Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,873,627	Δ1 bp	coding (506/672 nt)	yidX →	putative replicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,873,625	0	G	.	99.6%	1139.3 / ‑3.4	242	coding (504/672 nt)	yidX	putative replicase
Reads supporting (aligned to +/- strand): ref base G (0/0); major base . (139/102); minor base A (0/1); total (139/103)
Fisher's exact test for biased strand distribution p-value = 4.26e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 271 total aligned reads displayed.

AAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTA  >  NC_000913/3873533‑3873713

 aaaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCgg                                                                                         >  1:4167478/1‑93 (MQ=255)

 aaaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCgg                                                                                         >  1:1927904/1‑93 (MQ=255)

  aaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCgga                                                                                        >  1:5110996/1‑92 (MQ=255)

  aaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCgga                                                                                        <  2:2537165/93‑2 (MQ=255)

  aaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCgga                                                                                        >  1:1986755/1‑92 (MQ=255)

  aaaTAAAAACATGGATTACTCAAAGGTGATGGCGCTCTACCATCCATTTAAAGTGCAATTTTATGAATACTATTCACCCAGAGGCATTCCgga                                                                                        >  1:1103258/1‑92 (MQ=255)

   aaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggat                                                                                       >  1:998326/1‑91 (MQ=255)

   aaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggat                                                                                       >  1:577801/1‑91 (MQ=255)

   aaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggat                                                                                       <  1:2910563/93‑3 (MQ=255)

    aTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggatg                                                                                      >  2:1741149/1‑90 (MQ=255)

    aTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggatg                                                                                      >  1:936821/1‑90 (MQ=255)

    aTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggatg                                                                                      <  1:2315662/93‑4 (MQ=255)

         aaCATGGATTACTCAAAGGTGATGGCGTTCTTCCATCAATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGtt                                                                                <  1:1629375/93‑1 (MQ=255)

         aaCATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGtt                                                                                >  1:2237309/1‑93 (MQ=255)

          aCATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGttt                                                                               <  1:2128882/93‑1 (MQ=255)

           cATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTc                                                                              >  2:4816390/1‑93 (MQ=255)

            aTGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTcc                                                                             >  2:2816110/1‑93 (MQ=255)

              ggATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCAgc                                                                           >  2:5243843/1‑93 (MQ=255)

               gATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgca                                                                          >  2:1969994/1‑93 (MQ=255)

               gATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgca                                                                          >  1:6275644/1‑93 (MQ=255)

                 ttACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcagc                                                                        >  2:6185116/1‑93 (MQ=255)

                 ttACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcagc                                                                        >  2:2901141/1‑93 (MQ=255)

                  tACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcagca                                                                       <  2:6446977/93‑1 (MQ=255)

                  tACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcagca                                                                       <  1:5560270/93‑1 (MQ=255)

                   aCTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCAt                                                                      <  2:4225014/93‑1 (MQ=255)

                   aCTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCAt                                                                      <  2:5519677/93‑1 (MQ=255)

                     tCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTa                                                                    >  2:3315983/1‑93 (MQ=255)

                     tCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTa                                                                    <  1:3590171/93‑1 (MQ=255)

                      cAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAc                                                                   <  2:460787/93‑1 (MQ=255)

                      cAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAc                                                                   >  1:4488296/1‑93 (MQ=255)

                        aaGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTg                                                                 >  1:741309/1‑93 (MQ=255)

                        aaGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTg                                                                 >  1:5820498/1‑93 (MQ=255)

                          ggTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGcc                                                               <  2:5802748/93‑1 (MQ=255)

                           gTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCa                                                              <  1:2557398/93‑1 (MQ=255)

                            tGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAg                                                             <  1:5601072/93‑1 (MQ=255)

                                ggCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGAc                                                         <  2:3535425/93‑1 (MQ=255)

                                 gCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACt                                                        <  2:2282398/93‑1 (MQ=255)

                                  cGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTg                                                       <  1:5041333/93‑1 (MQ=255)

                                   gTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGt                                                      >  2:5623157/1‑93 (MQ=255)

                                   gTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGt                                                      <  1:4907902/93‑1 (MQ=255)

                                   gTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGt                                                      <  1:2855480/93‑1 (MQ=255)

                                    ttCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGtt                                                     <  1:2025585/93‑1 (MQ=255)

                                     tCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTa                                                    <  1:5408389/93‑1 (MQ=255)

                                       tACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACg                                                  >  2:5172364/1‑93 (MQ=255)

                                        aCCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGc                                                 <  2:5749270/93‑1 (MQ=255)

                                        aCCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGc                                                 <  1:2837387/93‑1 (MQ=255)

                                         ccatccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCt                                                >  2:1634493/1‑93 (MQ=255)

                                         ccatccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCt                                                >  2:219408/1‑93 (MQ=255)

                                         ccatccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCt                                                <  1:3129214/93‑1 (MQ=255)

                                          catccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTg                                               <  1:5728325/93‑1 (MQ=255)

                                          catccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTg                                               >  2:3919348/1‑93 (MQ=255)

                                           atccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTgg                                              >  1:2371985/1‑93 (MQ=255)

                                            tccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCGGTGACTGTTACGCTGGa                                             >  2:4904444/1‑93 (MQ=255)

                                             ccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAc                                            >  2:5346286/1‑93 (MQ=255)

                                               atTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcat                                          >  1:1557355/1‑93 (MQ=255)

                                               atTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcat                                          >  2:119171/1‑93 (MQ=255)

                                                tttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTa                                                    >  2:3864309/1‑82 (MQ=255)

                                                tttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatc                                         >  1:3007269/1‑93 (MQ=255)

                                                tttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatc                                         <  2:1499236/93‑1 (MQ=255)

                                                tttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGAATTACTGCCAGTGACTGTTACGCTGGAcatc                                         >  1:1466678/1‑93 (MQ=255)

                                                  tAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatcat                                       <  2:5948571/93‑1 (MQ=255)

                                                  tAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatcat                                       >  1:5290710/1‑93 (MQ=255)

                                                   aaaGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCAtt                                      <  1:4743454/93‑1 (MQ=255)

                                                   aaaGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCAtt                                      >  1:5661112/1‑93 (MQ=255)

                                                   aaaGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCAtt                                      >  1:10502/1‑93 (MQ=255)

                                                    aaGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTa                                     >  1:4049917/1‑93 (MQ=255)

                                                     aGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTAc                                    <  2:5855042/93‑1 (MQ=255)

                                                      gTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACt                                   >  1:4041439/1‑93 (MQ=255)

                                                          gATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAc                               >  2:1790458/1‑93 (MQ=255)

                                                          gATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAc                               <  2:3078/93‑1 (MQ=255)

                                                           aTTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAcc                              >  1:792228/1‑93 (MQ=255)

                                                            ttttATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCg                             >  1:4893061/1‑93 (MQ=255)

                                                               tATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTg                          >  2:888619/1‑93 (MQ=255)

                                                               tATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTg                          <  1:381294/93‑1 (MQ=255)

                                                               tATGAATACTATTCACCAAGAGGCATTCC‑GGATGGTGTTTTCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTg                          >  1:3537899/1‑93 (MQ=255)

                                                                aTGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGc                         >  2:2029850/1‑93 (MQ=255)

                                                                aTGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGc                         <  1:1704712/93‑1 (MQ=255)

                                                                    aTACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCACAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAAtt                     >  1:6402784/1‑93 (MQ=255)

                                                                      aCTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTc                   <  2:3473020/93‑1 (MQ=255)

                                                                      aCTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTc                   <  1:2469493/93‑1 (MQ=255)

                                                                       cTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCt                  >  1:1859078/1‑93 (MQ=255)

                                                                        tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTg                 >  2:3252696/1‑93 (MQ=255)

                                                                        tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTg                 <  2:1312512/93‑1 (MQ=255)

                                                                        tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTg                 >  1:3413777/1‑93 (MQ=255)

                                                                        tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTg                 >  1:4296606/1‑93 (MQ=255)

                                                                        tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTg                 <  1:364902/93‑1 (MQ=255)

                                                                        tATTCACCAAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTg                 >  2:6316626/1‑93 (MQ=255)

                                                                         aTTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTgg                >  1:3210507/1‑93 (MQ=255)

                                                                         aTTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTgg                >  1:5615853/1‑93 (MQ=255)

                                                                         aTTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTgg                >  1:2213106/1‑93 (MQ=255)

                                                                          ttCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGt               <  2:2487209/93‑1 (MQ=255)

                                                                          ttCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGt               >  1:6087272/1‑93 (MQ=255)

                                                                             aCCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGt            <  2:3807177/93‑1 (MQ=255)

                                                                              cccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGta           <  2:4724598/93‑1 (MQ=255)

                                                                              cccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGta           >  1:1233815/1‑93 (MQ=255)

                                                                               ccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtat          >  1:2766721/1‑93 (MQ=255)

                                                                               ccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtat          >  2:6267358/1‑93 (MQ=255)

                                                                                  gagGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATg       >  1:1726632/1‑93 (MQ=255)

                                                                                  gagGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATg       >  2:1066145/1‑93 (MQ=255)

                                                                                    ggCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCa     <  2:4071946/93‑1 (MQ=255)

AAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTA  >  NC_000913/3873533‑3873713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAAT  >  NC_000913/3873534‑3873720

AAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGA                                                                                               >  SRR4302537.5146214/1‑94 (MQ=60)

AAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGA                                                                                               >  SRR4302537.2000567/1‑94 (MQ=60)

AAAATAAAAACATGGATTACTCAAAGGTGATGGCGCTCTACCATCCATTTAAAGTGCAATTTTATGAATACTATTCACCCAGAGGCATTCCGGA                                                                                               >  SRR4302537.1110878/1‑94 (MQ=60)

  AATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATG                                                                                            >  SRR4302537.943275/1‑94 (MQ=60)

  AATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATG                                                                                            <  SRR4302537.2931011/94‑1 (MQ=60)

  AATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATG                                                                                            <  SRR4302537.5646160/94‑1 (MQ=60)

   ATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGG                                                                                           <  SRR4302537.5206629/94‑1 (MQ=60)

   ATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGG                                                                                           >  SRR4302537.2430700/1‑94 (MQ=60)

   ATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGG                                                                                           <  SRR4302537.2332009/94‑1 (MQ=60)

    TAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGT                                                                                          <  SRR4302537.4610792/94‑1 (MQ=60)

     AAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTG                                                                                         <  SRR4302537.2326085/94‑1 (MQ=60)

     AAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTG                                                                                         <  SRR4302537.5785622/94‑1 (MQ=60)

      AAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGT                                                                                        <  SRR4302537.2531643/94‑1 (MQ=60)

      AAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGT                                                                                        <  SRR4302537.353540/94‑1 (MQ=60)

       AAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTT                                                                                       <  SRR4302537.3952781/94‑1 (MQ=60)

       AAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTT                                                                                       >  SRR4302537.2253089/1‑94 (MQ=60)

        AACATGGATTACTCAAAGGTGATGGCGTTCTTCCATCAATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTT                                                                                      <  SRR4302537.1640777/94‑1 (MQ=60)

        AACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTT                                                                                      >  SRR4302537.942309/1‑94 (MQ=60)

         ACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTC                                                                                     >  SRR4302537.4076967/1‑94 (MQ=60)

         ACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTC                                                                                     <  SRR4302537.2143856/94‑1 (MQ=60)

          CATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCC                                                                                    >  SRR4302537.1234322/1‑94 (MQ=60)

          CATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCC                                                                                    >  SRR4302537.4100382/1‑94 (MQ=60)

          CATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCC                                                                                    <  SRR4302537.5530143/94‑1 (MQ=60)

           ATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCG                                                                                   >  SRR4302537.5001840/1‑94 (MQ=60)

             GGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCA                                                                                 >  SRR4302537.766735/1‑94 (MQ=60)

             GGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCA                                                                                 >  SRR4302537.6318703/1‑94 (MQ=60)

              GATTCCTCAAAGGTGATGGCGTTCTACCAGCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAG                                                                                <  SRR4302537.4932426/94‑1 (MQ=60)

              GATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAG                                                                                >  SRR4302537.5721843/1‑94 (MQ=60)

               ATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGC                                                                               <  SRR4302537.2134135/94‑1 (MQ=60)

                TTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCA                                                                              <  SRR4302537.1595481/94‑1 (MQ=60)

                 TACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCAT                                                                             <  SRR4302537.5598264/94‑1 (MQ=60)

                  ACTCAAAGGGGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATT                                                                            >  SRR4302537.6065730/1‑94 (MQ=60)

                   CTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTA                                                                           <  SRR4302537.196843/94‑1 (MQ=60)

                    TCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAC                                                                          <  SRR4302537.3615479/94‑1 (MQ=60)

                    TCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAC                                                                          >  SRR4302537.4519344/1‑94 (MQ=60)

                    TCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAC                                                                          >  SRR4302537.2260860/1‑94 (MQ=60)

                     CAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACT                                                                         >  SRR4302537.5690557/1‑94 (MQ=60)

                      AAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTG                                                                        >  SRR4302537.5860392/1‑94 (MQ=60)

                      AAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTG                                                                        >  SRR4302537.746373/1‑94 (MQ=60)

                        AGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCC                                                                      <  SRR4302537.3135978/94‑1 (MQ=60)

                         GGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCA                                                                     <  SRR4302537.5141831/94‑1 (MQ=60)

                          GTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAG                                                                    <  SRR4302537.2575324/94‑1 (MQ=60)

                          GTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAG                                                                    >  SRR4302537.2039873/1‑94 (MQ=60)

                           TGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGT                                                                   <  SRR4302537.5639361/94‑1 (MQ=60)

                            GATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTG                                                                  >  SRR4302537.1693450/1‑94 (MQ=60)

                            GATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGACAGTG                                                                  >  SRR4302537.5685992/1‑94 (MQ=60)

                              TGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGAC                                                                <  SRR4302537.512576/94‑1 (MQ=60)

                               GGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACT                                                               <  SRR4302537.2236176/94‑1 (MQ=60)

                               GGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACT                                                               <  SRR4302537.4274828/94‑1 (MQ=60)

                                 CGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGT                                                             >  SRR4302537.735254/1‑94 (MQ=60)

                                 CGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGT                                                             <  SRR4302537.5006069/94‑1 (MQ=60)

                                 CGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGT                                                             >  SRR4302537.5556867/1‑94 (MQ=60)

                                 CGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGT                                                             <  SRR4302537.675562/94‑1 (MQ=60)

                                 CGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGT                                                             <  SRR4302537.5076041/94‑1 (MQ=60)

                                  GTTCTACTATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTT                                                            <  SRR4302537.2875497/94‑1 (MQ=60)

                                  GTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTT                                                            <  SRR4302537.2875498/94‑1 (MQ=60)

                                  GTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTT                                                            <  SRR4302537.4941776/94‑1 (MQ=60)

                                  GTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTT                                                            <  SRR4302537.2807739/94‑1 (MQ=60)

                                   TTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTA                                                           <  SRR4302537.2039715/94‑1 (MQ=60)

                                    tctattccgtATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTAC                                                          <  SRR4302537.3891359/84‑1 (MQ=60)

                                    TCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTAC                                                          <  SRR4302537.6096822/94‑1 (MQ=60)

                                    TCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTAC                                                          <  SRR4302537.5445274/94‑1 (MQ=60)

                                       ACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCT                                                       <  SRR4302537.2857238/94‑1 (MQ=60)

                                       ACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCT                                                       <  SRR4302537.1672848/94‑1 (MQ=60)

                                        CCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTG                                                      <  SRR4302537.3151150/94‑1 (MQ=60)

                                         CATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGG                                                     >  SRR4302537.2388698/1‑94 (MQ=60)

                                         CATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGG                                                     <  SRR4302537.5767533/94‑1 (MQ=60)

                                         CATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGG                                                     >  SRR4302537.152047/1‑94 (MQ=60)

                                          ATCCATTTAAAGTTCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGA                                                    <  SRR4302537.3598508/94‑1 (MQ=60)

                                          ATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGA                                                    >  SRR4302537.2014399/1‑94 (MQ=60)

                                            CCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACA                                                  >  SRR4302537.3104069/1‑94 (MQ=60)

                                            CCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACA                                                  >  SRR4302537.3202270/1‑94 (MQ=60)

                                             CATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACAT                                                 >  SRR4302537.1568226/1‑94 (MQ=60)

                                             CATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACAT                                                 >  SRR4302537.194033/1‑94 (MQ=60)

                                              ATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATC                                                >  SRR4302537.621489/1‑94 (MQ=60)

                                              ATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATC                                                >  SRR4302537.3028207/1‑94 (MQ=60)

                                              ATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGAATTACTGCCAGTGACTGTTACGCTGGACATC                                                >  SRR4302537.1476878/1‑94 (MQ=60)

                                              ATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGAATTCC‑GGATGGTGTTTCCGCAGAATTACTGCCAGTGACTGTTACGCTGAACATC                                                >  SRR4302537.4139338/1‑94 (MQ=60)

                                               TTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCA                                               <  SRR4302537.1855682/94‑1 (MQ=60)

                                               TTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCA                                               <  SRR4302537.2731283/94‑1 (MQ=60)

                                                TTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCAT                                              >  SRR4302537.5327067/1‑94 (MQ=60)

                                                 TAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATT                                             <  SRR4302537.2740431/94‑1 (MQ=60)

                                                 TAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATT                                             >  SRR4302537.5699853/1‑94 (MQ=60)

                                                 TAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATT                                             >  SRR4302537.4470069/1‑94 (MQ=60)

                                                 TAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATT                                             >  SRR4302537.10579/1‑94 (MQ=60)

                                                  AAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTA                                            >  SRR4302537.4078234/1‑94 (MQ=60)

                                                  AAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTA                                            <  SRR4302537.4776234/94‑1 (MQ=60)

                                                    AGTTCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACT                                          >  SRR4302537.5283001/1‑94 (MQ=60)

                                                    AGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACT                                          >  SRR4302537.4069708/1‑94 (MQ=60)

                                                    AGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACT                                          >  SRR4302537.917571/1‑94 (MQ=60)

                                                    AGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACT                                          <  SRR4302537.1256631/94‑1 (MQ=60)

                                                     GTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTG                                         >  SRR4302537.5607527/1‑94 (MQ=60)

                                                      TGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGC                                        <  SRR4302537.1062297/94‑1 (MQ=60)

                                                       GCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCA                                       >  SRR4302537.3367519/1‑94 (MQ=60)

                                                        CGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAC                                      >  SRR4302537.2960819/1‑94 (MQ=60)

                                                         GATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACC                                     <  SRR4302537.3826004/94‑1 (MQ=60)

                                                         GATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACC                                     >  SRR4302537.797665/1‑94 (MQ=60)

                                                         GATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACC                                     >  SRR4302537.144813/1‑94 (MQ=60)

                                                         GATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACC                                     >  SRR4302537.2144800/1‑94 (MQ=60)

                                                         GATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACC                                     >  SRR4302537.4900956/1‑94 (MQ=60)

                                                         GATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACC                                     >  SRR4302537.757925/1‑94 (MQ=60)

                                                          ATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCG                                    >  SRR4302537.4926847/1‑94 (MQ=60)

                                                             TTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTG                                 >  SRR4302537.967092/1‑94 (MQ=60)

                                                             TTATGAATACTATTCACCAAGAGGCATTCC‑GGATGGTGTTTTCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTG                                 >  SRR4302537.3562888/1‑94 (MQ=60)

                                                              TATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGC                                <  SRR4302537.383938/94‑1 (MQ=60)

                                                               ATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCA                               <  SRR4302537.1716630/94‑1 (MQ=60)

                                                                TGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAA                              <  SRR4302537.1136300/94‑1 (MQ=60)

                                                                  AATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATT                            >  SRR4302537.4255147/1‑94 (MQ=60)

                                                                  AATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATT                            <  SRR4302537.1787048/94‑1 (MQ=60)

                                                                  AATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATT                            >  SRR4302537.2926238/1‑94 (MQ=60)

                                                                  AATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATT                            >  SRR4302537.1595207/1‑94 (MQ=60)

                                                                  AATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCACAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATT                            >  SRR4302537.6446368/1‑94 (MQ=60)

                                                                   ATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTT                           >  SRR4302537.6370519/1‑94 (MQ=60)

                                                                     ACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCT                         <  SRR4302537.2486855/94‑1 (MQ=60)

                                                                     ACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCT                         >  SRR4302537.1872028/1‑94 (MQ=60)

                                                                      CTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTG                        <  SRR4302537.1923871/94‑1 (MQ=60)

                                                                      CTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTG                        >  SRR4302537.3437951/1‑94 (MQ=60)

                                                                      CTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTG                        >  SRR4302537.4326473/1‑94 (MQ=60)

                                                                       TATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGG                       <  SRR4302537.5427797/94‑1 (MQ=60)

                                                                       TATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGG                       >  SRR4302537.3233085/1‑94 (MQ=60)

                                                                       TATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGG                       <  SRR4302537.297253/94‑1 (MQ=60)

                                                                       TATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGG                       <  SRR4302537.367437/94‑1 (MQ=60)

                                                                       TATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGG                       >  SRR4302537.2228713/1‑94 (MQ=60)

                                                                       TATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGG                       >  SRR4302537.2341327/1‑94 (MQ=60)

                                                                       TATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGG                       >  SRR4302537.5654251/1‑94 (MQ=60)

                                                                        ATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGT                      >  SRR4302537.6129090/1‑94 (MQ=60)

                                                                         TTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTT                     <  SRR4302537.3352874/94‑1 (MQ=60)

                                                                           CACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGT                   >  SRR4302537.5825521/1‑94 (MQ=60)

                                                                           CACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGT                   >  SRR4302537.5632965/1‑94 (MQ=60)

                                                                           CACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGT                   <  SRR4302537.2854149/94‑1 (MQ=60)

                                                                            ACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTA                  >  SRR4302537.1736516/1‑94 (MQ=60)

                                                                            ACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTA                  >  SRR4302537.1242396/1‑94 (MQ=60)

                                                                             CCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTAT                 >  SRR4302537.2786062/1‑94 (MQ=60)

                                                                             CCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTAT                 >  SRR4302537.3504004/1‑94 (MQ=60)

                                                                               CAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATAT               <  SRR4302537.2147932/94‑1 (MQ=60)

                                                                                AGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATG              <  SRR4302537.2449473/94‑1 (MQ=60)

                                                                                AGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATG              >  SRR4302537.5774349/1‑94 (MQ=60)

                                                                                AGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATG              >  SRR4302537.1738695/1‑94 (MQ=60)

                                                                                AGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATG              <  SRR4302537.1978030/94‑1 (MQ=60)

                                                                                AGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATG              >  SRR4302537.3630945/1‑94 (MQ=60)

                                                                                AGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATG              >  SRR4302537.4758636/1‑94 (MQ=60)

                                                                                    GCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGT          >  SRR4302537.5763945/1‑94 (MQ=60)

                                                                                      ATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAA        >  SRR4302537.2481830/1‑94 (MQ=60)

                                                                                      ATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAA        <  SRR4302537.3662011/94‑1 (MQ=60)

                                                                                      ATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGGGACTGTTACGCTGGCCATAATTACTGCACGGCTGAATTTTCTGGTTGTATATcaagaaa        >  SRR4302537.1004702/1‑87 (MQ=60)

                                                                                       TTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAA       <  SRR4302537.4678152/94‑1 (MQ=60)

                                                                                        TCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAAC      >  SRR4302537.1025243/1‑94 (MQ=60)

                                                                                          CCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACC     <  SRR4302537.1309909/94‑1 (MQ=60)

                                                                                          CCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACC     <  SRR4302537.4198954/94‑1 (MQ=60)

                                                                                           CGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCA    <  SRR4302537.6378584/94‑1 (MQ=60)

                                                                                           CGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCA    >  SRR4302537.2561995/1‑94 (MQ=60)

                                                                                           CGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCA    <  SRR4302537.5175651/94‑1 (MQ=60)

                                                                                           CGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCA    <  SRR4302537.4445073/94‑1 (MQ=60)

                                                                                            GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAA   >  SRR4302537.5923214/1‑94 (MQ=60)

                                                                                            GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAA   >  SRR4302537.2190012/1‑94 (MQ=60)

                                                                                             GATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAAT  <  SRR4302537.5489994/94‑1 (MQ=60)

                                                                                             GATGGTGTTTCCGCAGCATTACTGCCAGTGACTATTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAAT  <  SRR4302537.1737590/94‑1 (MQ=60)

AAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAAT  >  NC_000913/3873534‑3873720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`