Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,720,144 T→C Y628C (TAC→TGC)  glyS ← glycine tRNA synthetase beta subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,720,1440TC100.0% 957.5 / NA 272Y628C (TAC→TGC) glySglycine tRNA synthetase beta subunit
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (136/136);  total (136/136)

Only 100 of 278 total aligned reads displayed.

ATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGTACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTCG  >  NC_000913/3720054‑3720233
                                                                                          |                                                                                         
aTGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCAc                                                                                         >  1:4042731/1‑93 (MQ=255)
aTGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCAc                                                                                         >  1:689326/1‑93 (MQ=255)
aTGACCATCACGTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCAc                                                                                         <  2:2232702/93‑1 (MQ=255)
 tGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACg                                                                                        <  1:3904190/93‑1 (MQ=255)
 tGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACg                                                                                        >  2:2622211/1‑93 (MQ=255)
   aCCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGc                                                                                      <  1:1793391/93‑1 (MQ=255)
    ccATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCt                                                                                     >  2:2819685/1‑93 (MQ=255)
     cATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTc                                                                                    <  2:3045963/93‑1 (MQ=255)
      aTCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTANCGACCTTCCGTAANGCACGGCTcc                                                                                   >  2:2551855/1‑93 (MQ=255)
      aTCACTTAATCGAACAAAGCATCAACCGCTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTGCCGTAAAGCACGGCTcc                                                                                   <  2:1732131/93‑1 (MQ=255)
        cACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAg                                                                                 >  2:6188746/1‑93 (MQ=255)
        cACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAg                                                                                 >  2:2399232/1‑93 (MQ=255)
         aCTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGc                                                                                >  2:199219/1‑93 (MQ=255)
          cTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCt                                                                               <  1:1324320/93‑1 (MQ=255)
          cTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCt                                                                               <  1:342416/93‑1 (MQ=255)
              aTCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTc                                                                           >  1:5651151/1‑93 (MQ=255)
               tCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCa                                                                          <  1:997813/93‑1 (MQ=255)
                 gaagaaAGCATCAACCGGTTCACGCAGCTAAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACg                                                                        >  1:4672508/1‑93 (MQ=255)
                  aagaaAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGt                                                                       <  1:4457852/93‑1 (MQ=255)
                  aagaaAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGt                                                                       >  1:6417347/1‑93 (MQ=255)
                   agaaAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTa                                                                      <  1:2266322/93‑1 (MQ=255)
                   agaaAGCATCAACCGGTTCAAGCAGCTCAGCCAGTTCGACCAGAGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGtg                                                                      >  2:6108989/1‑92 (MQ=255)
                    gaaAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAg                                                                     >  1:5828436/1‑93 (MQ=255)
                        gCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGcacc                                                                 >  2:5796726/1‑93 (MQ=255)
                          aTCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGcaccac                                                               >  1:4331421/1‑93 (MQ=255)
                          aTCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGcaccac                                                               >  1:242449/1‑93 (MQ=255)
                           tCACCCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACcaca                                                              <  2:4505278/93‑1 (MQ=255)
                           tCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACcaca                                                              >  2:2686027/1‑93 (MQ=255)
                           tCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACcaca                                                              >  2:1207334/1‑93 (MQ=255)
                             aaCCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAAc                                                            >  2:386700/1‑93 (MQ=255)
                               ccGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCt                                                          <  1:3883963/93‑1 (MQ=255)
                               ccGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCt                                                          <  2:3712878/93‑1 (MQ=255)
                               ccGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCt                                                          <  1:2866480/93‑1 (MQ=255)
                                cGGTTCACGCAGCTCAGCCAGTTCGGCCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTg                                                         >  2:3261661/1‑93 (MQ=255)
                                 ggTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGc                                                        >  2:5620162/1‑93 (MQ=255)
                                   ttCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCAt                                                      <  1:4508228/93‑1 (MQ=255)
                                   ttCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCAt                                                      >  2:5981666/1‑93 (MQ=255)
                                    tCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATc                                                     <  2:4634199/93‑1 (MQ=255)
                                      aCGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGc                                                   >  1:5118039/1‑93 (MQ=255)
                                      aCGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGc                                                   >  1:4112954/1‑93 (MQ=255)
                                      aCGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGc                                                   <  1:5685948/93‑1 (MQ=255)
                                        gCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCa                                                 >  2:2893508/1‑93 (MQ=255)
                                          aGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGt                                               <  1:2222859/93‑1 (MQ=255)
                                            cTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGttt                                             <  1:3453912/93‑1 (MQ=255)
                                               aGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAAt                                          <  2:82807/93‑1 (MQ=255)
                                                gCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAAtt                                         <  2:5267634/93‑1 (MQ=255)
                                                gCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAAtt                                         >  2:3121843/1‑93 (MQ=255)
                                                gCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAAtt                                         <  1:2693889/93‑1 (MQ=255)
                                                gCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTAACGTAGCACCACAACCTGCATCGCCAGTTTAAtt                                         >  1:6047615/1‑93 (MQ=255)
                                                 ccAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAAttt                                        <  2:4013547/93‑1 (MQ=255)
                                                  cAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATttc                                       >  2:6350047/1‑93 (MQ=255)
                                                   aGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATttct                                      <  2:3769397/93‑1 (MQ=255)
                                                    gTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATttctt                                     >  1:356120/1‑93 (MQ=255)
                                                     ttCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATttcttc                                    <  2:3479471/93‑1 (MQ=255)
                                                     ttCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGCAGCACCACAACCTGCATCGCCAGTTTAATttcttc                                    >  1:5195712/1‑93 (MQ=255)
                                                       cGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCg                                  <  2:4351546/93‑1 (MQ=255)
                                                         aCCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGc                                <  2:5134740/93‑1 (MQ=255)
                                                         aCCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGc                                <  1:1583998/93‑1 (MQ=255)
                                                           cAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGctc                              <  2:565948/93‑1 (MQ=255)
                                                            aGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGctct                             <  1:6360472/93‑1 (MQ=255)
                                                             gcgcATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCtt                            >  2:3965672/1‑93 (MQ=255)
                                                             gcgcATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCtt                            >  2:457604/1‑93 (MQ=255)
                                                              cgcATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCttt                           <  1:1119165/93‑1 (MQ=255)
                                                               gcATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTc                          >  2:1920121/1‑93 (MQ=255)
                                                                cATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCa                         >  1:4228406/1‑93 (MQ=255)
                                                                cATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCa                         <  1:5251510/93‑1 (MQ=255)
                                                                 aTCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAg                        <  1:1870071/93‑1 (MQ=255)
                                                                 aTCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAg                        <  2:5439977/93‑1 (MQ=255)
                                                                  tCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAgg                       >  1:4003905/1‑93 (MQ=255)
                                                                  tCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAgg                       <  2:5349831/93‑1 (MQ=255)
                                                                    cTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGt                     >  1:3744825/1‑93 (MQ=255)
                                                                    cTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGt                     >  1:91752/1‑93 (MQ=255)
                                                                     tGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTa                    <  2:1570237/93‑1 (MQ=255)
                                                                      ggTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTag                   <  2:746523/93‑1 (MQ=255)
                                                                       gTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTaga                  <  2:5751819/93‑1 (MQ=255)
                                                                       gTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTaga                  <  1:2095373/93‑1 (MQ=255)
                                                                       gTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTaga                  <  1:5769488/93‑1 (MQ=255)
                                                                         aaCGACCTTCCGTAAAGCACGGGTCAGGCTTGTCCCGAAGACCCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTGGAgg                >  2:1291813/1‑93 (MQ=255)
                                                                         aaCGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAgg                <  1:3960108/93‑1 (MQ=255)
                                                                          aCGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGc               >  2:4927060/1‑93 (MQ=255)
                                                                            gACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCAt             <  2:204452/93‑1 (MQ=255)
                                                                            gACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCAt             <  1:325212/93‑1 (MQ=255)
                                                                             aCCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCAtt            >  2:4757019/1‑93 (MQ=255)
                                                                              ccTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTc           >  1:4180315/1‑93 (MQ=255)
                                                                               cTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCa          >  1:1460694/1‑93 (MQ=255)
                                                                                ttCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGCGGCATTAAc         >  2:1401093/1‑93 (MQ=255)
                                                                                ttCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCAc         >  1:2127421/1‑93 (MQ=255)
                                                                                 tCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCAcg        >  2:6253926/1‑93 (MQ=255)
                                                                                 tCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCAcg        <  1:1062711/93‑1 (MQ=255)
                                                                                  ccGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCAcgc       <  2:3572441/93‑1 (MQ=255)
                                                                                    gTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCgg     >  1:315972/1‑93 (MQ=255)
                                                                                    gTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCgg     >  1:2648345/1‑93 (MQ=255)
                                                                                    gTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCgg     >  1:4877721/1‑93 (MQ=255)
                                                                                    gTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCgg     <  1:6015389/93‑1 (MQ=255)
                                                                                     tAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGt    <  1:3032473/93‑1 (MQ=255)
                                                                                     tAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGt    <  1:4937604/93‑1 (MQ=255)
                                                                                     tAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGt    >  1:5956211/1‑93 (MQ=255)
                                                                                      aaaGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTc   <  1:5561628/93‑1 (MQ=255)
                                                                                      aaaGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTc   <  2:3346389/93‑1 (MQ=255)
                                                                                      aaaGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGAAGAGGCATTCACGCGGTc   >  2:4430368/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGTACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTCG  >  NC_000913/3720054‑3720233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACCATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGTACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTCGCTC  >  NC_000913/3720051‑3720236
                                                                                             |                                                                                            
ACTATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCGCGCAGCTCAGCCAGTTCGACCAGCGCATCCGGGTAACGACCTTCCGTAAAGC                                                                                              <  SRR4302537.2654198/94‑1 (MQ=60)
  CATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCAC                                                                                            >  SRR4302537.4071003/1‑94 (MQ=60)
  CATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCAC                                                                                            <  SRR4302537.6061646/94‑1 (MQ=60)
  CATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCAC                                                                                            <  SRR4302537.3240477/94‑1 (MQ=60)
  CATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCAC                                                                                            <  SRR4302537.5689856/94‑1 (MQ=60)
  CATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCAC                                                                                            >  SRR4302537.694047/1‑94 (MQ=60)
  CATGACCATCACTTTATCGAAGAAAGCATCAACCGGTGCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCAC                                                                                            <  SRR4302537.4004827/94‑1 (MQ=60)
   ATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACG                                                                                           <  SRR4302537.3876756/94‑1 (MQ=60)
   ATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACG                                                                                           >  SRR4302537.1839086/1‑94 (MQ=60)
    TGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGG                                                                                          <  SRR4302537.3931486/94‑1 (MQ=60)
     GACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGC                                                                                         >  SRR4302537.5544246/1‑94 (MQ=60)
      ACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCT                                                                                        <  SRR4302537.4236334/94‑1 (MQ=60)
      ACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCT                                                                                        <  SRR4302537.1805905/94‑1 (MQ=60)
       CCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTC                                                                                       >  SRR4302537.6426560/1‑94 (MQ=60)
         ATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGNCCTTCCGTAAAGCACNGCTNCA                                                                                     >  SRR4302537.5281912/1‑94 (MQ=60)
            ACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACTAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCT                                                                                  <  SRR4302537.3489215/94‑1 (MQ=60)
             CTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTT                                                                                 <  SRR4302537.1333554/94‑1 (MQ=60)
             CTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTT                                                                                 <  SRR4302537.344790/94‑1 (MQ=60)
             CTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTT                                                                                 <  SRR4302537.4259438/94‑1 (MQ=60)
               TTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGT                                                                               >  SRR4302537.4187934/1‑94 (MQ=60)
                TATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTC                                                                              >  SRR4302537.5689824/1‑94 (MQ=60)
                 ATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCA                                                                             <  SRR4302537.4607713/94‑1 (MQ=60)
                 ATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCA                                                                             <  SRR4302537.5558051/94‑1 (MQ=60)
                 ATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCA                                                                             >  SRR4302537.2440033/1‑94 (MQ=60)
                  TCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCAC                                                                            <  SRR4302537.1004696/94‑1 (MQ=60)
                   CGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACG                                                                           >  SRR4302537.5063355/1‑94 (MQ=60)
                   CGAAGAAAGCATCAACCGGTTCACGCAGCTAAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACG                                                                           >  SRR4302537.4704837/1‑94 (MQ=60)
                   CGAAGAAACCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACG                                                                           <  SRR4302537.368795/94‑1 (MQ=60)
                    GAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGT                                                                          >  SRR4302537.6460986/1‑94 (MQ=60)
                     AAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTA                                                                         >  SRR4302537.5759407/1‑94 (MQ=60)
                     AAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTA                                                                         <  SRR4302537.4488642/94‑1 (MQ=60)
                      AGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAG                                                                        <  SRR4302537.2282327/94‑1 (MQ=60)
                      AGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAG                                                                        >  SRR4302537.5868383/1‑94 (MQ=60)
                       GAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGC                                                                       >  SRR4302537.3750037/1‑94 (MQ=60)
                         AAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCAC                                                                     <  SRR4302537.2207584/94‑1 (MQ=60)
                          AGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACC                                                                    >  SRR4302537.2710030/1‑94 (MQ=60)
                           GCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCA                                                                   >  SRR4302537.6149186/1‑94 (MQ=60)
                            CATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCAC                                                                  >  SRR4302537.4361509/1‑94 (MQ=60)
                            CATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCAC                                                                  >  SRR4302537.4839393/1‑94 (MQ=60)
                            CATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCAC                                                                  >  SRR4302537.244167/1‑94 (MQ=60)
                             ATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACA                                                                 >  SRR4302537.785936/1‑94 (MQ=60)
                              TCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAA                                                                >  SRR4302537.3225759/1‑94 (MQ=60)
                               CAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAAC                                                               <  SRR4302537.4915827/94‑1 (MQ=60)
                                AACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACC                                                              >  SRR4302537.1416908/1‑94 (MQ=60)
                                AACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACC                                                              <  SRR4302537.3916528/94‑1 (MQ=60)
                                AACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACC                                                              >  SRR4302537.6272507/1‑94 (MQ=60)
                                 ACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCT                                                             <  SRR4302537.2892036/94‑1 (MQ=60)
                                  CCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTG                                                            <  SRR4302537.3911131/94‑1 (MQ=60)
                                  CCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTG                                                            <  SRR4302537.2886588/94‑1 (MQ=60)
                                  CCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTG                                                            <  SRR4302537.440215/94‑1 (MQ=60)
                                   CGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGC                                                           <  SRR4302537.2140355/94‑1 (MQ=60)
                                   CGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGC                                                           <  SRR4302537.1979020/94‑1 (MQ=60)
                                   CGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGC                                                           >  SRR4302537.6071050/1‑94 (MQ=60)
                                    GGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCA                                                          >  SRR4302537.1679672/1‑94 (MQ=60)
                                     GTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCAT                                                         <  SRR4302537.3945134/94‑1 (MQ=60)
                                      TTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATC                                                        >  SRR4302537.3323986/1‑94 (MQ=60)
                                      TTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATC                                                        <  SRR4302537.1410692/94‑1 (MQ=60)
                                      TTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATC                                                        <  SRR4302537.4539401/94‑1 (MQ=60)
                                        CACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGC                                                      >  SRR4302537.5153309/1‑94 (MQ=60)
                                        CACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGC                                                      >  SRR4302537.4141688/1‑94 (MQ=60)
                                         ACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCC                                                     <  SRR4302537.3067579/94‑1 (MQ=60)
                                         ACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCC                                                     <  SRR4302537.5724838/94‑1 (MQ=60)
                                          CGCAGCCCAGCCAGTCCGACCAGCGCATCCTGGTAACGACCGTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCA                                                    <  SRR4302537.4538010/94‑1 (MQ=60)
                                           GCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAG                                                   <  SRR4302537.6435592/94‑1 (MQ=60)
                                             AGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTT                                                 <  SRR4302537.2238517/94‑1 (MQ=60)
                                              GCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTT                                                <  SRR4302537.2201299/94‑1 (MQ=60)
                                               CTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTA                                               <  SRR4302537.3478337/94‑1 (MQ=60)
                                               CTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTA                                               >  SRR4302537.4035434/1‑94 (MQ=60)
                                                 CAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAAT                                             >  SRR4302537.1586939/1‑94 (MQ=60)
                                                 CAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAAT                                             >  SRR4302537.2127420/1‑94 (MQ=60)
                                                  AGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATT                                            >  SRR4302537.4089785/1‑94 (MQ=60)
                                                  AGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTAACGTAGCACCACAACCTGCATCGCCAGTTTAATT                                            >  SRR4302537.6089146/1‑94 (MQ=60)
                                                   GCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTT                                           <  SRR4302537.2712713/94‑1 (MQ=60)
                                                    CCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTC                                          <  SRR4302537.3009191/94‑1 (MQ=60)
                                                     CAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCT                                         >  SRR4302537.5994254/1‑94 (MQ=60)
                                                      AGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTT                                        >  SRR4302537.358594/1‑94 (MQ=60)
                                                      AGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTAACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTT                                        <  SRR4302537.3103923/94‑1 (MQ=60)
                                                       GTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTC                                       >  SRR4302537.5715721/1‑94 (MQ=60)
                                                       GTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTC                                       >  SRR4302537.3514445/1‑94 (MQ=60)
                                                       GTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGCAGCACCACAACCTGCATCGCCAGTTTAATTTCTTC                                       >  SRR4302537.5231430/1‑94 (MQ=60)
                                                       GTACGACGAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGTCTCCAGCTTGTCTCGTAGCTCCACAACCTGCATCGCCAGTTTAATTTCTTC                                       <  SRR4302537.5179583/94‑1 (MQ=60)
                                                       ATTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTC                                       <  SRR4302537.4030314/94‑1 (MQ=60)
                                                        TTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCC                                      <  SRR4302537.6008830/94‑1 (MQ=60)
                                                         TCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCG                                     <  SRR4302537.2685782/94‑1 (MQ=60)
                                                            ACCAGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCT                                  <  SRR4302537.1595070/94‑1 (MQ=60)
                                                               AGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTT                               <  SRR4302537.4912502/94‑1 (MQ=60)
                                                               AGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTT                               <  SRR4302537.6403868/94‑1 (MQ=60)
                                                               AGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTT                               >  SRR4302537.3864212/1‑94 (MQ=60)
                                                               AGCGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTT                               <  SRR4302537.5216002/94‑1 (MQ=60)
                                                                 CGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTC                             >  SRR4302537.4381669/1‑94 (MQ=60)
                                                                 CGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTC                             >  SRR4302537.648355/1‑94 (MQ=60)
                                                                 CGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTC                             <  SRR4302537.1126912/94‑1 (MQ=60)
                                                                 CGCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTC                             <  SRR4302537.4060995/94‑1 (MQ=60)
                                                                  GCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCA                            >  SRR4302537.4257848/1‑94 (MQ=60)
                                                                  GCATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCA                            <  SRR4302537.250049/94‑1 (MQ=60)
                                                                   CATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAG                           <  SRR4302537.5287647/94‑1 (MQ=60)
                                                                    ATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGG                          <  SRR4302537.1883087/94‑1 (MQ=60)
                                                                    ATCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGG                          >  SRR4302537.4031931/1‑94 (MQ=60)
                                                                     gccaGGTAACGCCCTTCCGTAAAGCACGGCTCCAGCGTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGG                         <  SRR4302537.5231947/90‑1 (MQ=60)
                                                                     TCCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCCCGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGG                         <  SRR4302537.925916/94‑1 (MQ=60)
                                                                      CCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGT                        >  SRR4302537.92419/1‑94 (MQ=60)
                                                                      CCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGT                        <  SRR4302537.5649091/94‑1 (MQ=60)
                                                                      CCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGT                        >  SRR4302537.1237416/1‑94 (MQ=60)
                                                                      CCTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGT                        >  SRR4302537.3771122/1‑94 (MQ=60)
                                                                       CTGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTA                       <  SRR4302537.868594/94‑1 (MQ=60)
                                                                        TGGTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAG                      >  SRR4302537.4856905/1‑94 (MQ=60)
                                                                          GTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAG                    <  SRR4302537.6028237/94‑1 (MQ=60)
                                                                          GTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAG                    <  SRR4302537.5809032/94‑1 (MQ=60)
                                                                          GTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAG                    <  SRR4302537.2110150/94‑1 (MQ=60)
                                                                          GTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAG                    <  SRR4302537.2097149/94‑1 (MQ=60)
                                                                          GTAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAG                    >  SRR4302537.1477233/1‑94 (MQ=60)
                                                                           TAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGG                   >  SRR4302537.2313612/1‑94 (MQ=60)
                                                                           TAACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGG                   <  SRR4302537.581989/94‑1 (MQ=60)
                                                                            AACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGC                  <  SRR4302537.3987813/94‑1 (MQ=60)
                                                                            AACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGC                  >  SRR4302537.577365/1‑94 (MQ=60)
                                                                            AACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGC                  <  SRR4302537.1198787/94‑1 (MQ=60)
                                                                            AACGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGC                  >  SRR4302537.3985419/1‑94 (MQ=60)
                                                                              CGACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCAT                <  SRR4302537.3273695/94‑1 (MQ=60)
                                                                               GACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATT               <  SRR4302537.327468/94‑1 (MQ=60)
                                                                               GACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATT               <  SRR4302537.4275678/94‑1 (MQ=60)
                                                                               GACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATT               <  SRR4302537.655132/94‑1 (MQ=60)
                                                                                ACCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTC              >  SRR4302537.4209493/1‑94 (MQ=60)
                                                                                 CCTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCA             >  SRR4302537.1470859/1‑94 (MQ=60)
                                                                                  CTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCAC            >  SRR4302537.4123211/1‑94 (MQ=60)
                                                                                  CTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCAC            <  SRR4302537.1082251/94‑1 (MQ=60)
                                                                                  CTTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCAC            >  SRR4302537.2142384/1‑94 (MQ=60)
                                                                                   TTCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACG           <  SRR4302537.1873911/94‑1 (MQ=60)
                                                                                    TCCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGC          <  SRR4302537.1070035/94‑1 (MQ=60)
                                                                                     CCGTAAAGCCCGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCG         <  SRR4302537.2260120/94‑1 (MQ=60)
                                                                                     CCGTAAAGCACTGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCG         <  SRR4302537.3470777/94‑1 (MQ=60)
                                                                                     CCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCG         >  SRR4302537.5026550/1‑94 (MQ=60)
                                                                                     CCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCG         <  SRR4302537.5850359/94‑1 (MQ=60)
                                                                                     CCGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCG         >  SRR4302537.3389159/1‑94 (MQ=60)
                                                                                      CGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGG        >  SRR4302537.2666868/1‑94 (MQ=60)
                                                                                      CGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGG        >  SRR4302537.5875457/1‑94 (MQ=60)
                                                                                      CGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGG        >  SRR4302537.4911421/1‑94 (MQ=60)
                                                                                      CGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGG        >  SRR4302537.4246228/1‑94 (MQ=60)
                                                                                      CGTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGG        >  SRR4302537.318167/1‑94 (MQ=60)
                                                                                       GTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAGCCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGT       <  SRR4302537.2590471/94‑1 (MQ=60)
                                                                                       GTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGT       >  SRR4302537.5997097/1‑94 (MQ=60)
                                                                                       GTAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGT       <  SRR4302537.6056720/94‑1 (MQ=60)
                                                                                        TAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTC      <  SRR4302537.3053617/94‑1 (MQ=60)
                                                                                        TAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTC      <  SRR4302537.4030020/94‑1 (MQ=60)
                                                                                        TAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTC      <  SRR4302537.2817815/94‑1 (MQ=60)
                                                                                        TAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTC      <  SRR4302537.4613529/94‑1 (MQ=60)
                                                                                        TAAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTC      <  SRR4302537.4971659/94‑1 (MQ=60)
                                                                                         AAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTCG     <  SRR4302537.565440/94‑1 (MQ=60)
                                                                                         AAAGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTCG     <  SRR4302537.5599633/94‑1 (MQ=60)
                                                                                           AGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTCGCT   >  SRR4302537.6326786/1‑94 (MQ=60)
                                                                                           AGCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTCGCT   >  SRR4302537.6242014/1‑94 (MQ=60)
                                                                                            GCACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTCGCTC  >  SRR4302537.2402820/1‑94 (MQ=60)
                                                                                             |                                                                                            
ACCATGACCATCACTTTATCGAAGAAAGCATCAACCGGTTCACGCAGCTCAGCCAGTTCGACCAGCGCATCCTGGTAACGACCTTCCGTAAAGTACGGCTCCAGCTTGTCACGTAGCACCACAACCTGCATCGCCAGTTTAATTTCTTCCGGCTCTTTCAGGGTAGAGGCATTCACGCGGTCGCTC  >  NC_000913/3720051‑3720236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑