Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,774,311 |
(A)7→8 |
coding (20/363 nt) |
yibL → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,774,304 | 1 | . | A | 97.0%
| 816.4
/ 15.8
| 233 | coding (13/363 nt) | yibL | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (6/1); new base A (125/101); total (131/102) |
| Fisher's exact test for biased strand distribution p-value = 1.40e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.22e-01 |
Only 100 of 271 total aligned reads displayed.
TACAATGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAAT > NC_000913/3774212‑3774394
|
tACAATGTCATTAGTTGTGAACAAAGCACCTGGGCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCg > 2:1520409/1‑93 (MQ=255)
cAATGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aa > 1:2767182/1‑93 (MQ=255)
aTGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATGCTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaa > 2:1689799/1‑93 (MQ=255)
aTGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaa < 2:4392155/93‑1 (MQ=255)
aTGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaa > 1:6073018/1‑93 (MQ=255)
aTGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaa > 2:4277732/1‑93 (MQ=255)
aTGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaa < 2:3710371/93‑1 (MQ=255)
tGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaaa > 2:2901052/1‑93 (MQ=255)
tCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaaaaa < 1:5770637/93‑1 (MQ=255)
tCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaaaaa > 1:2969946/1‑93 (MQ=255)
cATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaaaaaa > 1:5574356/1‑92 (MQ=255)
cATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaaaaaa > 2:420247/1‑92 (MQ=255)
cATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaaaaaa < 2:1938018/93‑2 (MQ=255)
ttAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑aaaaaaaacg > 1:791209/1‑90 (MQ=255)
gTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGaaa < 1:3858830/93‑1 (MQ=255)
ttGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAAt < 1:1578359/93‑1 (MQ=255)
ttGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAAt > 2:4321609/1‑93 (MQ=255)
ttGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAAt > 1:1097124/1‑93 (MQ=255)
tgtgAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATc < 2:4877502/93‑1 (MQ=255)
tgtgAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATc < 2:1455720/93‑1 (MQ=255)
tgtgAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATc > 1:3584497/1‑93 (MQ=255)
gAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCaaa < 1:3559733/93‑1 (MQ=255)
gAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCaaa > 1:4944570/1‑93 (MQ=255)
gAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCaaa < 2:3650541/93‑1 (MQ=255)
aaCAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAAc < 2:5965600/93‑1 (MQ=255)
aaCAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAAc > 1:357637/1‑93 (MQ=255)
cAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAACGAAATCAAACGcc > 1:3239923/1‑93 (MQ=255)
aaaGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGcc > 1:3991368/1‑93 (MQ=255)
aaGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCt > 2:3999644/1‑93 (MQ=255)
aaGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCt > 2:221269/1‑93 (MQ=255)
aGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTc > 2:4524809/1‑93 (MQ=255)
gCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCa < 2:4980567/93‑1 (MQ=255)
aCCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGc < 2:559754/93‑1 (MQ=255)
cTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGa > 1:5890595/1‑93 (MQ=255)
tGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGAt > 1:4050173/1‑93 (MQ=255)
tGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGAt > 2:1619490/1‑93 (MQ=255)
tGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGAt > 2:5777252/1‑93 (MQ=255)
ggTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATc < 2:3482777/93‑1 (MQ=255)
gTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCg > 2:295421/1‑93 (MQ=255)
gcgcATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCt < 1:1037944/93‑1 (MQ=255)
gcATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTgg > 1:1286956/1‑93 (MQ=255)
cATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGa < 1:5324599/93‑1 (MQ=255)
aTACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGAc > 1:2448766/1‑93 (MQ=255)
tACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACg > 1:896272/1‑93 (MQ=255)
aCTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGc > 1:6128104/1‑93 (MQ=255)
cTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGcc > 1:2823207/1‑93 (MQ=255)
tAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCa < 2:301713/93‑1 (MQ=255)
ggggCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGGCATc > 1:4612529/1‑93 (MQ=255)
ggggCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATc > 2:1402128/1‑93 (MQ=255)
gggCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATcc > 2:5683217/1‑93 (MQ=255)
cTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGcc > 1:1905542/1‑93 (MQ=255)
tataAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGcca > 2:103471/1‑93 (MQ=255)
tataAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGcca < 2:3219585/93‑1 (MQ=255)
ataAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGccac < 2:478409/93‑1 (MQ=255)
taAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGccacc > 2:1298692/1‑93 (MQ=255)
aaaTTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGccacca > 1:2049619/1‑93 (MQ=255)
aTTTATCTTTATCAGAAGCCATCGCATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACcagc > 2:5199946/1‑93 (MQ=255)
aTTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACcagc < 2:2683517/93‑1 (MQ=255)
atctttatcAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGc > 1:5629037/1‑93 (MQ=255)
atctttatcAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGc > 2:4718824/1‑93 (MQ=255)
tctttatcAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGcc > 2:2151102/1‑93 (MQ=255)
ctttatcCGAAGCCATCACATGAAAGAAGTTGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCCGGAAGCCATCCGCCACCAGCAGGCCg > 2:1882398/1‑93 (MQ=255)
tttatcAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGACGa > 2:1159633/1‑93 (MQ=255)
ttatcAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGAt < 2:6188626/93‑1 (MQ=255)
ttatcAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGAt < 2:1800417/93‑1 (MQ=255)
atcAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCt > 1:6252058/1‑93 (MQ=255)
atcAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCt > 1:4275041/1‑93 (MQ=255)
tcAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCtt < 1:1447156/93‑1 (MQ=255)
cAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCttt < 2:2848092/93‑1 (MQ=255)
cAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCttt < 2:5805556/93‑1 (MQ=255)
aGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAACCGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTc < 1:5438392/93‑1 (MQ=255)
gAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCg > 1:3714495/1‑93 (MQ=255)
gAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCg > 1:4533434/1‑93 (MQ=255)
aGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCt < 2:3109838/93‑1 (MQ=255)
aGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCt > 1:219350/1‑93 (MQ=255)
gCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTg < 2:5132716/93‑1 (MQ=255)
accATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTg < 1:5109404/92‑1 (MQ=255)
ccATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTgg < 2:6252497/93‑1 (MQ=255)
ccATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTgg > 2:81236/1‑93 (MQ=255)
ccATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTgg < 2:3054273/93‑1 (MQ=255)
ccATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTgg > 1:2547874/1‑93 (MQ=255)
cATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGt > 2:759662/1‑93 (MQ=255)
cATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGt < 2:6024587/93‑1 (MQ=255)
aTCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGtt > 1:3082229/1‑93 (MQ=255)
tCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTg > 2:1224491/1‑93 (MQ=255)
cacaTGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGCCGCAATCCGCCACCAGCAGGCCGATCTTTCGCTGGCTGa > 2:245827/1‑93 (MQ=255)
cacaTGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGa > 2:2789450/1‑93 (MQ=255)
cacaTGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGa < 2:119829/93‑1 (MQ=255)
acaTGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGaa < 2:2250105/93‑1 (MQ=255)
aTGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGc < 1:1172101/93‑1 (MQ=255)
tGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGcc > 1:5809397/1‑93 (MQ=255)
aaaGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCCTTCGCTGGTTGAAGCCGc > 2:5524090/1‑93 (MQ=255)
aagaagTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCa < 1:550247/93‑1 (MQ=255)
agaagTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAg > 1:2247257/1‑93 (MQ=255)
gaagTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGa < 1:6356628/93‑1 (MQ=255)
gaagTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGa < 2:5658618/93‑1 (MQ=255)
gaagTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGa > 2:5467253/1‑93 (MQ=255)
aagTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGAc > 2:20117/1‑93 (MQ=255)
agTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATTCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACa < 1:753138/93‑1 (MQ=255)
agTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACa > 2:6280409/1‑93 (MQ=255)
|
TACAATGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAAT > NC_000913/3774212‑3774394
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCT > NC_000913/3774218‑3774404
|
GTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAA > SRR4302537.2990765/1‑94 (MQ=60)
GTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAA < SRR4302537.5986231/94‑1 (MQ=60)
TCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAAC < SRR4302537.5810190/94‑1 (MQ=60)
TCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAAA > SRR4302537.3999668/1‑94 (MQ=60)
TCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAAA > SRR4302537.5612456/1‑94 (MQ=60)
CATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAAac > SRR4302537.687440/1‑92 (MQ=60)
CATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAAac > SRR4302537.5654837/1‑92 (MQ=60)
ATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAAacg > SRR4302537.796640/1‑91 (MQ=60)
ATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAAacg < SRR4302537.5845855/94‑4 (MQ=60)
TTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGA > SRR4302537.6224719/1‑94 (MQ=60)
AGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAA < SRR4302537.5735818/94‑1 (MQ=60)
GTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAAT > SRR4302537.1104705/1‑94 (MQ=60)
GTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAAT < SRR4302537.5121881/94‑1 (MQ=60)
GTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAAT < SRR4302537.3885845/94‑1 (MQ=60)
TTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATC < SRR4302537.1589389/94‑1 (MQ=60)
TTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATC < SRR4302537.5393407/94‑1 (MQ=60)
TTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATC > SRR4302537.3609765/1‑94 (MQ=60)
GTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAA > SRR4302537.4729600/1‑94 (MQ=60)
TGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAA > SRR4302537.5673323/1‑94 (MQ=60)
TGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAA > SRR4302537.4978667/1‑94 (MQ=60)
TGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAA < SRR4302537.4416035/94‑1 (MQ=60)
GAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAAC < SRR4302537.1293570/94‑1 (MQ=60)
GAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAAC < SRR4302537.3584847/94‑1 (MQ=60)
GAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAAC > SRR4302537.360118/1‑94 (MQ=60)
GAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAAC < SRR4302537.786620/94‑1 (MQ=60)
GAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAAC > SRR4302537.1514483/1‑94 (MQ=60)
AACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACG > SRR4302537.975399/1‑94 (MQ=60)
AACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACG > SRR4302537.2652995/1‑94 (MQ=60)
ACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAACGAAATCAAACGCC > SRR4302537.3262760/1‑94 (MQ=60)
CAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCC < SRR4302537.5878405/94‑1 (MQ=60)
CAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCC > SRR4302537.6361553/1‑94 (MQ=60)
CAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCC > SRR4302537.4019316/1‑94 (MQ=60)
AAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCT > SRR4302537.2801722/1‑94 (MQ=60)
GCGCCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAG < SRR4302537.6139933/94‑1 (MQ=60)
GCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAG < SRR4302537.2248731/94‑1 (MQ=60)
GCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAG < SRR4302537.12975/94‑1 (MQ=60)
GCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAG < SRR4302537.2207291/94‑1 (MQ=60)
CACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGC > SRR4302537.3684515/1‑94 (MQ=60)
ACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCG < SRR4302537.292429/94‑1 (MQ=60)
CCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGA > SRR4302537.3102422/1‑94 (MQ=60)
CCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGA > SRR4302537.5931013/1‑94 (MQ=60)
CTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGAT > SRR4302537.4078491/1‑94 (MQ=60)
CTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGAT > SRR4302537.861152/1‑94 (MQ=60)
CTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGAT < SRR4302537.5633478/94‑1 (MQ=60)
GGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCG < SRR4302537.1811035/94‑1 (MQ=60)
CGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCT < SRR4302537.5527330/94‑1 (MQ=60)
GCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTG < SRR4302537.1045090/94‑1 (MQ=60)
GCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTG < SRR4302537.3108559/94‑1 (MQ=60)
CGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGG > SRR4302537.1295910/1‑94 (MQ=60)
CGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGA > SRR4302537.5468582/1‑94 (MQ=60)
CATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGAC > SRR4302537.2465992/1‑94 (MQ=60)
CATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGAC < SRR4302537.5361137/94‑1 (MQ=60)
CATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACG > SRR4302537.586922/1‑94 (MQ=60)
ATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACG > SRR4302537.902456/1‑94 (MQ=60)
ATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACG < SRR4302537.557881/94‑1 (MQ=60)
ATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACG > SRR4302537.529769/1‑94 (MQ=60)
ATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACG > SRR4302537.3732701/1‑94 (MQ=60)
TACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGC > SRR4302537.6170223/1‑94 (MQ=60)
ACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCC > SRR4302537.2842938/1‑94 (MQ=60)
TAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCAT > SRR4302537.1105062/1‑94 (MQ=60)
AGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGGCATC > SRR4302537.4644467/1‑94 (MQ=60)
AGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATC > SRR4302537.2307710/1‑94 (MQ=60)
GGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCC < SRR4302537.1530182/94‑1 (MQ=60)
GGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCG < SRR4302537.4076802/94‑1 (MQ=60)
GGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCG > SRR4302537.2508280/1‑94 (MQ=60)
GCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCC > SRR4302537.1079149/1‑94 (MQ=60)
GCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCC > SRR4302537.1918778/1‑94 (MQ=60)
ATAAATTTATTTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACC < SRR4302537.6256881/94‑1 (MQ=60)
TAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCA < SRR4302537.5965192/94‑1 (MQ=60)
TAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCA > SRR4302537.2063995/1‑94 (MQ=60)
TAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCA > SRR4302537.2121723/1‑94 (MQ=60)
AAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAG > SRR4302537.3364413/1‑94 (MQ=60)
TTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAG < SRR4302537.2790492/94‑1 (MQ=60)
TTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAG > SRR4302537.4176674/1‑94 (MQ=60)
TATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGC > SRR4302537.5667546/1‑94 (MQ=60)
ATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCC < SRR4302537.2627759/94‑1 (MQ=60)
ATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCC > SRR4302537.195170/1‑94 (MQ=60)
TCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCG > SRR4302537.4572792/1‑94 (MQ=60)
TCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCG < SRR4302537.674495/94‑1 (MQ=60)
TCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCG < SRR4302537.3597672/94‑1 (MQ=60)
CTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGA > SRR4302537.403774/1‑94 (MQ=60)
TTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGAT > SRR4302537.1134661/1‑94 (MQ=60)
TATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCT > SRR4302537.4304753/1‑94 (MQ=60)
TATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCT > SRR4302537.6295008/1‑94 (MQ=60)
ATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTT < SRR4302537.5224221/94‑1 (MQ=60)
TCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTT < SRR4302537.1457240/94‑1 (MQ=60)
TCAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTT < SRR4302537.6392963/94‑1 (MQ=60)
CAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTC < SRR4302537.8291/94‑1 (MQ=60)
CAGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTC < SRR4302537.4622565/94‑1 (MQ=60)
CAGAAGCCATCACAGGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTC < SRR4302537.1284567/94‑1 (MQ=60)
AGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAACCGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCG < SRR4302537.5475492/94‑1 (MQ=60)
AGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCG > SRR4302537.3740606/1‑94 (MQ=60)
AGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCG < SRR4302537.3250006/94‑1 (MQ=60)
AGAAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCG > SRR4302537.4564825/1‑94 (MQ=60)
AAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCT < SRR4302537.1914646/94‑1 (MQ=60)
AAGCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCT > SRR4302537.220914/1‑94 (MQ=60)
GCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGG < SRR4302537.2209399/94‑1 (MQ=60)
GCCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGG > SRR4302537.2565720/1‑94 (MQ=60)
ACCATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGG < SRR4302537.5144610/94‑1 (MQ=60)
CATCACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTT > SRR4302537.3103695/1‑94 (MQ=60)
CACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAA < SRR4302537.5518990/94‑1 (MQ=60)
ACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGGCACCAGCAGGCCGATCTTTCGCTGGTTGAAG > SRR4302537.3065624/1‑94 (MQ=60)
ACATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGATGAAG > SRR4302537.3606641/1‑94 (MQ=60)
ATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCC > SRR4302537.5849229/1‑94 (MQ=60)
ATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCC < SRR4302537.1180258/94‑1 (MQ=60)
ATGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCC > SRR4302537.2421398/1‑94 (MQ=60)
TGAAAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCG > SRR4302537.340368/1‑94 (MQ=60)
AAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAG > SRR4302537.2263115/1‑94 (MQ=60)
AAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAG < SRR4302537.570060/94‑1 (MQ=60)
AAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAG < SRR4302537.554035/94‑1 (MQ=60)
AAGAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAG < SRR4302537.3995918/94‑1 (MQ=60)
GAAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGAC < SRR4302537.6400014/94‑1 (MQ=60)
aagtcaaAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACA < SRR4302537.5618994/87‑1 (MQ=60)
AAGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACA < SRR4302537.426856/94‑1 (MQ=60)
AGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATTCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAA < SRR4302537.758273/94‑1 (MQ=60)
AGTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAA > SRR4302537.460460/1‑94 (MQ=60)
GTCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAA > SRR4302537.1807141/1‑94 (MQ=60)
TCGAAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAAT < SRR4302537.3067187/94‑1 (MQ=60)
cgaAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATA > SRR4302537.1004251/4‑94 (MQ=60)
caaaaacAAACGAAATCAAACGCCTCAGCCATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATA < SRR4302537.6105462/87‑1 (MQ=60)
gaAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATAT < SRR4302537.4560153/92‑1 (MQ=60)
gaAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATAT < SRR4302537.5881691/92‑1 (MQ=60)
A‑AAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATG < SRR4302537.290181/94‑1 (MQ=60)
A‑AAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATG < SRR4302537.2703748/94‑1 (MQ=60)
AAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGC > SRR4302537.6135358/1‑94 (MQ=60)
AAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGC > SRR4302537.3951970/1‑94 (MQ=60)
AAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCG > SRR4302537.1245564/1‑94 (MQ=60)
AAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCGCCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAG < SRR4302537.5187875/94‑1 (MQ=60)
AAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATTCCGAC > SRR4302537.3529004/1‑94 (MQ=60)
AAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAG > SRR4302537.1672384/1‑94 (MQ=60)
AACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGC > SRR4302537.6231843/1‑94 (MQ=60)
AACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGC < SRR4302537.1820627/94‑1 (MQ=60)
AACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGC < SRR4302537.2921434/94‑1 (MQ=60)
ACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCT < SRR4302537.3694977/94‑1 (MQ=60)
|
GTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCG‑AAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCT > NC_000913/3774218‑3774404
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
