Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
NC_000913 |
3,814,781 |
T→A |
L160Q (CTG→CAG) |
yicC → |
putative alpha helix protein |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NC_000913 | 3,814,781 | 0 | T | A | 100.0%
| 949.3
/ NA
| 266 | L160Q (CTG→CAG) | yicC | putative alpha helix protein |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (142/124); total (142/124) |
Only 100 of 275 total aligned reads displayed.
TTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCTGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGG > NC_000913/3814691‑3814870
|
ttCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAgg > 2:6132057/1‑93 (MQ=255)
ttCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAgg < 2:2924122/93‑1 (MQ=255)
ttCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAgg < 1:3410166/93‑1 (MQ=255)
tctcGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGa > 1:4347284/1‑93 (MQ=255)
tctcGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGa > 1:4311060/1‑93 (MQ=255)
tcGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAg < 1:3769017/93‑1 (MQ=255)
tcGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAg < 1:3696532/93‑1 (MQ=255)
cgcgGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAgg < 1:760949/93‑1 (MQ=255)
cggcgCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCg < 1:1305229/93‑1 (MQ=255)
ggcgCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGt < 1:4714887/93‑1 (MQ=255)
cgcTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCa > 1:1564270/1‑93 (MQ=255)
cgcTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCa < 1:2564514/93‑1 (MQ=255)
gcTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCAc < 2:3891432/93‑1 (MQ=255)
gcTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCAc < 2:5591303/93‑1 (MQ=255)
cTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCAcc > 1:2094344/1‑93 (MQ=255)
tGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCAccg > 1:3814652/1‑93 (MQ=255)
ggATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGGAGGCGTCAccgc > 1:6280429/1‑93 (MQ=255)
ggATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCAccgc > 1:4662145/1‑93 (MQ=255)
ggATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCAccgc < 1:1995321/93‑1 (MQ=255)
ggATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCAccgc > 2:284133/1‑93 (MQ=255)
gATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAATGCGTCAccgcc > 2:3191869/1‑93 (MQ=255)
aTGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCAccgccg > 2:4560186/1‑93 (MQ=255)
tGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGa > 1:6389320/1‑93 (MQ=255)
tGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGa > 1:5676757/1‑93 (MQ=255)
tGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGa > 1:6189368/1‑93 (MQ=255)
ggTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGaa < 1:239211/93‑1 (MQ=255)
tACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGGAGGCGTCACCGCCGAAGt > 2:1862811/1‑93 (MQ=255)
tACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGt < 2:2904639/93‑1 (MQ=255)
aCGCTGGAGGACTTTAGTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTg < 1:4121865/93‑1 (MQ=255)
aCGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTg < 1:6114895/93‑1 (MQ=255)
gCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGt < 1:5709016/93‑1 (MQ=255)
gCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGt < 2:2764963/93‑1 (MQ=255)
gCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGt > 2:1728178/1‑93 (MQ=255)
gCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGt < 1:4194208/93‑1 (MQ=255)
cTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTc > 1:1934076/1‑93 (MQ=255)
tGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCa > 1:901323/1‑93 (MQ=255)
ggACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCaa > 2:5611833/1‑93 (MQ=255)
gacgacTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAATTGGTCaaa < 2:6296804/93‑1 (MQ=255)
gacgacTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCaaa < 2:3709347/93‑1 (MQ=255)
gacgacTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCaaa > 2:5944556/1‑93 (MQ=255)
acgccTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAg < 1:3030233/93‑1 (MQ=255)
acgacTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAg > 2:4973929/1‑93 (MQ=255)
gacTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTc < 1:5267912/93‑1 (MQ=255)
tttATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGc > 1:1336893/1‑93 (MQ=255)
ttATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCt > 1:1807582/1‑93 (MQ=255)
ttGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTccc > 2:4753660/1‑93 (MQ=255)
ttGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTccc > 2:5299185/1‑93 (MQ=255)
ttGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTacc > 1:2358977/1‑93 (MQ=255)
tGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCa < 1:5092970/93‑1 (MQ=255)
tCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCata < 2:2635954/93‑1 (MQ=255)
ccgcgcgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCata < 1:1043084/92‑1 (MQ=255)
cgcgcgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCatat < 1:3290086/93‑1 (MQ=255)
cgcgcgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCatat < 1:1486827/93‑1 (MQ=255)
gcgcgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATg < 1:4749296/93‑1 (MQ=255)
gcgcgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATg < 1:784873/93‑1 (MQ=255)
cgcgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGACGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGc > 2:4061872/1‑93 (MQ=255)
cgcgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGc < 1:6068329/93‑1 (MQ=255)
gcgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGcc > 2:1120463/1‑93 (MQ=255)
gcgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGcc > 2:4264313/1‑93 (MQ=255)
gcgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGcc < 2:4025010/93‑1 (MQ=255)
cgcgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCg < 1:5046911/93‑1 (MQ=255)
cgAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGa < 2:6246390/93‑1 (MQ=255)
gAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGaa > 1:1004529/1‑93 (MQ=255)
aaaCCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGaaa < 1:5653348/93‑1 (MQ=255)
aaaCCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGaaa > 1:3928689/1‑93 (MQ=255)
aCCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATc > 1:585296/1‑93 (MQ=255)
aCCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATc < 2:5500288/93‑1 (MQ=255)
aCCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATc > 2:3096636/1‑93 (MQ=255)
ccGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATcc < 1:2801201/93‑1 (MQ=255)
cGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCt > 1:5989800/1‑93 (MQ=255)
gAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTg > 1:4905793/1‑93 (MQ=255)
aaGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGc > 1:3853001/1‑93 (MQ=255)
ggTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCaa > 2:5671938/1‑93 (MQ=255)
tCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATg < 1:659946/93‑1 (MQ=255)
ggCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCa > 1:6007067/1‑93 (MQ=255)
ggCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCa > 1:4630326/1‑93 (MQ=255)
ggCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTACCACATGCCGGAAATCCTGCAATGGcg > 2:35786/1‑92 (MQ=255)
gCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAg > 1:3486778/1‑93 (MQ=255)
aCTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCg > 2:846595/1‑93 (MQ=255)
cTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGt < 2:5274065/93‑1 (MQ=255)
cTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGt < 1:1352330/93‑1 (MQ=255)
tGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTg > 2:1225850/1‑93 (MQ=255)
tGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTg > 2:5099471/1‑93 (MQ=255)
gAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGa > 2:1202315/1‑93 (MQ=255)
gAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGa > 2:3754210/1‑93 (MQ=255)
aGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCg > 1:1112124/1‑93 (MQ=255)
gCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGt > 1:5160382/1‑93 (MQ=255)
gCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGt > 2:1564153/1‑93 (MQ=255)
cATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTc < 1:5371533/93‑1 (MQ=255)
cATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTc < 2:2315623/93‑1 (MQ=255)
aTTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCt < 2:3846580/93‑1 (MQ=255)
ttGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTg < 2:752084/93‑1 (MQ=255)
tGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTgg > 1:2851095/1‑93 (MQ=255)
tGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTgg < 2:2438909/93‑1 (MQ=255)
gAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTcgcg > 2:2991076/1‑93 (MQ=255)
gcagcGTCATGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGaa < 2:3390219/93‑1 (MQ=255)
gcagcGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGaa > 2:2163855/1‑93 (MQ=255)
gcagcGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGaa < 2:4427464/93‑1 (MQ=255)
agcGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGc > 2:1825510/1‑93 (MQ=255)
cGTCAGCAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATCCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTg < 2:1351734/93‑1 (MQ=255)
|
TTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCTGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGG > NC_000913/3814691‑3814870
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAATTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCTGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGAAGA > NC_000913/3814688‑3814874
|
AAATTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCA > SRR4302537.3934994/1‑94 (MQ=60)
AAATTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCA > SRR4302537.2511268/1‑94 (MQ=60)
AAATTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCA < SRR4302537.4966769/94‑1 (MQ=60)
AAATTCTCGCGGAGCTGGATAGTACGCTGGACCACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTAAAAGCATTGATCGAGCAGCGTCA < SRR4302537.845296/94‑1 (MQ=60)
AATTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAG < SRR4302537.5338971/94‑1 (MQ=60)
ATTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGG > SRR4302537.3805966/1‑94 (MQ=60)
ATTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGG > SRR4302537.3826545/1‑94 (MQ=60)
TTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGA > SRR4302537.4377415/1‑94 (MQ=60)
TTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGA < SRR4302537.3434319/94‑1 (MQ=60)
TTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGA > SRR4302537.3395042/1‑94 (MQ=60)
TTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGA > SRR4302537.4341020/1‑94 (MQ=60)
TCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAA < SRR4302537.1563207/94‑1 (MQ=60)
CTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAG > SRR4302537.3125702/1‑94 (MQ=60)
TCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGG < SRR4302537.3722543/94‑1 (MQ=60)
TCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGG < SRR4302537.3795479/94‑1 (MQ=60)
CGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGC < SRR4302537.766149/94‑1 (MQ=60)
CGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGC < SRR4302537.3201232/94‑1 (MQ=60)
GCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCG < SRR4302537.6312107/94‑1 (MQ=60)
GCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGCCAGGAAGGCG > SRR4302537.5268444/1‑94 (MQ=60)
CGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGT < SRR4302537.5723431/94‑1 (MQ=60)
CGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGT < SRR4302537.1314302/94‑1 (MQ=60)
CGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGT < SRR4302537.1202079/94‑1 (MQ=60)
GGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTC < SRR4302537.4747495/94‑1 (MQ=60)
GCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCA > SRR4302537.1575181/1‑94 (MQ=60)
GCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCA < SRR4302537.2066694/94‑1 (MQ=60)
CGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCAC < SRR4302537.2582483/94‑1 (MQ=60)
CGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCAC > SRR4302537.347763/1‑94 (MQ=60)
GCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACC < SRR4302537.4018927/94‑1 (MQ=60)
GCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACC > SRR4302537.6037211/1‑94 (MQ=60)
GCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACC > SRR4302537.2109114/1‑94 (MQ=60)
CTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGTTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCG > SRR4302537.4221822/1‑94 (MQ=60)
CTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCG > SRR4302537.3841400/1‑94 (MQ=60)
TGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGGAGGCGTCACCGC > SRR4302537.6323506/1‑94 (MQ=60)
TGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGC < SRR4302537.3859396/94‑1 (MQ=60)
TGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGC > SRR4302537.4694368/1‑94 (MQ=60)
GGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCC < SRR4302537.560045/94‑1 (MQ=60)
GGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCC < SRR4302537.2009193/94‑1 (MQ=60)
GGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCC < SRR4302537.1086334/94‑1 (MQ=60)
GGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCC > SRR4302537.5920388/1‑94 (MQ=60)
ATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGA > SRR4302537.5715599/1‑94 (MQ=60)
ATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGA > SRR4302537.6232010/1‑94 (MQ=60)
ATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGA < SRR4302537.37311/94‑1 (MQ=60)
ATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGA > SRR4302537.6432855/1‑94 (MQ=60)
GGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAG < SRR4302537.5947188/94‑1 (MQ=60)
GGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAG < SRR4302537.240901/94‑1 (MQ=60)
TACGCTGGACGACTTTATTGTCGCGCGCGAAGCCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTG < SRR4302537.751495/94‑1 (MQ=60)
ACGCTGGAGGACTTTAGTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGG < SRR4302537.4150640/94‑1 (MQ=60)
ACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGG < SRR4302537.6156914/94‑1 (MQ=60)
ACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGG < SRR4302537.3496805/94‑1 (MQ=60)
CGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGT < SRR4302537.1701143/94‑1 (MQ=60)
GCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTC < SRR4302537.5748084/94‑1 (MQ=60)
GCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTC < SRR4302537.4223502/94‑1 (MQ=60)
GCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTC > SRR4302537.1947526/1‑94 (MQ=60)
CTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCA > SRR4302537.907541/1‑94 (MQ=60)
TGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAA > SRR4302537.2857957/1‑94 (MQ=60)
GGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAA < SRR4302537.5315217/94‑1 (MQ=60)
GGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAA > SRR4302537.1328687/1‑94 (MQ=60)
GGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAA > SRR4302537.1267632/1‑94 (MQ=60)
GACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAG > SRR4302537.4693335/1‑94 (MQ=60)
GACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAG > SRR4302537.865982/1‑94 (MQ=60)
GACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAG < SRR4302537.5071474/94‑1 (MQ=60)
ACGCCTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGT < SRR4302537.3051360/94‑1 (MQ=60)
ACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGT < SRR4302537.4757739/94‑1 (MQ=60)
CGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTC > SRR4302537.2863712/1‑94 (MQ=60)
CGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTC < SRR4302537.212521/94‑1 (MQ=60)
GACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCC < SRR4302537.5304163/94‑1 (MQ=60)
GACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCC > SRR4302537.4480035/1‑94 (MQ=60)
ACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCG < SRR4302537.3846712/94‑1 (MQ=60)
ACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCG < SRR4302537.6077972/94‑1 (MQ=60)
ACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCG > SRR4302537.110239/1‑94 (MQ=60)
CTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGC > SRR4302537.1013238/1‑94 (MQ=60)
CTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGC > SRR4302537.1346206/1‑94 (MQ=60)
CTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGC > SRR4302537.1964744/1‑94 (MQ=60)
TTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCT > SRR4302537.1820194/1‑94 (MQ=60)
TTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTC > SRR4302537.5462589/1‑94 (MQ=60)
TTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTC < SRR4302537.4132274/94‑1 (MQ=60)
TTATTGTCGCGCGCGAAACCGAAGGTCAGGCAATGAAAGCATTGATCGAGCAGCGTCAGGAAGCGGTCACCGCCGAAGCGGTCAAAGTCCGCTC > SRR4302537.2091496/1‑94 (MQ=60)
TATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCC < SRR4302537.196964/94‑1 (MQ=60)
ATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGCAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTACC > SRR4302537.6133990/1‑94 (MQ=60)
ATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCC > SRR4302537.4156615/1‑94 (MQ=60)
ATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTACC > SRR4302537.2375617/1‑94 (MQ=60)
TGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCAT < SRR4302537.5128036/94‑1 (MQ=60)
GTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGGAGTGGTCAAAGTCCGCTCCCATA > SRR4302537.4731789/1‑94 (MQ=60)
TCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATAT < SRR4302537.1808902/94‑1 (MQ=60)
TCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATAT < SRR4302537.1889897/94‑1 (MQ=60)
TCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATAT < SRR4302537.6401410/94‑1 (MQ=60)
CCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATAT < SRR4302537.1050286/94‑1 (MQ=60)
CGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATG < SRR4302537.1497173/94‑1 (MQ=60)
CGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATG < SRR4302537.4332904/94‑1 (MQ=60)
CGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATG < SRR4302537.3313337/94‑1 (MQ=60)
GCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGC < SRR4302537.790261/94‑1 (MQ=60)
GCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGC < SRR4302537.4782104/94‑1 (MQ=60)
GCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGC < SRR4302537.4889821/94‑1 (MQ=60)
CGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCC < SRR4302537.6110018/94‑1 (MQ=60)
CGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGG < SRR4302537.5081668/94‑1 (MQ=60)
CGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGG < SRR4302537.5246046/94‑1 (MQ=60)
CGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGG > SRR4302537.2373861/1‑94 (MQ=60)
CGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAA < SRR4302537.4342530/94‑1 (MQ=60)
CGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAA > SRR4302537.1011462/1‑94 (MQ=60)
CGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAA < SRR4302537.263841/94‑1 (MQ=60)
GAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAA > SRR4302537.4264142/1‑94 (MQ=60)
GAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAA > SRR4302537.3956140/1‑94 (MQ=60)
AAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAAT < SRR4302537.5692036/94‑1 (MQ=60)
AACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATC > SRR4302537.589292/1‑94 (MQ=60)
ACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCC > SRR4302537.4712402/1‑94 (MQ=60)
ACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCC > SRR4302537.6361297/1‑94 (MQ=60)
CCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCT > SRR4302537.6030935/1‑94 (MQ=60)
CCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCT < SRR4302537.2820784/94‑1 (MQ=60)
CCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCT > SRR4302537.573604/1‑94 (MQ=60)
CCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCT < SRR4302537.2565296/94‑1 (MQ=60)
CGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTG > SRR4302537.4939657/1‑94 (MQ=60)
CGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTG > SRR4302537.6153670/1‑94 (MQ=60)
CGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTG > SRR4302537.703818/1‑94 (MQ=60)
GAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGC > SRR4302537.3879978/1‑94 (MQ=60)
AGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAA < SRR4302537.2469628/94‑1 (MQ=60)
GGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAAT < SRR4302537.805537/94‑1 (MQ=60)
GGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAAT < SRR4302537.3418299/94‑1 (MQ=60)
GTCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATG > SRR4302537.1466213/1‑94 (MQ=60)
TCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGG < SRR4302537.664442/94‑1 (MQ=60)
TCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGC > SRR4302537.4979873/1‑94 (MQ=60)
GCAGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGG < SRR4302537.6457240/94‑1 (MQ=60)
AGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCA < SRR4302537.5132779/94‑1 (MQ=60)
AGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCA < SRR4302537.3790064/94‑1 (MQ=60)
AGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCA > SRR4302537.6048339/1‑94 (MQ=60)
AGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCA > SRR4302537.5698878/1‑94 (MQ=60)
AGGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCA > SRR4302537.4662360/1‑94 (MQ=60)
GGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAG > SRR4302537.3511435/1‑94 (MQ=60)
GGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAG < SRR4302537.6224560/94‑1 (MQ=60)
GGCACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAG < SRR4302537.4604996/94‑1 (MQ=60)
CACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCG < SRR4302537.3911470/94‑1 (MQ=60)
ACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGT < SRR4302537.908785/94‑1 (MQ=60)
ACTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGT > SRR4302537.5344724/1‑94 (MQ=60)
CTGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTG < SRR4302537.1361751/94‑1 (MQ=60)
TGAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGA < SRR4302537.2955183/94‑1 (MQ=60)
GAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAG < SRR4302537.5879253/94‑1 (MQ=60)
GAAAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAG > SRR4302537.4685011/1‑94 (MQ=60)
AAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCG > SRR4302537.1119804/1‑94 (MQ=60)
AAGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCG > SRR4302537.1560087/1‑94 (MQ=60)
ATCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGT < SRR4302537.6187149/94‑1 (MQ=60)
AGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGT > SRR4302537.5776557/1‑94 (MQ=60)
AGCATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGT > SRR4302537.5195963/1‑94 (MQ=60)
CATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCT < SRR4302537.5408277/94‑1 (MQ=60)
ATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTG > SRR4302537.4849833/1‑94 (MQ=60)
ATTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTG > SRR4302537.778244/1‑94 (MQ=60)
TTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGG > SRR4302537.2871066/1‑94 (MQ=60)
TTGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGG < SRR4302537.5116511/94‑1 (MQ=60)
TGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGT > SRR4302537.6089803/1‑94 (MQ=60)
TGATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGT > SRR4302537.2775948/1‑94 (MQ=60)
GATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTC > SRR4302537.3525590/1‑94 (MQ=60)
GATCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTC > SRR4302537.2378082/1‑94 (MQ=60)
GATCGAGCAGCGCCAGGAAGGCGTCACCGCCGAAGTGGTAAAAGTCCGCGCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGAGTCTGGTC < SRR4302537.1599123/94‑1 (MQ=60)
TCGAGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGG > SRR4302537.1450419/1‑94 (MQ=60)
AGCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAA > SRR4302537.1349954/1‑94 (MQ=60)
GCAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAG < SRR4302537.5093036/94‑1 (MQ=60)
CAGCGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGC > SRR4302537.1342784/1‑94 (MQ=60)
CGTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGG < SRR4302537.655932/94‑1 (MQ=60)
GTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGA > SRR4302537.4560809/1‑94 (MQ=60)
GTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGA > SRR4302537.1393733/1‑94 (MQ=60)
GTCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGA > SRR4302537.2848699/1‑94 (MQ=60)
TCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGAA > SRR4302537.699661/1‑94 (MQ=60)
TCAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGAA < SRR4302537.1374733/94‑1 (MQ=60)
CAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGgagttagaag > SRR4302537.2078130/1‑84 (MQ=60)
CAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGAAG < SRR4302537.5754305/94‑1 (MQ=60)
CAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGAAG > SRR4302537.5068507/1‑94 (MQ=60)
CAGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGAAG < SRR4302537.5848184/94‑1 (MQ=60)
AGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGAAGA > SRR4302537.2994376/1‑94 (MQ=60)
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AAATTCTCGCGGCGCTGGATGGTACGCTGGACGACTTTATTGTCGCGCGCGAAACCGAAGGTCAGGCACTGAAAGCATTGATCGAGCAGCGTCTGGAAGGCGTCACCGCCGAAGTGGTCAAAGTCCGCTCCCATATGCCGGAAATCCTGCAATGGCAGCGTGAGCGTCTGGTCGCGAAGCTGGAAGA > NC_000913/3814688‑3814874
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Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |