‑93 (MQ=255)

                                                              gATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCAtt                           >  1:1954378/1‑93 (MQ=255)

                                                               aTTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGGAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAAGGTCTGAGCTGCATTg                          >  1:5494702/1‑93 (MQ=255)

                                                               aTTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTg                          <  1:2044084/93‑1 (MQ=255)

                                                                ttttGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGc                         >  2:63031/1‑93 (MQ=255)

                                                                ttttGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGc                         <  2:5203080/93‑1 (MQ=255)

                                                                  ttGTCGCACTCATCAATTGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGa                       <  1:1590833/93‑1 (MQ=255)

                                                                   tGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGaa                      <  2:1396688/93‑1 (MQ=255)

                                                                   tGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGaa                      <  1:4386568/93‑1 (MQ=255)

                                                                      cGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCa                   <  1:3809195/93‑1 (MQ=255)

                                                                       gCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCaa                  >  1:4692777/1‑93 (MQ=255)

                                                                       gCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCaa                  >  2:2683281/1‑93 (MQ=255)

                                                                         aCTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAAt                >  1:5722385/1‑93 (MQ=255)

                                                                         aCTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAAt                <  1:4287998/93‑1 (MQ=255)

                                                                          cTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATg               >  2:4451588/1‑93 (MQ=255)

                                                                          cTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATg               >  1:2405834/1‑93 (MQ=255)

                                                                           tcatcaATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCCCTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCCTTGCGAATCAAATGa              >  1:878682/1‑93 (MQ=255)

                                                                           tcatcaATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGa              >  1:1453534/1‑93 (MQ=255)

                                                                           tcatcaATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGCGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGa              >  2:2027743/1‑93 (MQ=255)

                                                                            catcaATGGCAGTTGCTGCTCTGGGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGAc             <  1:4331091/93‑1 (MQ=255)

                                                                             atcaATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACa            >  1:3367108/1‑93 (MQ=255)

                                                                             atcaATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACa            >  1:4349329/1‑93 (MQ=255)

                                                                              tcaATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACaa           <  1:1783572/93‑1 (MQ=255)

                                                                              tcaATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACaa           >  2:5939963/1‑93 (MQ=255)

                                                                               caATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAAc          <  1:1880091/93‑1 (MQ=255)

                                                                               caATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAAc          <  2:1588675/93‑1 (MQ=255)

                                                                                aaTGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACg         <  1:5970760/93‑1 (MQ=255)

                                                                                 aTGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACgg        <  2:45489/93‑1 (MQ=255)

                                                                                   ggtaGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGaa      <  1:1062649/90‑1 (MQ=255)

                                                                                     cAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGa    <  2:415121/93‑1 (MQ=255)

                                                                                     cAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGa    >  1:5122369/1‑93 (MQ=255)

                                                                                       gTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGata  <  1:2297640/93‑1 (MQ=255)

                                                                                       gTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGata  <  1:1354099/93‑1 (MQ=255)

ATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTACTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATA  >  NC_000913/3652539‑3652718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TAATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTACTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATTCT  >  NC_000913/3652537‑3652722

TAATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGC                                                                                              >  SRR4302537.4209464/1‑94 (MQ=60)

TAATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGC                                                                                              >  SRR4302537.1812905/1‑94 (MQ=60)

TAATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGC                                                                                              >  SRR4302537.5960933/1‑94 (MQ=60)

 AATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCT                                                                                             <  SRR4302537.3122792/94‑1 (MQ=60)

 AATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCT                                                                                             >  SRR4302537.6134388/1‑94 (MQ=60)

 AATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCT                                                                                             <  SRR4302537.5072623/94‑1 (MQ=60)

 AATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCT                                                                                             <  SRR4302537.5240745/94‑1 (MQ=60)

  ATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTG                                                                                            <  SRR4302537.3217124/94‑1 (MQ=60)

   TATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGC                                                                                           <  SRR4302537.4865713/94‑1 (MQ=60)

   TATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATAGCAGTTGCTGC                                                                                           >  SRR4302537.375640/1‑94 (MQ=60)

      TAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCT                                                                                        <  SRR4302537.5743492/94‑1 (MQ=60)

      TAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCT                                                                                        >  SRR4302537.5497338/1‑94 (MQ=60)

       AAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTG                                                                                       >  SRR4302537.384730/1‑94 (MQ=60)

        AACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGT                                                                                      >  SRR4302537.6303882/1‑94 (MQ=60)

          CGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGC                                                                                    >  SRR4302537.6363400/1‑94 (MQ=60)

            CTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCT                                                                                  >  SRR4302537.701542/1‑94 (MQ=60)

            CTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCT                                                                                  <  SRR4302537.385457/94‑1 (MQ=60)

            CTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCT                                                                                  <  SRR4302537.2321794/94‑1 (MQ=60)

            CTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCT                                                                                  >  SRR4302537.888926/1‑94 (MQ=60)

            CTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCT                                                                                  <  SRR4302537.120087/94‑1 (MQ=60)

             TGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTG                                                                                 <  SRR4302537.3226583/94‑1 (MQ=60)

             TGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTG                                                                                 >  SRR4302537.4509638/1‑94 (MQ=60)

             TGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTG                                                                                 <  SRR4302537.4061032/94‑1 (MQ=60)

             TGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTG                                                                                 >  SRR4302537.909609/1‑94 (MQ=60)

               CCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAA                                                                               >  SRR4302537.5477643/1‑94 (MQ=60)

                CTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAG                                                                              <  SRR4302537.5357383/94‑1 (MQ=60)

                CTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAG                                                                              <  SRR4302537.4965048/94‑1 (MQ=60)

                 TGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGC                                                                             >  SRR4302537.1440568/1‑94 (MQ=60)

                 TGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGC                                                                             >  SRR4302537.3954204/1‑94 (MQ=60)

                  GGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCG                                                                            >  SRR4302537.2097321/1‑94 (MQ=60)

                  GGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCG                                                                            <  SRR4302537.418882/94‑1 (MQ=60)

                  GGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCG                                                                            <  SRR4302537.1928335/94‑1 (MQ=60)

                  GGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCG                                                                            <  SRR4302537.5576831/94‑1 (MQ=60)

                   gatttgttgttttttttctttctctgatattatttatttgattttttTTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGG                                                                           <  SRR4302537.6410945/47‑1 (MQ=60)

                     GAAAGTGCCGGTGACCTGTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCT                                                                         <  SRR4302537.1354684/94‑1 (MQ=60)

                      AAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTG                                                                        <  SRR4302537.4992298/94‑1 (MQ=60)

                      AAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTG                                                                        <  SRR4302537.2187092/94‑1 (MQ=60)

                      AAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTG                                                                        >  SRR4302537.5118459/1‑94 (MQ=60)

                        AGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTTGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTG                                                                      <  SRR4302537.3020416/94‑1 (MQ=60)

                        AGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTG                                                                      >  SRR4302537.3824394/1‑94 (MQ=60)

                        AGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTG                                                                      <  SRR4302537.6491576/94‑1 (MQ=60)

                           GCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCA                                                                   <  SRR4302537.1954434/94‑1 (MQ=60)

                             CGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACT                                                                 <  SRR4302537.2017755/94‑1 (MQ=60)

                              GGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTT                                                                >  SRR4302537.1949322/1‑94 (MQ=60)

                                TGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTC                                                              >  SRR4302537.6050727/1‑94 (MQ=60)

                                 GACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCG                                                             >  SRR4302537.5717176/1‑94 (MQ=60)

                                 GACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCG                                                             <  SRR4302537.925120/94‑1 (MQ=60)

                                 GACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCG                                                             >  SRR4302537.4791819/1‑94 (MQ=60)

                                 GACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCG                                                             <  SRR4302537.4206009/94‑1 (MQ=60)

                                   CCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCG                                                           >  SRR4302537.1954076/1‑94 (MQ=60)

                                   CCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCG                                                           >  SRR4302537.729187/1‑94 (MQ=60)

                                   CCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCG                                                           <  SRR4302537.2488762/94‑1 (MQ=60)

                                   CCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCG                                                           >  SRR4302537.4383749/1‑94 (MQ=60)

                                     TTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCA                                                         <  SRR4302537.5310203/94‑1 (MQ=60)

                                       TGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAG                                                       <  SRR4302537.4774733/94‑1 (MQ=60)

                                        GTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGC                                                      >  SRR4302537.3084252/1‑94 (MQ=60)

                                         TTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCA                                                     >  SRR4302537.201465/1‑94 (MQ=60)

                                          TCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAA                                                    <  SRR4302537.1163531/94‑1 (MQ=60)

                                          TCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAA                                                    >  SRR4302537.637223/1‑94 (MQ=60)

                                          TCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAA                                                    <  SRR4302537.2503953/94‑1 (MQ=60)

                                           CCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAAC                                                   <  SRR4302537.4599016/94‑1 (MQ=60)

                                           CCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAAC                                                   >  SRR4302537.4276056/1‑94 (MQ=60)

                                            CGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACA                                                  >  SRR4302537.3691098/1‑94 (MQ=60)

                                            CGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACA                                                  >  SRR4302537.2312947/1‑94 (MQ=60)

                                             GCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACAT                                                 >  SRR4302537.170554/1‑94 (MQ=60)

                                             GCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACAT                                                 <  SRR4302537.1837728/94‑1 (MQ=60)

                                             GCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACAT                                                 <  SRR4302537.2299164/94‑1 (MQ=60)

                                               GGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCA                                               <  SRR4302537.5101217/94‑1 (MQ=60)

                                               GGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCA                                               >  SRR4302537.5524037/1‑94 (MQ=60)

                                               GGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCA                                               >  SRR4302537.251427/1‑94 (MQ=60)

                                                  CTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGT                                            >  SRR4302537.4341649/1‑94 (MQ=60)

                                                  CTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGT                                            <  SRR4302537.5050515/94‑1 (MQ=60)

                                                  CTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGT                                            <  SRR4302537.781721/94‑1 (MQ=60)

                                                  CTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGT                                            >  SRR4302537.5974820/1‑94 (MQ=60)

                                                  CTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGT                                            <  SRR4302537.6231413/94‑1 (MQ=60)

                                                   TATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTT                                           <  SRR4302537.1832408/94‑1 (MQ=60)

                                                   TATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTT                                           >  SRR4302537.6265554/1‑94 (MQ=60)

                                                     TCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCT                                         <  SRR4302537.3713172/94‑1 (MQ=60)

                                                     TCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCT                                         <  SRR4302537.2560811/94‑1 (MQ=60)

                                                      CACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTG                                        >  SRR4302537.1012541/1‑94 (MQ=60)

                                                        CTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAG                                      >  SRR4302537.5522265/1‑94 (MQ=60)

                                                        CTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAG                                      >  SRR4302537.2047603/1‑94 (MQ=60)

                                                        CTATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAG                                      >  SRR4302537.802268/1‑94 (MQ=60)

                                                         TATCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGC                                     >  SRR4302537.2431870/1‑94 (MQ=60)

                                                           TCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTG                                   >  SRR4302537.3333264/1‑94 (MQ=60)

                                                           TCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTG                                   <  SRR4302537.6413934/94‑1 (MQ=60)

                                                           TCATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTG                                   <  SRR4302537.5977544/94‑1 (MQ=60)

                                                            CATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGC                                  >  SRR4302537.3251061/1‑94 (MQ=60)

                                                            CATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGC                                  <  SRR4302537.3909499/94‑1 (MQ=60)

                                                             ATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCA                                 <  SRR4302537.4498903/94‑1 (MQ=60)

                                                             ATTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGAA                                 <  SRR4302537.1176028/94‑1 (MQ=60)

                                                              TTGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCAT                                <  SRR4302537.1557784/94‑1 (MQ=60)

                                                               TGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATT                               <  SRR4302537.952312/94‑1 (MQ=60)

                                                               TGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATT                               <  SRR4302537.4885446/94‑1 (MQ=60)

                                                               TGATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATT                               >  SRR4302537.1967972/1‑94 (MQ=60)

                                                                GATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGGAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAAGGTCTGAGCTGCATTG                              >  SRR4302537.5532216/1‑94 (MQ=60)

                                                                GATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTG                              <  SRR4302537.5523246/94‑1 (MQ=60)

                                                                 ATTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGC                             <  SRR4302537.2058396/94‑1 (MQ=60)

                                                                  TTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCG                            >  SRR4302537.706961/1‑94 (MQ=60)

                                                                  TTTTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCG                            >  SRR4302537.1925991/1‑94 (MQ=60)

                                                                    TTGTCGCACTCATCAATTGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAA                          <  SRR4302537.1601952/94‑1 (MQ=60)

                                                                    TTGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAA                          <  SRR4302537.791527/94‑1 (MQ=60)

                                                                     TGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAAT                         <  SRR4302537.4416831/94‑1 (MQ=60)

                                                                     TGTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAAT                         <  SRR4302537.1420981/94‑1 (MQ=60)

                                                                      GTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATC                        >  SRR4302537.1043380/1‑94 (MQ=60)

                                                                      GTCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATC                        >  SRR4302537.4332400/1‑94 (MQ=60)

                                                                       TCGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCA                       <  SRR4302537.94410/94‑1 (MQ=60)

                                                                        CGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAA                      >  SRR4302537.4725237/1‑94 (MQ=60)

                                                                        CGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAA                      <  SRR4302537.3835902/94‑1 (MQ=60)

                                                                        CGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAA                      >  SRR4302537.5344634/1‑94 (MQ=60)

                                                                        CGCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCCGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAA                      >  SRR4302537.287320/1‑94 (MQ=60)

                                                                         GCACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAA                     >  SRR4302537.331196/1‑94 (MQ=60)

                                                                          CACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAAT                    <  SRR4302537.2103418/94‑1 (MQ=60)

                                                                          CACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAAT                    >  SRR4302537.5761556/1‑94 (MQ=60)

                                                                           ACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATG                   >  SRR4302537.2422768/1‑94 (MQ=60)

                                                                           ACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATG                   <  SRR4302537.5561177/94‑1 (MQ=60)

                                                                           ACTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATG                   <  SRR4302537.4317806/94‑1 (MQ=60)

                                                                            CTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCCCTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCCTTGCGAATCAAATGA                  >  SRR4302537.884727/1‑94 (MQ=60)

                                                                            CTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGA                  >  SRR4302537.1463667/1‑94 (MQ=60)

                                                                            CTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGA                  <  SRR4302537.3917981/94‑1 (MQ=60)

                                                                            CTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGA                  >  SRR4302537.5265008/1‑94 (MQ=60)

                                                                            CTCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGA                  >  SRR4302537.1094482/1‑94 (MQ=60)

                                                                             TCATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGAC                 >  SRR4302537.5139149/1‑94 (MQ=60)

                                                                              CATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACA                >  SRR4302537.4379465/1‑94 (MQ=60)

                                                                              CATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACA                >  SRR4302537.3390960/1‑94 (MQ=60)

                                                                              CATCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACA                <  SRR4302537.4416778/94‑1 (MQ=60)

                                                                              CATCAATGGCAGTTGCTGCTCTGGGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACA                <  SRR4302537.4361178/94‑1 (MQ=60)

                                                                                TCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAAC              <  SRR4302537.1796011/94‑1 (MQ=60)

                                                                                TCAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAAC              <  SRR4302537.928519/94‑1 (MQ=60)

                                                                                 CAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACG             <  SRR4302537.1893167/94‑1 (MQ=60)

                                                                                 CAATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACG             >  SRR4302537.3471068/1‑94 (MQ=60)

                                                                                  AATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGG            <  SRR4302537.6011742/94‑1 (MQ=60)

                                                                                  AATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCGGCATTGCGAATCAAATGACAACGG            <  SRR4302537.1618198/94‑1 (MQ=60)

                                                                                   ATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGA           >  SRR4302537.6410929/1‑94 (MQ=60)

                                                                                   ATGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGA           <  SRR4302537.1976687/94‑1 (MQ=60)

                                                                                    TGGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAA          <  SRR4302537.4372600/94‑1 (MQ=60)

                                                                                     GGTAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAG         <  SRR4302537.1069973/94‑1 (MQ=60)

                                                                                     GGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAG         <  SRR4302537.4659588/94‑1 (MQ=60)

                                                                                     GGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAG         <  SRR4302537.2503626/94‑1 (MQ=60)

                                                                                     GGCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAG         <  SRR4302537.4286591/94‑1 (MQ=60)

                                                                                      GCAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGA        >  SRR4302537.5157673/1‑94 (MQ=60)

                                                                                       CAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGAT       <  SRR4302537.3095575/94‑1 (MQ=60)

                                                                                       CAGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGAT       <  SRR4302537.5229421/94‑1 (MQ=60)

                                                                                        AGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATA      >  SRR4302537.2475801/1‑94 (MQ=60)

                                                                                        AGTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATA      >  SRR4302537.4438708/1‑94 (MQ=60)

                                                                                         GTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATAT     <  SRR4302537.2313856/94‑1 (MQ=60)

                                                                                         GTTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATAT     <  SRR4302537.1363536/94‑1 (MQ=60)

                                                                                          TTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATT    <  SRR4302537.2576967/94‑1 (MQ=60)

                                                                                          TTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATT    <  SRR4302537.4133860/94‑1 (MQ=60)

                                                                                          TTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATT    <  SRR4302537.1415543/94‑1 (MQ=60)

                                                                                          TTGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATT    <  SRR4302537.524381/94‑1 (MQ=60)

                                                                                           TGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATTC   <  SRR4302537.1045364/94‑1 (MQ=60)

                                                                                           TGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATTC   >  SRR4302537.4083655/1‑94 (MQ=60)

                                                                                           TGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATTC   >  SRR4302537.3607519/1‑94 (MQ=60)

                                                                                           TGCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATTC   <  SRR4302537.3147079/94‑1 (MQ=60)

                                                                                            GCTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATTCT  >  SRR4302537.4189113/1‑94 (MQ=60)

TAATATTAAACGCTGCCTGGGGAAAGTGCCGGTGACCTTTGTTCCGCGGACTATCACTATCATTGATTTTGTCGCACTCATCAATGGCAGTTACTGCTCTGTGCCTGAAGCGGCTGTGTCACTTTCGCGCAAGCAACATCAGGTTCTGAGCTGCATTGCGAATCAAATGACAACGGAAGATATTCT  >  NC_000913/3652537‑3652722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`