Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,838,716	A→G	G272G (GGT→GGC)	yicM ←	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,838,716	0	A	G	100.0%	894.9 / NA	258	G272G (GGT→GGC)	yicM	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (104/154); total (104/154)

Only 100 of 262 total aligned reads displayed.

CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAA  >  NC_000913/3838626‑3838804

cGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGcc                                                                                        <  1:4126219/93‑1 (MQ=255)

cGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGcc                                                                                        <  2:170764/93‑1 (MQ=255)

cGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGcc                                                                                        <  1:205650/93‑1 (MQ=255)

   cAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCgg                                                                                     >  2:1681503/1‑93 (MQ=255)

    aGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGa                                                                                    <  1:4254562/93‑1 (MQ=255)

    aGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGa                                                                                    >  1:1570636/1‑93 (MQ=255)

      gTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGCTCATCCCTGCCATCACGCCCGGACg                                                                                  >  2:3609278/1‑93 (MQ=255)

      gTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACg                                                                                  >  2:941254/1‑93 (MQ=255)

       ttCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGTGATCATCCCTGCCATCACGCTCGGCCGt                                                                                 >  2:4061160/1‑93 (MQ=255)

       ttCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGt                                                                                 >  2:2234832/1‑93 (MQ=255)

        tCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGtt                                                                                <  1:4517169/93‑1 (MQ=255)

         cATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTg                                                                               <  2:1409319/93‑1 (MQ=255)

         cATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTg                                                                               <  1:5712998/93‑1 (MQ=255)

           tataCACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGta                                                                             >  2:835275/1‑93 (MQ=255)

            ataCACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGtaa                                                                            <  1:2278602/93‑1 (MQ=255)

             tgcacCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGtaat                                                                           <  2:4375212/91‑1 (MQ=255)

             tccgccGGGATAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGtaat                                                                           <  2:4620891/89‑1 (MQ=255)

             taCACCGGGCGAATATACGTGAAGAAAGCAAGCTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGtaat                                                                           <  2:3436683/93‑1 (MQ=255)

                acCGGACGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAg                                                                        <  1:437868/93‑1 (MQ=255)

                 ccGTGCGAATATACGTGAAGAAAGCAAACTGCCGGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGc                                                                       <  2:4138431/93‑1 (MQ=255)

                 ccGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGc                                                                       <  2:1153913/93‑1 (MQ=255)

                 ccGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGc                                                                       <  1:4791985/93‑1 (MQ=255)

                  cGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAATATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCg                                                                      <  2:579433/93‑1 (MQ=255)

                  cGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCg                                                                      <  1:3630067/93‑1 (MQ=255)

                       gAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAg                                                                 >  1:4055149/1‑93 (MQ=255)

                       gAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAg                                                                 >  1:4308589/1‑93 (MQ=255)

                       gAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAg                                                                 <  1:5127578/93‑1 (MQ=255)

                        aaTATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGt                                                                >  1:2614221/1‑93 (MQ=255)

                          tataCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTAt                                                              >  1:819234/1‑93 (MQ=255)

                           ataCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTAtt                                                             <  1:3839094/93‑1 (MQ=255)

                           ataCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTAtt                                                             <  2:3716930/93‑1 (MQ=255)

                            taCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTAttt                                                            >  1:726509/1‑93 (MQ=255)

                            taCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTAttt                                                            >  2:2626167/1‑93 (MQ=255)

                            taCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGACCATCCCTGCCATCACGCCCGGATGTTGTAATAAGCGGAAAGTAttt                                                            <  2:5198044/93‑1 (MQ=255)

                             aCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTAtttt                                                           <  1:619011/93‑1 (MQ=255)

                             aCGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTAtttt                                                           <  1:5689911/93‑1 (MQ=255)

                              cGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTg                                                          <  2:5029012/93‑1 (MQ=255)

                              cGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGCTGTAATAAGCGGAAAGTATTTTg                                                          >  1:188137/1‑93 (MQ=255)

                               gTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGt                                                         <  1:3528016/93‑1 (MQ=255)

                                 gaagaaAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGttt                                                       >  1:4670495/1‑93 (MQ=255)

                                 gaagaaAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGttt                                                       >  2:128390/1‑93 (MQ=255)

                                  aagaaAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTc                                                      >  1:3045376/1‑93 (MQ=255)

                                  aagaaAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGGAATAAGCGGAAAGTATTTTGTTTc                                                      >  1:3568076/1‑93 (MQ=255)

                                   agaaAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCt                                                     <  2:3538019/93‑1 (MQ=255)

                                    gaaAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTg                                                    >  2:6121344/1‑93 (MQ=255)

                                    gaaAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTg                                                    <  1:2720639/93‑1 (MQ=255)

                                     aaaGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGa                                                   <  1:5639608/93‑1 (MQ=255)

                                     aaaGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGa                                                   <  2:4892643/93‑1 (MQ=255)

                                     aaaGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGa                                                   <  1:5924685/93‑1 (MQ=255)

                                      aaGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGAt                                                  <  2:1763165/93‑1 (MQ=255)

                                       aGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATg                                                 >  2:3308359/1‑93 (MQ=255)

                                         cAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCg                                               <  2:5491001/93‑1 (MQ=255)

                                          aaaCTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGa                                              >  2:686668/1‑93 (MQ=255)

                                           aaCTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGCTGCGAg                                             >  2:4088342/1‑93 (MQ=255)

                                           aaCTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAg                                             <  1:5391718/93‑1 (MQ=255)

                                            aCTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAgg                                            >  1:5054533/1‑93 (MQ=255)

                                             cTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAggg                                           <  2:2307228/93‑1 (MQ=255)

                                              tGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGt                                          <  1:2334859/93‑1 (MQ=255)

                                              tGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGt                                          >  1:3980402/1‑93 (MQ=255)

                                              tGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGt                                          >  2:38534/1‑93 (MQ=255)

                                              tGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGt                                          >  1:2963671/1‑93 (MQ=255)

                                               gCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGtt                                         <  2:3153244/93‑1 (MQ=255)

                                                cccGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTc                                        >  1:3964332/1‑93 (MQ=255)

                                                cccGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTc                                        <  2:1913292/93‑1 (MQ=255)

                                                 ccGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCg                                       >  2:5334798/1‑93 (MQ=255)

                                                  cGGCGAAAGACATGAAGATGGCGATCATACCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGc                                      >  1:6090530/1‑93 (MQ=255)

                                                    gCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCt                                    >  1:3101333/1‑93 (MQ=255)

                                                     cGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTg                                   <  2:249010/93‑1 (MQ=255)

                                                     cGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTg                                   <  1:3076673/93‑1 (MQ=255)

                                                     cGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTg                                   <  1:5172509/93‑1 (MQ=255)

                                                      gAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTgg                                  >  2:5103597/1‑93 (MQ=255)

                                                        aaGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCa                                >  2:2148583/1‑93 (MQ=255)

                                                         aGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAg                               <  1:3749150/93‑1 (MQ=255)

                                                         aGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAg                               <  1:6010941/93‑1 (MQ=255)

                                                           aCATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTg                             <  2:5685583/93‑1 (MQ=255)

                                                            cATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGa                            <  2:218000/93‑1 (MQ=255)

                                                            cATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGa                            <  2:6271204/93‑1 (MQ=255)

                                                             aTGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGaa                           <  1:93476/93‑1 (MQ=255)

                                                              tGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAg                          <  2:2826701/93‑1 (MQ=255)

                                                               gAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAgg                         >  2:3087074/1‑93 (MQ=255)

                                                                  gATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCaa                      <  1:5493553/93‑1 (MQ=255)

                                                                   aTGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAAt                     <  1:4488043/93‑1 (MQ=255)

                                                                   aTGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAAt                     >  1:3440073/1‑93 (MQ=255)

                                                                      gCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGAt                  <  2:4007637/93‑1 (MQ=255)

                                                                        gATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGAttt                <  1:5857764/93‑1 (MQ=255)

                                                                        gATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGAttt                >  2:1371017/1‑93 (MQ=255)

                                                                        gATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGAttt                >  1:6426976/1‑93 (MQ=255)

                                                                          tcatcCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGa              <  1:4901164/93‑1 (MQ=255)

                                                                          tcatcCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGa              >  2:1070383/1‑93 (MQ=255)

                                                                          tcatcCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGa              >  2:1036645/1‑93 (MQ=255)

                                                                               ccTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATc         >  1:1256772/1‑93 (MQ=255)

                                                                               ccTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATc         >  1:4429088/1‑93 (MQ=255)

                                                                                cTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATcc        <  2:298349/93‑1 (MQ=255)

                                                                                 tGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCa       >  1:1013491/1‑93 (MQ=255)

                                                                                 tGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCa       <  2:6115685/93‑1 (MQ=255)

                                                                                 tGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCa       <  2:4514843/93‑1 (MQ=255)

                                                                                    cATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGaa    <  1:1681503/93‑1 (MQ=255)

                                                                                    cATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGaa    <  1:2105472/93‑1 (MQ=255)

                                                                                    cATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAACGATTTGATAATCCAGaa    >  1:1088882/1‑93 (MQ=255)

                                                                                     aTCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGaaa   >  1:2034742/1‑93 (MQ=255)

CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAA  >  NC_000913/3838626‑3838804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAATACAC  >  NC_000913/3838624‑3838809

CCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGC                                                                                              <  SRR4302537.4353457/94‑1 (MQ=60)

  CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCC                                                                                            <  SRR4302537.3097683/94‑1 (MQ=60)

  CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCC                                                                                            <  SRR4302537.585826/94‑1 (MQ=60)

  CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCC                                                                                            <  SRR4302537.4600305/94‑1 (MQ=60)

  CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCC                                                                                            <  SRR4302537.207123/94‑1 (MQ=60)

  CGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCC                                                                                            <  SRR4302537.4155020/94‑1 (MQ=60)

     CAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGA                                                                                         >  SRR4302537.1581594/1‑94 (MQ=60)

      AGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGAC                                                                                        <  SRR4302537.4284133/94‑1 (MQ=60)

       GGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACG                                                                                       <  SRR4302537.2049601/94‑1 (MQ=60)

        GTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGT                                                                                      >  SRR4302537.308473/1‑94 (MQ=60)

         TTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTT                                                                                     >  SRR4302537.5736222/1‑94 (MQ=60)

         TTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTT                                                                                     <  SRR4302537.4108577/94‑1 (MQ=60)

          TCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTG                                                                                    <  SRR4302537.5893746/94‑1 (MQ=60)

          TCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTG                                                                                    <  SRR4302537.4548418/94‑1 (MQ=60)

           CATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGT                                                                                   <  SRR4302537.5752098/94‑1 (MQ=60)

            ATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTA                                                                                  <  SRR4302537.5186864/94‑1 (MQ=60)

             TATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAA                                                                                 <  SRR4302537.2268712/94‑1 (MQ=60)

              ATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAAT                                                                                <  SRR4302537.2294688/94‑1 (MQ=60)

              ATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAAT                                                                                <  SRR4302537.3904722/94‑1 (MQ=60)

               TACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATA                                                                               >  SRR4302537.5359881/1‑94 (MQ=60)

                ACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAA                                                                              <  SRR4302537.4355202/94‑1 (MQ=60)

                 CACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAG                                                                             <  SRR4302537.4889523/94‑1 (MQ=60)

                 CACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAG                                                                             <  SRR4302537.5694182/94‑1 (MQ=60)

                  ACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGC                                                                            <  SRR4302537.4466212/94‑1 (MQ=60)

                  ACCGGACGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGC                                                                            <  SRR4302537.440919/94‑1 (MQ=60)

                   CCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCG                                                                           <  SRR4302537.4825060/94‑1 (MQ=60)

                    CGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGG                                                                          <  SRR4302537.3655646/94‑1 (MQ=60)

                    CGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGG                                                                          <  SRR4302537.5713961/94‑1 (MQ=60)

                        CGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAG                                                                      >  SRR4302537.4083492/1‑94 (MQ=60)

                        CGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAG                                                                      >  SRR4302537.4338536/1‑94 (MQ=60)

                         GAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGT                                                                     <  SRR4302537.5162914/94‑1 (MQ=60)

                         GAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGT                                                                     >  SRR4302537.2632507/1‑94 (MQ=60)

                         GAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGT                                                                     >  SRR4302537.2337793/1‑94 (MQ=60)

                         GAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGT                                                                     <  SRR4302537.81721/94‑1 (MQ=60)

                           ATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTAT                                                                   <  SRR4302537.2657569/94‑1 (MQ=60)

                           ATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTAT                                                                   >  SRR4302537.824861/1‑94 (MQ=60)

                           ATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTAT                                                                   >  SRR4302537.2915997/1‑94 (MQ=60)

                             ATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTT                                                                 <  SRR4302537.3865988/94‑1 (MQ=60)

                             ATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTT                                                                 >  SRR4302537.5187364/1‑94 (MQ=60)

                             ATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTT                                                                 >  SRR4302537.731467/1‑94 (MQ=60)

                              TACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTT                                                                >  SRR4302537.4436274/1‑94 (MQ=60)

                               ACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTG                                                               <  SRR4302537.5728828/94‑1 (MQ=60)

                               ACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTG                                                               <  SRR4302537.2056138/94‑1 (MQ=60)

                               ACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTG                                                               <  SRR4302537.623226/94‑1 (MQ=60)

                               ACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGCTGTAATAAGCGGAAAGTATTTTG                                                               >  SRR4302537.189471/1‑94 (MQ=60)

                                CGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGT                                                              >  SRR4302537.3526505/1‑94 (MQ=60)

                                CGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGT                                                              <  SRR4302537.872973/94‑1 (MQ=60)

                                CGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAACCGGAAAGTATTTTGT                                                              >  SRR4302537.4724798/1‑94 (MQ=60)

                                 GTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTT                                                             <  SRR4302537.3552966/94‑1 (MQ=60)

                                 GTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTT                                                             >  SRR4302537.1635219/1‑94 (MQ=60)

                                 GTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTT                                                             <  SRR4302537.862932/94‑1 (MQ=60)

                                  TGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTT                                                            <  SRR4302537.4222474/94‑1 (MQ=60)

                                  TGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTT                                                            >  SRR4302537.4702809/1‑94 (MQ=60)

                                   GAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTC                                                           >  SRR4302537.3066589/1‑94 (MQ=60)

                                   GAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTC                                                           >  SRR4302537.6460238/1‑94 (MQ=60)

                                   GAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTC                                                           <  SRR4302537.3716392/94‑1 (MQ=60)

                                   GAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGGAATAAGCGGAAAGTATTTTGTTTC                                                           >  SRR4302537.3593237/1‑94 (MQ=60)

                                     AGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTG                                                         <  SRR4302537.3195985/94‑1 (MQ=60)

                                      GAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGA                                                        <  SRR4302537.2739637/94‑1 (MQ=60)

                                      GAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGA                                                        <  SRR4302537.1645451/94‑1 (MQ=60)

                                      GAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGA                                                        >  SRR4302537.472493/1‑94 (MQ=60)

                                       AAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGAT                                                       <  SRR4302537.5965342/94‑1 (MQ=60)

                                       AAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGAT                                                       <  SRR4302537.5678203/94‑1 (MQ=60)

                                        AAGCAAACTGCCCGGCGAAAGACATGAAGATGTCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATG                                                      <  SRR4302537.5649474/94‑1 (MQ=60)

                                        AAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATG                                                      <  SRR4302537.3765346/94‑1 (MQ=60)

                                        AAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATG                                                      <  SRR4302537.547468/94‑1 (MQ=60)

                                        AAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATG                                                      <  SRR4302537.1950768/94‑1 (MQ=60)

                                        AAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATG                                                      <  SRR4302537.5641674/94‑1 (MQ=60)

                                          GCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCG                                                    <  SRR4302537.665509/94‑1 (MQ=60)

                                           CAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGA                                                   >  SRR4302537.1802534/1‑94 (MQ=60)

                                           CAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATACCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGA                                                   >  SRR4302537.4301559/1‑94 (MQ=60)

                                             AACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGG                                                 <  SRR4302537.2087144/94‑1 (MQ=60)

                                             AACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGG                                                 <  SRR4302537.3635816/94‑1 (MQ=60)

                                             AACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGG                                                 >  SRR4302537.5089329/1‑94 (MQ=60)

                                             AACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGG                                                 <  SRR4302537.3006975/94‑1 (MQ=60)

                                             AACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGG                                                 <  SRR4302537.5428548/94‑1 (MQ=60)

                                               CTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGT                                               >  SRR4302537.4008260/1‑94 (MQ=60)

                                               CTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGT                                               >  SRR4302537.1554900/1‑94 (MQ=60)

                                               CTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGT                                               >  SRR4302537.2984471/1‑94 (MQ=60)

                                               CTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCCGATGCGAGGGT                                               <  SRR4302537.5131280/94‑1 (MQ=60)

                                                TGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTT                                              <  SRR4302537.2351316/94‑1 (MQ=60)

                                                TGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTT                                              >  SRR4302537.3592759/1‑94 (MQ=60)

                                                 GCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTC                                             >  SRR4302537.3992060/1‑94 (MQ=60)

                                                  CCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCC                                            >  SRR4302537.5293659/1‑94 (MQ=60)

                                                   CCGGCGAAAGACATGAAGATGGCGATCATACCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGC                                           >  SRR4302537.6132375/1‑94 (MQ=60)

                                                     GGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCT                                         <  SRR4302537.4443732/94‑1 (MQ=60)

                                                     GGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCT                                         >  SRR4302537.3122981/1‑94 (MQ=60)

                                                      GCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTAATGCGAGGGTTCGCCTG                                        <  SRR4302537.4494883/94‑1 (MQ=60)

                                                       CGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGG                                       <  SRR4302537.5208116/94‑1 (MQ=60)

                                                       CGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGG                                       <  SRR4302537.3508775/94‑1 (MQ=60)

                                                       CGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGG                                       <  SRR4302537.3098104/94‑1 (MQ=60)

                                                       CGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGG                                       >  SRR4302537.1754267/1‑94 (MQ=60)

                                                       CGAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGG                                       >  SRR4302537.5941734/1‑94 (MQ=60)

                                                        GAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGC                                      <  SRR4302537.3433002/94‑1 (MQ=60)

                                                        GAAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGC                                      >  SRR4302537.3909813/1‑94 (MQ=60)

                                                         AAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCA                                     <  SRR4302537.4569280/94‑1 (MQ=60)

                                                         AAAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCA                                     >  SRR4302537.3642429/1‑94 (MQ=60)

                                                          AAGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAG                                    <  SRR4302537.6008795/94‑1 (MQ=60)

                                                           AGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGT                                   <  SRR4302537.6052241/94‑1 (MQ=60)

                                                           AGACATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGT                                   <  SRR4302537.3775479/94‑1 (MQ=60)

                                                              CATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAA                                <  SRR4302537.4956919/94‑1 (MQ=60)

                                                               ATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAG                               <  SRR4302537.94155/94‑1 (MQ=60)

                                                               ATGAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAG                               <  SRR4302537.4075548/94‑1 (MQ=60)

                                                                 GAAGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGC                             <  SRR4302537.1155080/94‑1 (MQ=60)

                                                                   AGATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAA                           >  SRR4302537.6219337/1‑94 (MQ=60)

                                                                    GATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAAT                          <  SRR4302537.5531059/94‑1 (MQ=60)

                                                                    GATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAAT                          <  SRR4302537.385636/94‑1 (MQ=60)

                                                                    GATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAAT                          >  SRR4302537.3464419/1‑94 (MQ=60)

                                                                     ATGGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATG                         <  SRR4302537.4519089/94‑1 (MQ=60)

                                                                       GGCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGAT                       <  SRR4302537.1091597/94‑1 (MQ=60)

                                                                        GCGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATT                      <  SRR4302537.4529784/94‑1 (MQ=60)

                                                                         CGATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTT                     >  SRR4302537.6470650/1‑94 (MQ=60)

                                                                          GATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTG                    <  SRR4302537.4998989/94‑1 (MQ=60)

                                                                          GATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTG                    <  SRR4302537.1125775/94‑1 (MQ=60)

                                                                          GATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTG                    >  SRR4302537.22459/1‑94 (MQ=60)

                                                                          GATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTG                    >  SRR4302537.4307096/1‑94 (MQ=60)

                                                                          GATCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTG                    <  SRR4302537.5897942/94‑1 (MQ=60)

                                                                            TCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGAT                  <  SRR4302537.4934996/94‑1 (MQ=60)

                                                                            TCATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGAT                  <  SRR4302537.4055033/94‑1 (MQ=60)

                                                                             CATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATA                 >  SRR4302537.2313160/1‑94 (MQ=60)

                                                                              ATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAA                >  SRR4302537.5990536/1‑94 (MQ=60)

                                                                              ATCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAA                >  SRR4302537.6085566/1‑94 (MQ=60)

                                                                               TCCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAAT               <  SRR4302537.6399261/94‑1 (MQ=60)

                                                                                CCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATC              >  SRR4302537.1265517/1‑94 (MQ=60)

                                                                                CCCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATC              >  SRR4302537.4459675/1‑94 (MQ=60)

                                                                                 CCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCC             <  SRR4302537.251793/94‑1 (MQ=60)

                                                                                 CCTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCC             >  SRR4302537.6083356/1‑94 (MQ=60)

                                                                                  CTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCA            >  SRR4302537.2733510/1‑94 (MQ=60)

                                                                                  CTGCCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCA            >  SRR4302537.1020475/1‑94 (MQ=60)

                                                                                     CCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAA         >  SRR4302537.312117/1‑94 (MQ=60)

                                                                                     CCATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAACGATTTGATAATCCAGAA         >  SRR4302537.1096405/1‑94 (MQ=60)

                                                                                      CATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAA        <  SRR4302537.2120313/94‑1 (MQ=60)

                                                                                      CATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAA        >  SRR4302537.2048925/1‑94 (MQ=60)

                                                                                      CATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAA        >  SRR4302537.6479336/1‑94 (MQ=60)

                                                                                      CATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAA        <  SRR4302537.1693271/94‑1 (MQ=60)

                                                                                      CATCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAA        <  SRR4302537.3999367/94‑1 (MQ=60)

                                                                                        TCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAAT      <  SRR4302537.2800152/94‑1 (MQ=60)

                                                                                        TCACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAAT      <  SRR4302537.4095485/94‑1 (MQ=60)

                                                                                          ACGCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAATAC    <  SRR4302537.1972022/94‑1 (MQ=60)

                                                                                            GCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAATACAC  >  SRR4302537.1939392/1‑94 (MQ=60)

                                                                                            GCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAATACAC  <  SRR4302537.3897909/94‑1 (MQ=60)

                                                                                            GCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAATACAC  >  SRR4302537.4605935/1‑94 (MQ=60)

                                                                                            GCCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAATACAC  <  SRR4302537.4868584/94‑1 (MQ=60)

CCCGCCAGGTTCATATACACCGGGCGAATATACGTGAAGAAAGCAAACTGCCCGGCGAAAGACATGAAGATGGCGATCATCCCTGCCATCACACCCGGACGTTGTAATAAGCGGAAAGTATTTTGTTTCTGATGCGAGGGTTCGCCTGGCAGTGAAGGCAATGATTTGATAATCCAGAAAATACAC  >  NC_000913/3838624‑3838809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`