Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,703,857	A→G	V493A (GTG→GCG)	dppA ←	dipeptide transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,703,857	0	A	G	100.0%	913.1 / NA	263	V493A (GTG→GCG)	dppA	dipeptide transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (119/144); total (119/144)

Only 100 of 282 total aligned reads displayed.

GGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAG  >  NC_000913/3703767‑3703946

 gATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATcgcca                                                                                        >  1:3853701/1‑93 (MQ=255)

 gATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATcgcca                                                                                        >  2:3876112/1‑93 (MQ=255)

   tCACCCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCgccacc                                                                                      <  1:2724276/93‑1 (MQ=255)

   tCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCgccacc                                                                                      <  2:5046253/93‑1 (MQ=255)

     aaCCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTg                                                                                    >  1:134076/1‑93 (MQ=255)

     aaCCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTg                                                                                    >  1:5950065/1‑93 (MQ=255)

     aaCCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTg                                                                                    <  2:2918615/93‑1 (MQ=255)

      aCCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTgc                                                                                   >  1:1292811/1‑93 (MQ=255)

      aCCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTgc                                                                                   <  2:1635605/93‑1 (MQ=255)

        cacaTAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTgcgc                                                                                 <  2:3061549/93‑1 (MQ=255)

         acaTAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCt                                                                                <  1:5464644/93‑1 (MQ=255)

         acaTAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCt                                                                                >  1:5033731/1‑93 (MQ=255)

         acaTAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCt                                                                                <  1:4215271/93‑1 (MQ=255)

          caTAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCtt                                                                               <  1:2990148/93‑1 (MQ=255)

          caTAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCtt                                                                               >  1:6463226/1‑93 (MQ=255)

           aTAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCttg                                                                              >  1:3748657/1‑93 (MQ=255)

             aGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCttgtt                                                                            <  2:6454861/93‑1 (MQ=255)

             aGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCttgtt                                                                            <  2:1975433/93‑1 (MQ=255)

              gCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCttgttt                                                                           >  1:81041/1‑93 (MQ=255)

               ccTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCttgtttg                                                                          >  1:4479238/1‑93 (MQ=255)

               ccTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCttgtttg                                                                          <  1:4292236/93‑1 (MQ=255)

                   tAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACa                                                                      <  2:2881725/93‑1 (MQ=255)

                   tAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACa                                                                      >  1:2123707/1‑93 (MQ=255)

                    aaCTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAg                                                                     <  1:589736/93‑1 (MQ=255)

                    aaCTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAg                                                                     <  1:4505485/93‑1 (MQ=255)

                      cttcttTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGtt                                                                   <  2:5961562/93‑1 (MQ=255)

                        tcttTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCa                                                                 >  1:2478950/1‑93 (MQ=255)

                        tcttTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCa                                                                 >  2:6116885/1‑93 (MQ=255)

                          tttACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAAc                                                               >  2:1467090/1‑93 (MQ=255)

                          tttACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAAc                                                               <  1:1415861/93‑1 (MQ=255)

                           ttACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAAcg                                                              <  1:5679833/93‑1 (MQ=255)

                             aCGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAAcgcg                                                            <  2:3754999/93‑1 (MQ=255)

                               gTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTACGCTTGTTTGTACAGTTCAACGCGtt                                                          <  2:3244350/93‑1 (MQ=255)

                                tACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGttt                                                         >  2:2593310/1‑93 (MQ=255)

                                tACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGttt                                                         <  2:904574/93‑1 (MQ=255)

                                  ccGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTAt                                                       <  1:2566187/93‑1 (MQ=255)

                                   cGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTAtt                                                      <  1:1074417/93‑1 (MQ=255)

                                    ggTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATtg                                                     <  2:5654292/93‑1 (MQ=255)

                                     gTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATtgt                                                    >  1:3659125/1‑93 (MQ=255)

                                     gTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATtgt                                                    >  2:2668804/1‑93 (MQ=255)

                                      ttCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATtgtg                                                   >  1:5560870/1‑93 (MQ=255)

                                      ttCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATtgtg                                                   >  2:6214319/1‑93 (MQ=255)

                                        cAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgt                                                 >  1:5235019/1‑93 (MQ=255)

                                        cAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgt                                                 <  2:5933690/93‑1 (MQ=255)

                                        cAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgt                                                 >  2:4834176/1‑93 (MQ=255)

                                         aaaCACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtc                                                >  1:2287667/1‑93 (MQ=255)

                                         aaaCACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtc                                                >  2:1217503/1‑93 (MQ=255)

                                          aaCACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtcg                                               >  2:5621016/1‑93 (MQ=255)

                                           acacGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtcgt                                              >  1:4395519/1‑93 (MQ=255)

                                            cacGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtcgtc                                             >  1:5765642/1‑93 (MQ=255)

                                            cacGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtcgtc                                             <  2:2366002/93‑1 (MQ=255)

                                            cacGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtcgtc                                             <  2:2271184/93‑1 (MQ=255)

                                              cGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCgg                                           <  1:2003703/93‑1 (MQ=255)

                                               ggTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGt                                          <  2:450025/93‑1 (MQ=255)

                                                gTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTa                                         <  2:5564078/93‑1 (MQ=255)

                                                gTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTa                                         >  1:1237646/1‑93 (MQ=255)

                                                  ggAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGc                                       >  2:1730261/1‑93 (MQ=255)

                                                    aGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCAc                                     <  1:5307766/93‑1 (MQ=255)

                                                      tGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCAcgc                                   <  2:2205789/93‑1 (MQ=255)

                                                         gCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGcc                                >  2:284545/1‑93 (MQ=255)

                                                         gCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGcc                                >  2:4637633/1‑93 (MQ=255)

                                                           gatgatCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCgg                              >  2:3647826/1‑93 (MQ=255)

                                                             tgatCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGtt                            <  2:1892778/93‑1 (MQ=255)

                                                             tgatCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGtt                            >  1:6279621/1‑93 (MQ=255)

                                                             tgatCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGtt                            <  1:2777992/93‑1 (MQ=255)

                                                             tgatCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGtt                            >  2:3896483/1‑93 (MQ=255)

                                                              gatCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTg                           <  1:6393215/93‑1 (MQ=255)

                                                              gatCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTg                           >  2:4979965/1‑93 (MQ=255)

                                                                tCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGaa                         <  1:1728132/93‑1 (MQ=255)

                                                                tCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGaa                         <  2:1580737/93‑1 (MQ=255)

                                                                 cAGTGCCGGAGCCTGATCGTGCATCGACACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAAt                        <  2:6267137/93‑1 (MQ=255)

                                                                   gTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCa                      <  1:3175518/93‑1 (MQ=255)

                                                                   gTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCa                      >  1:656071/1‑93 (MQ=255)

                                                                   gTGCCGGAGCCTGATCGCGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCa                      >  1:1013879/1‑93 (MQ=255)

                                                                    tGCCGGACCCTGATCTTGCCTCGCCACCTGCGCTTGTTTGTACAGTTCAATGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAg                     <  2:2522876/93‑1 (MQ=255)

                                                                        ggAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCt                 <  2:6030488/93‑1 (MQ=255)

                                                                          aGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCACCGGTTGAATCAGATCTTc               <  2:6326952/93‑1 (MQ=255)

                                                                           gCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCa              >  2:2145401/1‑93 (MQ=255)

                                                                           gCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCa              >  1:5632098/1‑93 (MQ=255)

                                                                            ccTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCaa             >  2:6173265/1‑93 (MQ=255)

                                                                            ccTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCaa             <  2:1689824/93‑1 (MQ=255)

                                                                             cTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCaaa            >  1:4630133/1‑93 (MQ=255)

                                                                             cTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCaaa            <  1:1884559/93‑1 (MQ=255)

                                                                             cTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCaaa            >  2:4094491/1‑93 (MQ=255)

                                                                               gATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACg          <  2:5405089/93‑1 (MQ=255)

                                                                               gATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACg          <  2:3401065/93‑1 (MQ=255)

                                                                                aTCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACgg         >  1:2633686/1‑93 (MQ=255)

                                                                                aTCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACgg         <  1:242563/93‑1 (MQ=255)

                                                                                 tCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGt        >  1:5097326/1‑93 (MQ=255)

                                                                                 tCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGt        <  2:1144679/93‑1 (MQ=255)

                                                                                 tCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGt        >  1:4842893/1‑93 (MQ=255)

                                                                                   gTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGttt      <  2:5180315/93‑1 (MQ=255)

                                                                                   ctGCATCGCCGCCTTCGCTTGTTTGTGCAGTTAATCGCGTTTATTGTGGTCGTCGTTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGttt      <  2:1185585/92‑1 (MQ=255)

                                                                                    tGCATCGCCATCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTg     <  2:3142650/93‑1 (MQ=255)

                                                                                     gCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGt    <  1:2422943/93‑1 (MQ=255)

                                                                                     gCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGt    >  1:3106789/1‑93 (MQ=255)

                                                                                     gCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGt    >  1:3497544/1‑93 (MQ=255)

                                                                                      cATCGCCACCTGCTCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTa   <  1:4990023/93‑1 (MQ=255)

                                                                                      cATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTa   <  1:4080755/93‑1 (MQ=255)

                                                                                       aTCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAg  <  2:1395464/93‑1 (MQ=255)

GGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAG  >  NC_000913/3703767‑3703946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAGCAC  >  NC_000913/3703764‑3703949

AATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCG                                                                                              >  SRR4302537.750900/1‑94 (MQ=60)

AATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCG                                                                                              <  SRR4302537.524802/94‑1 (MQ=60)

AATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCG                                                                                              <  SRR4302537.4473817/94‑1 (MQ=60)

AATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCG                                                                                              >  SRR4302537.2074761/1‑94 (MQ=60)

 ATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCTGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGC                                                                                             >  SRR4302537.4118023/1‑94 (MQ=60)

  TGGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCC                                                                                            >  SRR4302537.69452/1‑94 (MQ=60)

   GGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCA                                                                                           >  SRR4302537.3880681/1‑94 (MQ=60)

     ATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACC                                                                                         >  SRR4302537.2053343/1‑94 (MQ=60)

     ATCAACAACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACC                                                                                         >  SRR4302537.2188910/1‑94 (MQ=60)

      TCACCCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCT                                                                                        <  SRR4302537.2743303/94‑1 (MQ=60)

      TCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCT                                                                                        <  SRR4302537.2969128/94‑1 (MQ=60)

      TCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCT                                                                                        <  SRR4302537.1425280/94‑1 (MQ=60)

       CAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTG                                                                                       >  SRR4302537.5990909/1‑94 (MQ=60)

       CAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTG                                                                                       >  SRR4302537.5678441/1‑94 (MQ=60)

       CAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTG                                                                                       >  SRR4302537.4372666/1‑94 (MQ=60)

       CAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTG                                                                                       >  SRR4302537.135025/1‑94 (MQ=60)

       CAACCACATAGCCCTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTG                                                                                       <  SRR4302537.5864218/94‑1 (MQ=60)

        AACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGC                                                                                      >  SRR4302537.660212/1‑94 (MQ=60)

        AACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGC                                                                                      <  SRR4302537.5632079/94‑1 (MQ=60)

        AACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGC                                                                                      >  SRR4302537.4121303/1‑94 (MQ=60)

        AACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGC                                                                                      >  SRR4302537.2704131/1‑94 (MQ=60)

        AACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGC                                                                                      >  SRR4302537.1301801/1‑94 (MQ=60)

           CACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCT                                                                                   >  SRR4302537.5068385/1‑94 (MQ=60)

           CACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCT                                                                                   <  SRR4302537.3473392/94‑1 (MQ=60)

            ACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTT                                                                                  >  SRR4302537.6507012/1‑94 (MQ=60)

            ACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTT                                                                                  <  SRR4302537.4244658/94‑1 (MQ=60)

            ACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTT                                                                                  >  SRR4302537.5379609/1‑94 (MQ=60)

            ACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTT                                                                                  <  SRR4302537.5501917/94‑1 (MQ=60)

             CATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTG                                                                                 >  SRR4302537.3774984/1‑94 (MQ=60)

             CATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTG                                                                                 <  SRR4302537.3011024/94‑1 (MQ=60)

             CATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTG                                                                                 >  SRR4302537.219478/1‑94 (MQ=60)

              CTAGCCTTTATCTTCTTTCCGTACCGGTTCAAACACGGTGGAGTGAGCGATCATCAGTGCCGGAGCCTGATCCTGCATCGCCACCTGCGCTTGT                                                                                <  SRR4302537.1986571/94‑1 (MQ=60)

              ATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGT                                                                                >  SRR4302537.2013905/1‑94 (MQ=60)

               TAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTT                                                                               <  SRR4302537.4736696/94‑1 (MQ=60)

               TAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTT                                                                               >  SRR4302537.3617951/1‑94 (MQ=60)

                AGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTT                                                                              >  SRR4302537.81639/1‑94 (MQ=60)

                AGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGCGAGCGATGATCAGTGCCGGAGGCTGATCGTGCATCGCCACCTGCGCTTGTTT                                                                              >  SRR4302537.5288898/1‑94 (MQ=60)

                AGCCTTTAACTTCTTTACGTACCGGTTCAAACAAGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTT                                                                              <  SRR4302537.2440629/94‑1 (MQ=60)

                 GCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTG                                                                             >  SRR4302537.4510225/1‑94 (MQ=60)

                 GCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTG                                                                             <  SRR4302537.4546004/94‑1 (MQ=60)

                  CCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGT                                                                            <  SRR4302537.4322068/94‑1 (MQ=60)

                   CTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTA                                                                           >  SRR4302537.1303067/1‑94 (MQ=60)

                   CTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTA                                                                           >  SRR4302537.6344025/1‑94 (MQ=60)

                     TTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACA                                                                         <  SRR4302537.5330926/94‑1 (MQ=60)

                     TTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACA                                                                         >  SRR4302537.2138648/1‑94 (MQ=60)

                      TAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAG                                                                        <  SRR4302537.4652057/94‑1 (MQ=60)

                       AACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGT                                                                       <  SRR4302537.4536640/94‑1 (MQ=60)

                       AACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGT                                                                       <  SRR4302537.593763/94‑1 (MQ=60)

                         CTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTC                                                                     >  SRR4302537.1598353/1‑94 (MQ=60)

                          TTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCA                                                                    >  SRR4302537.2496376/1‑94 (MQ=60)

                          TTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCA                                                                    <  SRR4302537.3125042/94‑1 (MQ=60)

                           TCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAA                                                                   <  SRR4302537.2570184/94‑1 (MQ=60)

                           TCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGGTCAA                                                                   >  SRR4302537.3250913/1‑94 (MQ=60)

                             TTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACG                                                                 <  SRR4302537.1147078/94‑1 (MQ=60)

                             TTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACG                                                                 <  SRR4302537.4818383/94‑1 (MQ=60)

                             TTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACG                                                                 <  SRR4302537.1425715/94‑1 (MQ=60)

                              TTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCGGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGC                                                                <  SRR4302537.5781526/94‑1 (MQ=60)

                              TTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGC                                                                >  SRR4302537.1256854/1‑94 (MQ=60)

                              TTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGC                                                                <  SRR4302537.5718688/94‑1 (MQ=60)

                                    ACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTAT                                                          <  SRR4302537.3758732/94‑1 (MQ=60)

                                     CCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATT                                                         <  SRR4302537.2584168/94‑1 (MQ=60)

                                      CGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTG                                                        >  SRR4302537.5696972/1‑94 (MQ=60)

                                      CGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTG                                                        <  SRR4302537.1081816/94‑1 (MQ=60)

                                       GGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGT                                                       >  SRR4302537.3684879/1‑94 (MQ=60)

                                       GGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGT                                                       <  SRR4302537.4526942/94‑1 (MQ=60)

                                       GGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGT                                                       >  SRR4302537.1249227/1‑94 (MQ=60)

                                        GTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTG                                                      >  SRR4302537.5598869/1‑94 (MQ=60)

                                         TTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTCCAGTTCAACGCGTTTATTGTGG                                                     <  SRR4302537.6463009/94‑1 (MQ=60)

                                         TTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGG                                                     >  SRR4302537.4507249/1‑94 (MQ=60)

                                          TCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGT                                                    >  SRR4302537.5271035/1‑94 (MQ=60)

                                           CAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTC                                                   <  SRR4302537.2703812/94‑1 (MQ=60)

                                           CAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTC                                                   >  SRR4302537.2303802/1‑94 (MQ=60)

                                           CAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTC                                                   <  SRR4302537.5853861/94‑1 (MQ=60)

                                            AAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCG                                                  <  SRR4302537.959572/94‑1 (MQ=60)

                                            AAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCG                                                  <  SRR4302537.5038456/94‑1 (MQ=60)

                                             AACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGT                                                 <  SRR4302537.4255925/94‑1 (MQ=60)

                                             AACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGT                                                 >  SRR4302537.4425842/1‑94 (MQ=60)

                                              ACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTC                                                <  SRR4302537.5356446/94‑1 (MQ=60)

                                              ACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTC                                                >  SRR4302537.5805135/1‑94 (MQ=60)

                                                ACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGG                                              <  SRR4302537.1033452/94‑1 (MQ=60)

                                                ACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGG                                              <  SRR4302537.6418122/94‑1 (MQ=60)

                                                 CGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGT                                             <  SRR4302537.2017639/94‑1 (MQ=60)

                                                  GGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTA                                            >  SRR4302537.1246255/1‑94 (MQ=60)

                                                  GGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTA                                            <  SRR4302537.3146562/94‑1 (MQ=60)

                                                    TGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGC                                          >  SRR4302537.3526039/1‑94 (MQ=60)

                                                    TGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGC                                          >  SRR4302537.655626/1‑94 (MQ=60)

                                                      GAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCAC                                        <  SRR4302537.5592630/94‑1 (MQ=60)

                                                       AGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACG                                       <  SRR4302537.5344235/94‑1 (MQ=60)

                                                       AGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACG                                       <  SRR4302537.5626013/94‑1 (MQ=60)

                                                         TGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCG                                     <  SRR4302537.1311430/94‑1 (MQ=60)

                                                            GCGATGATCAGTGCCGGAGCCTGATCGTGCATCGCCGCCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCG                                  <  SRR4302537.3853859/94‑1 (MQ=60)

                                                              GATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGT                                >  SRR4302537.4981312/1‑94 (MQ=60)

                                                               ATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTT                               >  SRR4302537.3846546/1‑94 (MQ=60)

                                                               ATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTT                               >  SRR4302537.6322690/1‑94 (MQ=60)

                                                               ATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTT                               >  SRR4302537.2029886/1‑94 (MQ=60)

                                                               ATGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTT                               >  SRR4302537.3946376/1‑94 (MQ=60)

                                                                TGATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTG                              <  SRR4302537.2797416/94‑1 (MQ=60)

                                                                 GATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGA                             <  SRR4302537.6436761/94‑1 (MQ=60)

                                                                 GATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGA                             >  SRR4302537.404291/1‑94 (MQ=60)

                                                                  ATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAA                            >  SRR4302537.2919862/1‑94 (MQ=60)

                                                                  ATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAA                            >  SRR4302537.2388782/1‑94 (MQ=60)

                                                                  ATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAA                            <  SRR4302537.426915/94‑1 (MQ=60)

                                                                  ATCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGAACGCGCCGGTTGAA                            >  SRR4302537.1399801/1‑94 (MQ=60)

                                                                   TCAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAAT                           <  SRR4302537.1740201/94‑1 (MQ=60)

                                                                    CAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATC                          <  SRR4302537.3014080/94‑1 (MQ=60)

                                                                    CAGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATC                          <  SRR4302537.2576144/94‑1 (MQ=60)

                                                                     AGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCA                         <  SRR4302537.1181166/94‑1 (MQ=60)

                                                                     AGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCA                         <  SRR4302537.4516260/94‑1 (MQ=60)

                                                                     AGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCA                         >  SRR4302537.5188226/1‑94 (MQ=60)

                                                                     AGTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCA                         >  SRR4302537.660543/1‑94 (MQ=60)

                                                                     AGTGCCGGAGCCTGATCGCGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCA                         >  SRR4302537.1020864/1‑94 (MQ=60)

                                                                      GTGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAG                        <  SRR4302537.3197837/94‑1 (MQ=60)

                                                                       TGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGA                       <  SRR4302537.245302/94‑1 (MQ=60)

                                                                       TGCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGA                       >  SRR4302537.4199439/1‑94 (MQ=60)

                                                                        GCCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGAT                      <  SRR4302537.4892019/94‑1 (MQ=60)

                                                                         CCGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATC                     >  SRR4302537.595639/1‑94 (MQ=60)

                                                                          CGGAGCCTGATCGTGCATCGCCGCCTACGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCT                    >  SRR4302537.6466546/1‑94 (MQ=60)

                                                                          CGGAGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCT                    >  SRR4302537.5791175/1‑94 (MQ=60)

                                                                             GGCCTGATCGTGCATCGCCGCCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCA                 <  SRR4302537.5284638/94‑1 (MQ=60)

                                                                             GGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCA                 <  SRR4302537.1876115/94‑1 (MQ=60)

                                                                             AGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCA                 >  SRR4302537.5670629/1‑94 (MQ=60)

                                                                             AGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCA                 <  SRR4302537.5075646/94‑1 (MQ=60)

                                                                             AGCCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCA                 <  SRR4302537.5982284/94‑1 (MQ=60)

                                                                               CCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAA               >  SRR4302537.4662166/1‑94 (MQ=60)

                                                                               CCTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAA               <  SRR4302537.2604890/94‑1 (MQ=60)

                                                                                CTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAAC              <  SRR4302537.5257806/94‑1 (MQ=60)

                                                                                CTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAAC              <  SRR4302537.2750655/94‑1 (MQ=60)

                                                                                CTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAAC              >  SRR4302537.2588159/1‑94 (MQ=60)

                                                                                CTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAAC              <  SRR4302537.6208733/94‑1 (MQ=60)

                                                                                CTGATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAAC              <  SRR4302537.1897666/94‑1 (MQ=60)

                                                                                  GATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGG            >  SRR4302537.2652117/1‑94 (MQ=60)

                                                                                   ATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGT           >  SRR4302537.81082/1‑94 (MQ=60)

                                                                                   ATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGT           >  SRR4302537.4876318/1‑94 (MQ=60)

                                                                                   ATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGT           >  SRR4302537.5132428/1‑94 (MQ=60)

                                                                                   ATCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGT           <  SRR4302537.244282/94‑1 (MQ=60)

                                                                                    TCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTT          >  SRR4302537.1758504/1‑94 (MQ=60)

                                                                                    TCGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTT          <  SRR4302537.4456939/94‑1 (MQ=60)

                                                                                     CGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTT         <  SRR4302537.5068689/94‑1 (MQ=60)

                                                                                     CGTGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTT         <  SRR4302537.2467610/94‑1 (MQ=60)

                                                                                       TGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGT       >  SRR4302537.3522289/1‑94 (MQ=60)

                                                                                       TGCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGT       >  SRR4302537.3128487/1‑94 (MQ=60)

                                                                                        GCATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTA      <  SRR4302537.2440011/94‑1 (MQ=60)

                                                                                         CATCGCCACCTGCTCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAG     <  SRR4302537.5024414/94‑1 (MQ=60)

                                                                                         CATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAG     >  SRR4302537.3182291/1‑94 (MQ=60)

                                                                                         CATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAG     <  SRR4302537.2308165/94‑1 (MQ=60)

                                                                                         CATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAG     <  SRR4302537.4109241/94‑1 (MQ=60)

                                                                                          ATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAGC    >  SRR4302537.401728/1‑94 (MQ=60)

                                                                                          ATCGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAGC    >  SRR4302537.4151244/1‑94 (MQ=60)

                                                                                            CGCCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAGCAC  <  SRR4302537.3197851/94‑1 (MQ=60)

AATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAACGGTTTGTAGCAC  >  NC_000913/3703764‑3703949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`