Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,850,157	T→C	G85G (GGA→GGG)	ilvB ←	acetolactate synthase I large subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,850,157	0	T	C	100.0%	706.1 / NA	209	G85G (GGA→GGG)	ilvB	acetolactate synthase I large subunit
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (117/92); total (117/92)

Only 100 of 223 total aligned reads displayed.

CGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGTCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAG  >  NC_000913/3850067‑3850246

cGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGccc                                                                                         <  2:6382121/93‑1 (MQ=255)

cGAGGCGGGAACCTGAACAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGAATCGGCAATGGCGGTCACCAGGTTAGGCGCCCCCGGccc                                                                                         >  1:4744017/1‑93 (MQ=255)

 gAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCg                                                                                        >  1:804113/1‑93 (MQ=255)

 gAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCg                                                                                        <  2:6253736/93‑1 (MQ=255)

 gAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGGCACCAGGTTAGTCGCACCCGGCCCg                                                                                        >  1:3272016/1‑93 (MQ=255)

  aGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGc                                                                                       <  1:2080661/93‑1 (MQ=255)

  aGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGc                                                                                       >  2:538757/1‑93 (MQ=255)

   ggCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCt                                                                                      >  1:2601950/1‑93 (MQ=255)

    gCGGGAACCTGACCAGGGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCGCGCTa                                                                                     >  1:5262719/1‑93 (MQ=255)

     cGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTAc                                                                                    <  1:5049182/93‑1 (MQ=255)

     cGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTAc                                                                                    <  2:5006108/93‑1 (MQ=255)

      gggAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACa                                                                                   >  2:5232944/1‑93 (MQ=255)

      gggAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACa                                                                                   <  1:4776274/93‑1 (MQ=255)

      gggAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACa                                                                                   >  1:1401816/1‑93 (MQ=255)

      gggAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACa                                                                                   <  1:4334606/93‑1 (MQ=255)

       ggAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAg                                                                                  <  1:3874067/93‑1 (MQ=255)

        gAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAgg                                                                                 >  2:2218671/1‑93 (MQ=255)

         aaCCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGGTAGTCGCACCCGGCCCGCTACAGGc                                                                                >  2:1173666/1‑93 (MQ=255)

          aCCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGcc                                                                               >  1:2039578/1‑93 (MQ=255)

          aCCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGcc                                                                               >  2:3454678/1‑93 (MQ=255)

            cTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGTCCAt                                                                             <  1:3761388/93‑1 (MQ=255)

             tGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATa                                                                            <  1:5649314/93‑1 (MQ=255)

               aCCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACa                                                                          <  2:2346761/93‑1 (MQ=255)

               aCCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACa                                                                          >  1:6428926/1‑93 (MQ=255)

               aCCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACa                                                                          >  2:6173293/1‑93 (MQ=255)

               aCCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGAGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACa                                                                          <  1:3452666/93‑1 (MQ=255)

                ccAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAg                                                                         >  1:1357817/1‑93 (MQ=255)

                ccAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAg                                                                         >  2:2810550/1‑93 (MQ=255)

                ccAGTGATGCAAATCAGCGGGATGGAGTCCAGACGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATAccg                                                                         >  1:996717/1‑91 (MQ=255)

                 cAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGa                                                                        <  2:6142445/93‑1 (MQ=255)

                 cAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGa                                                                        >  2:1647347/1‑93 (MQ=255)

                 cAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGa                                                                        <  1:5301603/93‑1 (MQ=255)

                  aGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAc                                                                       <  2:5570950/93‑1 (MQ=255)

                  aGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAc                                                                       >  2:4518781/1‑93 (MQ=255)

                   gTGATGCAAATCAGCGGGATGGAGTCGAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCCGCCCGCTACAGGCCATACAGAcc                                                                      >  1:278145/1‑93 (MQ=255)

                   gTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAcc                                                                      >  1:4058153/1‑93 (MQ=255)

                   gTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAcc                                                                      <  1:4360046/93‑1 (MQ=255)

                   gTGATGCAAATCAGCGGGATGGAGTACAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAcc                                                                      <  1:3699993/93‑1 (MQ=255)

                     gATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAccgc                                                                    >  2:3947429/1‑93 (MQ=255)

                     gATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAccgc                                                                    <  1:580717/93‑1 (MQ=255)

                     gATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAccgc                                                                    >  1:603957/1‑93 (MQ=255)

                      aTGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAccgcc                                                                   >  2:2612193/1‑93 (MQ=255)

                      aTGCAAAGCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAccgcc                                                                   <  1:1721576/93‑1 (MQ=255)

                        gCAAACCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCgg                                                                 <  2:5131676/93‑1 (MQ=255)

                          aaaTCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGtt                                                               <  2:66791/93‑1 (MQ=255)

                          aaaTCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGtt                                                               <  2:2088166/93‑1 (MQ=255)

                          aaaTCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGtt                                                               >  2:3076308/1‑93 (MQ=255)

                           aaTCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGttt                                                              <  1:6205763/93‑1 (MQ=255)

                           aaTCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGttt                                                              <  1:4482444/93‑1 (MQ=255)

                            aTCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGACCCGCTACAGGGCATACAGACCGCCGGTTTa                                                             >  1:5029973/1‑93 (MQ=255)

                             tCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTAc                                                            >  1:145207/1‑93 (MQ=255)

                               aGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCg                                                          <  1:1756270/93‑1 (MQ=255)

                               aGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCg                                                          >  1:5133046/1‑93 (MQ=255)

                                gCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGt                                                         <  2:3207160/93‑1 (MQ=255)

                                   ggATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCgg                                                      >  1:3391568/1‑93 (MQ=255)

                                    gATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGt                                                     <  2:6460914/93‑1 (MQ=255)

                                     aTGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTg                                                    >  2:1242024/1‑93 (MQ=255)

                                        gAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTgcgc                                                 <  1:3102739/93‑1 (MQ=255)

                                        gAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTgcgc                                                 <  1:5420341/93‑1 (MQ=255)

                                        gAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTgcgc                                                 <  2:4466115/93‑1 (MQ=255)

                                             cAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCAt                                            >  1:5678138/1‑93 (MQ=255)

                                             cAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCAt                                            >  2:1739553/1‑93 (MQ=255)

                                               gCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTc                                          >  2:1766008/1‑93 (MQ=255)

                                                  gcgcATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCt                                       <  1:2544942/93‑1 (MQ=255)

                                                   cgcATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTg                                      <  2:4851484/93‑1 (MQ=255)

                                                    gcATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGa                                     >  2:6037539/1‑93 (MQ=255)

                                                    gcATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGa                                     >  2:3389231/1‑93 (MQ=255)

                                                    gcATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGa                                     <  1:2187800/93‑1 (MQ=255)

                                                    gcATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGa                                     >  1:2461801/1‑93 (MQ=255)

                                                      aTCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGc                                   <  2:3815232/93‑1 (MQ=255)

                                                      aTCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGc                                   >  1:1186290/1‑93 (MQ=255)

                                                       tCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCg                                  >  1:4236946/1‑93 (MQ=255)

                                                       tCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCg                                  >  1:2337736/1‑93 (MQ=255)

                                                           cAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATaa                              >  2:4959984/1‑93 (MQ=255)

                                                            aaTGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATaaa                             <  1:596797/93‑1 (MQ=255)

                                                             aTGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAg                            <  1:3121912/93‑1 (MQ=255)

                                                             aTGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAg                            <  2:5078019/93‑1 (MQ=255)

                                                               ggCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAgac                          >  1:6443871/1‑91 (MQ=255)

                                                                gCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGccc                         >  1:2747765/1‑93 (MQ=255)

                                                                gCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGccc                         <  2:5723872/93‑1 (MQ=255)

                                                                       ccAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCt                  <  2:406904/93‑1 (MQ=255)

                                                                       ccAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCt                  <  1:6264984/93‑1 (MQ=255)

                                                                        cAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTg                 >  2:768099/1‑93 (MQ=255)

                                                                        cAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTg                 >  2:4673485/1‑93 (MQ=255)

                                                                        cAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTg                 >  2:266650/1‑93 (MQ=255)

                                                                         aGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGt                >  1:1040547/1‑93 (MQ=255)

                                                                           gTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTc              >  1:546665/1‑93 (MQ=255)

                                                                           gTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTc              >  1:6138962/1‑93 (MQ=255)

                                                                            ttAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCa             <  2:4555523/93‑1 (MQ=255)

                                                                            ttAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCa             >  1:5579440/1‑93 (MQ=255)

                                                                            ttAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCa             <  2:4200637/93‑1 (MQ=255)

                                                                               gTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGa          >  2:1576093/1‑93 (MQ=255)

                                                                                 cGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACg        >  1:6289945/1‑93 (MQ=255)

                                                                                  gCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGCTCATGACgg       >  1:2258917/1‑93 (MQ=255)

                                                                                  ccACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACgg       <  2:1353891/92‑1 (MQ=255)

                                                                                    aCCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGc     >  1:2160425/1‑93 (MQ=255)

                                                                                     cccGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGcc    <  1:75206/93‑1 (MQ=255)

                                                                                      ccGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCa   <  1:5888112/93‑1 (MQ=255)

                                                                                      ccGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCa   <  2:4318409/93‑1 (MQ=255)

                                                                                       cGGCCCGCTACAGGCCATACAGACCGCCGCTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAg  <  2:4196509/93‑1 (MQ=255)

CGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGTCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAG  >  NC_000913/3850067‑3850246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGTCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATA  >  NC_000913/3850065‑3850250

ATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCC                                                                                              >  SRR4302537.4413840/1‑94 (MQ=60)

 TCGAGGCGGGAACCTGAACAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGAATCGGCAATGGCGGTCACCAGGTTAGGCGCCCCCGGCCC                                                                                             >  SRR4302537.4776797/1‑94 (MQ=60)

  CGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCG                                                                                            >  SRR4302537.809633/1‑94 (MQ=60)

  CGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGGCACCAGGTTAGTCGCACCCGGCCCG                                                                                            >  SRR4302537.3295111/1‑94 (MQ=60)

    AGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCT                                                                                          >  SRR4302537.2620141/1‑94 (MQ=60)

    AGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCT                                                                                          <  SRR4302537.2095315/94‑1 (MQ=60)

     GGCGGGAACCTGACCAGGGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCGCGCTA                                                                                         >  SRR4302537.5298928/1‑94 (MQ=60)

       CGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACA                                                                                       <  SRR4302537.5083946/94‑1 (MQ=60)

       CGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACA                                                                                       >  SRR4302537.1411583/1‑94 (MQ=60)

       CGGGAACCTGACCAGGGATGCAAATCAGCGGTATGGAGTCCGGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACA                                                                                       <  SRR4302537.1650825/94‑1 (MQ=60)

        GGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAG                                                                                      >  SRR4302537.5086711/1‑94 (MQ=60)

        GGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAG                                                                                      <  SRR4302537.4364710/94‑1 (MQ=60)

        GGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAG                                                                                      >  SRR4302537.4787698/1‑94 (MQ=60)

        GGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAG                                                                                      <  SRR4302537.4809248/94‑1 (MQ=60)

         GGAACCTTACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGG                                                                                     >  SRR4302537.557854/1‑94 (MQ=60)

         GGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGG                                                                                     <  SRR4302537.3901168/94‑1 (MQ=60)

         GGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGG                                                                                     <  SRR4302537.3726058/94‑1 (MQ=60)

           AACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCC                                                                                   >  SRR4302537.2053809/1‑94 (MQ=60)

              CTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGTCCATA                                                                                <  SRR4302537.3787797/94‑1 (MQ=60)

               TGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATAC                                                                               >  SRR4302537.348388/1‑94 (MQ=60)

               TGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATAC                                                                               <  SRR4302537.5687978/94‑1 (MQ=60)

               TGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATAC                                                                               <  SRR4302537.6329808/94‑1 (MQ=60)

               TGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATAC                                                                               >  SRR4302537.1739644/1‑94 (MQ=60)

               TGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATAC                                                                               <  SRR4302537.211128/94‑1 (MQ=60)

                GACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACA                                                                              >  SRR4302537.6472607/1‑94 (MQ=60)

                 ACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAG                                                                             >  SRR4302537.1367271/1‑94 (MQ=60)

                 ACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGAGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAG                                                                             <  SRR4302537.3477083/94‑1 (MQ=60)

                 ACCAGTGATGCAAATCAGCGGGATGGAGTCCAGACGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACCG                                                                             >  SRR4302537.1003599/1‑94 (MQ=60)

                  CCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGA                                                                            >  SRR4302537.3815162/1‑94 (MQ=60)

                  CCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGA                                                                            >  SRR4302537.4405028/1‑94 (MQ=60)

                   CAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAC                                                                           >  SRR4302537.745531/1‑94 (MQ=60)

                   CAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAC                                                                           <  SRR4302537.5338044/94‑1 (MQ=60)

                   CAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGAC                                                                           >  SRR4302537.2173026/1‑94 (MQ=60)

                    AGTGATGCAAATCAGCGGGATGGAGTCGAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCCGCCCGCTACAGGCCATACAGACC                                                                          >  SRR4302537.280087/1‑94 (MQ=60)

                    AGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACC                                                                          <  SRR4302537.2309506/94‑1 (MQ=60)

                    AGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACC                                                                          <  SRR4302537.56941/94‑1 (MQ=60)

                    AGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACC                                                                          >  SRR4302537.4086510/1‑94 (MQ=60)

                     GTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCG                                                                         <  SRR4302537.4390216/94‑1 (MQ=60)

                     GTGATGCAAATCAGCGGGATGGAGTACAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCG                                                                         <  SRR4302537.3726021/94‑1 (MQ=60)

                      TGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGC                                                                        >  SRR4302537.608087/1‑94 (MQ=60)

                       GATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCC                                                                       <  SRR4302537.584696/94‑1 (MQ=60)

                       GATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCC                                                                       >  SRR4302537.5359044/1‑94 (MQ=60)

                       GATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCC                                                                       <  SRR4302537.2061706/94‑1 (MQ=60)

                        ATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCG                                                                      >  SRR4302537.1674859/1‑94 (MQ=60)

                        ATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCG                                                                      <  SRR4302537.5043713/94‑1 (MQ=60)

                        ATGCAAAGCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCG                                                                      <  SRR4302537.1733607/94‑1 (MQ=60)

                           CAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTT                                                                   >  SRR4302537.5754997/1‑94 (MQ=60)

                            AAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTT                                                                  <  SRR4302537.467300/94‑1 (MQ=60)

                             AATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTA                                                                 <  SRR4302537.6248528/94‑1 (MQ=60)

                             AATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTA                                                                 <  SRR4302537.1367982/94‑1 (MQ=60)

                             AATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTA                                                                 <  SRR4302537.4513451/94‑1 (MQ=60)

                             AATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTA                                                                 <  SRR4302537.5863219/94‑1 (MQ=60)

                             AATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGACCCGCTACAGGGCATACAGACCGCCGGTTTA                                                                 >  SRR4302537.5064604/1‑94 (MQ=60)

                              ATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTAC                                                                >  SRR4302537.146243/1‑94 (MQ=60)

                                CAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCG                                                              >  SRR4302537.5168413/1‑94 (MQ=60)

                                 CGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGT                                                             <  SRR4302537.3075927/94‑1 (MQ=60)

                                 AGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGT                                                             <  SRR4302537.1768511/94‑1 (MQ=60)

                                 AGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGT                                                             >  SRR4302537.814290/1‑94 (MQ=60)

                                  GCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTC                                                            <  SRR4302537.2581115/94‑1 (MQ=60)

                                   CGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCG                                                           >  SRR4302537.627355/1‑94 (MQ=60)

                                    GGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATTCAGACCGgaggtgtaccgtctg                                                          >  SRR4302537.3193386/1‑79 (MQ=60)

                                    GGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGG                                                          >  SRR4302537.771427/1‑94 (MQ=60)

                                    GGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGG                                                          >  SRR4302537.3415591/1‑94 (MQ=60)

                                    GGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGG                                                          >  SRR4302537.122488/1‑94 (MQ=60)

                                    GGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGG                                                          >  SRR4302537.223186/1‑94 (MQ=60)

                                    GGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGG                                                          <  SRR4302537.5201184/94‑1 (MQ=60)

                                     GGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCACGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGG                                                         >  SRR4302537.6484657/1‑94 (MQ=60)

                                      GATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTG                                                        >  SRR4302537.3360808/1‑94 (MQ=60)

                                          GAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCG                                                    <  SRR4302537.5457277/94‑1 (MQ=60)

                                          GAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCG                                                    <  SRR4302537.3124405/94‑1 (MQ=60)

                                              CCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCAT                                                >  SRR4302537.5716987/1‑94 (MQ=60)

                                                  CCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCC                                            <  SRR4302537.4690399/94‑1 (MQ=60)

                                                   CGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCT                                           <  SRR4302537.5519068/94‑1 (MQ=60)

                                                   CGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCT                                           >  SRR4302537.5074297/1‑94 (MQ=60)

                                                   CGCGCATAGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCT                                           >  SRR4302537.5156171/1‑94 (MQ=60)

                                                    GCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTG                                          <  SRR4302537.2562777/94‑1 (MQ=60)

                                                     CGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGA                                         >  SRR4302537.2479116/1‑94 (MQ=60)

                                                      GCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAG                                        <  SRR4302537.2203211/94‑1 (MQ=60)

                                                       CATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGC                                       >  SRR4302537.3427381/1‑94 (MQ=60)

                                                       CATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGC                                       >  SRR4302537.1194533/1‑94 (MQ=60)

                                                        ATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCG                                      <  SRR4302537.5496033/94‑1 (MQ=60)

                                                        ATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCG                                      >  SRR4302537.4266420/1‑94 (MQ=60)

                                                        ATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCG                                      >  SRR4302537.6188481/1‑94 (MQ=60)

                                                        ATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCG                                      >  SRR4302537.6443775/1‑94 (MQ=60)

                                                        ATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCG                                      >  SRR4302537.2771328/1‑94 (MQ=60)

                                                        ATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCG                                      >  SRR4302537.2354217/1‑94 (MQ=60)

                                                           GGCAATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATA                                   >  SRR4302537.4385633/1‑94 (MQ=60)

                                                              AATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAG                                <  SRR4302537.600882/94‑1 (MQ=60)

                                                               ATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGC                               >  SRR4302537.1432581/1‑94 (MQ=60)

                                                               ATGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGC                               <  SRR4302537.3143750/94‑1 (MQ=60)

                                                                TGGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGAC                              >  SRR4302537.6487592/1‑94 (MQ=60)

                                                                 GGCGGTCACCAGGTTAGTCTCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCC                             <  SRR4302537.2199979/94‑1 (MQ=60)

                                                                 GGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCC                             >  SRR4302537.2766929/1‑94 (MQ=60)

                                                                 GGCGGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCC                             <  SRR4302537.6207558/94‑1 (MQ=60)

                                                                  GCGGTCACCAGGTTAGTCGCACCCGGCCGGCTGCAGGCCATGCAGACCGCCGGTTTGCCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCG                            <  SRR4302537.5302346/94‑1 (MQ=60)

                                                                    GTTCACCAGGTTAGTCGCCCCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCG                          <  SRR4302537.4170217/94‑1 (MQ=60)

                                                                    GGTCACCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCG                          >  SRR4302537.5895493/1‑94 (MQ=60)

                                                                         CCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTG                     <  SRR4302537.6307986/94‑1 (MQ=60)

                                                                         CCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTG                     >  SRR4302537.4150043/1‑94 (MQ=60)

                                                                         CCAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTG                     >  SRR4302537.4338611/1‑94 (MQ=60)

                                                                          CAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGT                    >  SRR4302537.1047734/1‑94 (MQ=60)

                                                                          CAGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGT                    <  SRR4302537.2710996/94‑1 (MQ=60)

                                                                           AGGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTT                   <  SRR4302537.1658988/94‑1 (MQ=60)

                                                                            GGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTC                  >  SRR4302537.6181174/1‑94 (MQ=60)

                                                                            GGTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTC                  >  SRR4302537.550433/1‑94 (MQ=60)

                                                                             GTTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCA                 >  SRR4302537.5617573/1‑94 (MQ=60)

                                                                              TTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCAT                >  SRR4302537.3152259/1‑94 (MQ=60)

                                                                              GTAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCAT                <  SRR4302537.4097494/94‑1 (MQ=60)

                                                                               TAGTCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATG               >  SRR4302537.2540990/1‑94 (MQ=60)

                                                                                 GTCGCACCCGGCCCGCTACAGTCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGAC             <  SRR4302537.5971219/94‑1 (MQ=60)

                                                                                  TCGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACG            >  SRR4302537.6333055/1‑94 (MQ=60)

                                                                                   CGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGG           >  SRR4302537.3127412/1‑94 (MQ=60)

                                                                                   CGCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGCTCATGACGG           >  SRR4302537.2274858/1‑94 (MQ=60)

                                                                                    GCACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGG          <  SRR4302537.3437684/94‑1 (MQ=60)

                                                                                     CACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGC         >  SRR4302537.6172394/1‑94 (MQ=60)

                                                                                     CACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGC         >  SRR4302537.2175654/1‑94 (MQ=60)

                                                                                     CACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGC         >  SRR4302537.199573/1‑94 (MQ=60)

                                                                                     CACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGC         <  SRR4302537.1129801/94‑1 (MQ=60)

                                                                                     CACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGC         <  SRR4302537.6048212/94‑1 (MQ=60)

                                                                                     CACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGC         >  SRR4302537.5652123/1‑94 (MQ=60)

                                                                                      ACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCC        >  SRR4302537.3963381/1‑94 (MQ=60)

                                                                                      ACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCC        >  SRR4302537.2365125/1‑94 (MQ=60)

                                                                                      ACCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCC        >  SRR4302537.2929687/1‑94 (MQ=60)

                                                                                       CCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCA       <  SRR4302537.5337070/94‑1 (MQ=60)

                                                                                       CCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCA       <  SRR4302537.75759/94‑1 (MQ=60)

                                                                                       CCCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCA       >  SRR4302537.2522287/1‑94 (MQ=60)

                                                                                        CCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAG      <  SRR4302537.6497590/94‑1 (MQ=60)

                                                                                        CCGGCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAG      <  SRR4302537.5928514/94‑1 (MQ=60)

                                                                                           GCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAAT   <  SRR4302537.3507432/94‑1 (MQ=60)

                                                                                           GCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAAT   <  SRR4302537.6391132/94‑1 (MQ=60)

                                                                                           GCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAAT   <  SRR4302537.6216976/94‑1 (MQ=60)

                                                                                           GCCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGACCGCGCCCTGTTCATGACGGGCCAGAAT   >  SRR4302537.5676522/1‑94 (MQ=60)

                                                                                            CCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATA  >  SRR4302537.2235630/1‑94 (MQ=60)

                                                                                            CCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATA  >  SRR4302537.2347363/1‑94 (MQ=60)

ATCGAGGCGGGAACCTGACCAGTGATGCAAATCAGCGGGATGGAGTCCAGCCGCGCATCGGCAATGGCGGTCACCAGGTTAGTCGCACCCGGTCCGCTACAGGCCATACAGACCGCCGGTTTACCGTCGGTGCGCGCCATTCCCTGAGCGATAAAGCCCGCGCCCTGTTCATGACGGGCCAGAATA  >  NC_000913/3850065‑3850250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`