Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,903,666	G→A	T177M (ACG→ATG)	bglG ←	BglG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,903,666	0	G	A	97.0%	1057.9 / 9.6	300	T177M (ACG→ATG)	bglG	BglG
Reads supporting (aligned to +/- strand): ref base G (6/3); new base A (184/107); total (190/110)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01

Only 100 of 300 total aligned reads displayed.

GTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCA  >  NC_000913/3903576‑3903756

gtAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGATCTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATg                                                                                          >  2:3107452/1‑93 (MQ=255)

  aaCCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGac                                                                                        >  1:490486/1‑93 (MQ=255)

    ccAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGacac                                                                                      >  2:2765017/1‑93 (MQ=255)

      aGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCt                                                                                    >  1:1537077/1‑93 (MQ=255)

      aGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCt                                                                                    >  2:21437/1‑93 (MQ=255)

       gTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTg                                                                                   >  2:1064825/1‑93 (MQ=255)

       gTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTg                                                                                   >  1:2887013/1‑93 (MQ=255)

          gCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCaa                                                                                <  2:5492112/93‑1 (MQ=255)

            tGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACa                                                                              >  1:1056438/1‑93 (MQ=255)

            tGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACa                                                                              <  2:6468830/93‑1 (MQ=255)

            tGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACa                                                                              >  2:6372226/1‑93 (MQ=255)

             gATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACAt                                                                             >  2:3393588/1‑93 (MQ=255)

                aaCTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACAtcct                                                                          <  1:110120/93‑1 (MQ=255)

                aaCTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACAtcct                                                                          >  1:2411966/1‑93 (MQ=255)

                 aCTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACAtcctc                                                                         >  2:4461630/1‑93 (MQ=255)

                 aCTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACAtcctc                                                                         >  2:1965508/1‑93 (MQ=255)

                  cTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACAtcctcc                                                                        >  1:4262708/1‑93 (MQ=255)

                  cTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACAtcctcc                                                                        >  1:4099373/1‑93 (MQ=255)

                  cTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACAtcctcc                                                                        >  2:4602702/1‑93 (MQ=255)

                    cAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCat                                                                      <  1:1822506/93‑1 (MQ=255)

                    cAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCat                                                                      >  2:1195147/1‑93 (MQ=255)

                     aaGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCata                                                                     <  2:2841927/93‑1 (MQ=255)

                     aaGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCata                                                                     <  2:3868310/93‑1 (MQ=255)

                      aGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCatat                                                                    <  2:5244564/93‑1 (MQ=255)

                      aGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCatat                                                                    <  1:3228689/93‑1 (MQ=255)

                       gCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATAtt                                                                   >  2:2663016/1‑93 (MQ=255)

                        cTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATAttt                                                                  >  2:2621532/1‑93 (MQ=255)

                         tttCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTc                                                                 >  2:1777895/1‑93 (MQ=255)

                         tttCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTc                                                                 <  2:6313695/93‑1 (MQ=255)

                           tcttcCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCg                                                               >  2:3313732/1‑93 (MQ=255)

                             ttcCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCt                                                             >  1:5597956/1‑93 (MQ=255)

                             ttcCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCt                                                             >  2:935253/1‑93 (MQ=255)

                              tcCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTc                                                            <  1:3441351/93‑1 (MQ=255)

                               ccTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCa                                                           <  2:1527704/93‑1 (MQ=255)

                               ccTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCa                                                           <  1:6365070/93‑1 (MQ=255)

                                cTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCAt                                                          <  1:700446/93‑1 (MQ=255)

                                 tGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGC‑ACATCCTCCATATTTCCGCTCAttt                                                        >  1:5924289/1‑93 (MQ=255)

                                  ggTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCAttt                                                        >  1:1563921/1‑93 (MQ=255)

                                  ggTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCAttt                                                        >  2:1614478/1‑93 (MQ=255)

                                  ggTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCAttt                                                        <  1:1960331/93‑1 (MQ=255)

                                  ggTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCAttt                                                        >  2:4211278/1‑93 (MQ=255)

                                   gTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTg                                                       <  1:54134/93‑1 (MQ=255)

                                   gTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTg                                                       <  1:6163973/93‑1 (MQ=255)

                                   gTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTg                                                       <  1:2392817/93‑1 (MQ=255)

                                    tAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCACCATCCTCCATATTTCCGCTCATTTgg                                                      <  2:5965156/93‑1 (MQ=255)

                                     aaTTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTggg                                                     >  1:4514903/1‑93 (MQ=255)

                                     aaTTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTggg                                                     >  2:3724185/1‑93 (MQ=255)

                                       ttAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCa                                                   <  1:2270332/93‑1 (MQ=255)

                                       ttAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCa                                                   >  2:483717/1‑93 (MQ=255)

                                         aaGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACt                                                 >  2:4036602/1‑93 (MQ=255)

                                            gCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGAc                                              >  2:3245747/1‑93 (MQ=255)

                                            gCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGAc                                              >  1:2625545/1‑93 (MQ=255)

                                             ctgaactgaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGAcc                                             <  1:5025801/93‑1 (MQ=255)

                                              tgaactgaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGTGCACTGACCa                                            >  1:3052086/1‑93 (MQ=255)

                                              tgaactgaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCa                                            >  2:2348644/1‑93 (MQ=255)

                                               gaactgaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAg                                           >  2:3484966/1‑93 (MQ=255)

                                                aactgaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGa                                          >  1:3160815/1‑93 (MQ=255)

                                                  ctgaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATg                                        >  1:2736060/1‑93 (MQ=255)

                                                    gaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCa                                      >  2:5883012/1‑93 (MQ=255)

                                                    gaaATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCa                                      >  2:112973/1‑93 (MQ=255)

                                                     aaaTTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCAt                                     >  1:5740338/1‑93 (MQ=255)

                                                     aaaTTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCAt                                     >  1:3970281/1‑93 (MQ=255)

                                                      aaTTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATg                                    <  1:487620/93‑1 (MQ=255)

                                                      aaTTTTATTAATTGCAGCATGTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATg                                    <  1:2955850/93‑1 (MQ=255)

                                                        ttttATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGc                                  >  1:4382455/1‑93 (MQ=255)

                                                        ttttATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGc                                  >  1:1440027/1‑93 (MQ=255)

                                                         tttATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCa                                 >  2:3596473/1‑93 (MQ=255)

                                                           tattaATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAAt                               <  1:3617866/93‑1 (MQ=255)

                                                           tattaATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAAt                               >  2:4987352/1‑93 (MQ=255)

                                                             ttaATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATaa                             >  1:519327/1‑93 (MQ=255)

                                                                aTTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGc                          >  1:4800275/1‑93 (MQ=255)

                                                                aTTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGc                          >  2:5432875/1‑93 (MQ=255)

                                                                 ttGCAGCATTTCGCGCATTAACTGCATGACCCCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGcc                         <  1:5263768/93‑1 (MQ=255)

                                                                 ttGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGcc                         >  2:5016259/1‑93 (MQ=255)

                                                                 ttGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGcc                         >  1:4966845/1‑93 (MQ=255)

                                                                   gcagcaTTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCa                       <  1:5904987/93‑1 (MQ=255)

                                                                     agcaTTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACt                     >  2:1147518/1‑93 (MQ=255)

                                                                       caTTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTc                   >  1:859030/1‑93 (MQ=255)

                                                                        aTTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCa                  <  2:3779373/93‑1 (MQ=255)

                                                                        aTTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCa                  <  1:376755/93‑1 (MQ=255)

                                                                        aTTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCa                  <  2:6057002/93‑1 (MQ=255)

                                                                         tttCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCAt                 >  1:420682/1‑93 (MQ=255)

                                                                         tttCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCAt                 >  1:2137894/1‑93 (MQ=255)

                                                                         tttCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCAt                 >  1:2569187/1‑93 (MQ=255)

                                                                         tttCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCAt                 >  2:2228159/1‑93 (MQ=255)

                                                                          ttCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATc                <  1:1272014/93‑1 (MQ=255)

                                                                          ttCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATc                <  2:3800200/93‑1 (MQ=255)

                                                                             gcgcATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCttt             >  2:780905/1‑93 (MQ=255)

                                                                              cgcATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTc            <  2:5138407/93‑1 (MQ=255)

                                                                              cgcATTAACTGCATGACACCGGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTc            <  2:5593792/93‑1 (MQ=255)

                                                                               gcATTAACTGCATGACACCTGCAACATCCTCCATATTTCTGCTCATTTGGGCACTGAACAGATGCATGGCCATAAAGCTCACTTCATCCTTCg           >  2:2169472/1‑93 (MQ=255)

                                                                                  ttAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTa        <  1:5502571/93‑1 (MQ=255)

                                                                                  ttAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTa        >  1:3380731/1‑93 (MQ=255)

                                                                                   tAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTaa       >  1:3895133/1‑93 (MQ=255)

                                                                                    aaCTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAAc      <  2:4362795/93‑1 (MQ=255)

                                                                                     aCTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACt     >  1:3058768/1‑93 (MQ=255)

                                                                                      cTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTg    >  1:2863396/1‑93 (MQ=255)

                                                                                       tGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGc   >  2:4172172/1‑93 (MQ=255)

                                                                                       tGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGc   >  1:1654605/1‑93 (MQ=255)

                                                                                        gCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCa  <  2:6318630/93‑1 (MQ=255)

GTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCA  >  NC_000913/3903576‑3903756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGC  >  NC_000913/3903573‑3903759

TGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCA                                                                                               >  SRR4302537.6226630/1‑94 (MQ=60)

 GTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCAT                                                                                              <  SRR4302537.5023349/94‑1 (MQ=60)

  TGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATG                                                                                             >  SRR4302537.4871912/1‑94 (MQ=60)

  TGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATG                                                                                             >  SRR4302537.158040/1‑94 (MQ=60)

   GTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGA                                                                                            >  SRR4302537.343848/1‑94 (MQ=60)

   GTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGA                                                                                            <  SRR4302537.5947176/94‑1 (MQ=60)

    TAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGAC                                                                                           >  SRR4302537.2476167/1‑94 (MQ=60)

    TAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGAC                                                                                           >  SRR4302537.493855/1‑94 (MQ=60)

    TAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGAC                                                                                           <  SRR4302537.2355639/94‑1 (MQ=60)

       CCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACC                                                                                        >  SRR4302537.1408859/1‑94 (MQ=60)

        CAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCT                                                                                       <  SRR4302537.3160791/94‑1 (MQ=60)

        CAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCT                                                                                       >  SRR4302537.1547813/1‑94 (MQ=60)

         AGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTG                                                                                      >  SRR4302537.5044588/1‑94 (MQ=60)

         AGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTG                                                                                      >  SRR4302537.2907276/1‑94 (MQ=60)

             GCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAAC                                                                                  <  SRR4302537.1068761/94‑1 (MQ=60)

             GCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAAC                                                                                  <  SRR4302537.403561/94‑1 (MQ=60)

              CTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACA                                                                                 <  SRR4302537.5309225/94‑1 (MQ=60)

              CTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACA                                                                                 >  SRR4302537.1063726/1‑94 (MQ=60)

              CTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACA                                                                                 <  SRR4302537.2109615/94‑1 (MQ=60)

               TGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACAT                                                                                >  SRR4302537.669351/1‑94 (MQ=60)

               TGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACAT                                                                                >  SRR4302537.6346276/1‑94 (MQ=60)

                 ATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCC                                                                              >  SRR4302537.3079829/1‑94 (MQ=60)

                  TAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCT                                                                             >  SRR4302537.56942/1‑94 (MQ=60)

                  TAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCT                                                                             >  SRR4302537.2428946/1‑94 (MQ=60)

                   AACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTC                                                                            <  SRR4302537.110928/94‑1 (MQ=60)

                    ACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCC                                                                           >  SRR4302537.4127991/1‑94 (MQ=60)

                    ACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCC                                                                           >  SRR4302537.4292328/1‑94 (MQ=60)

                     CTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCA                                                                          <  SRR4302537.391474/94‑1 (MQ=60)

                       CAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATA                                                                        <  SRR4302537.1835209/94‑1 (MQ=60)

                       CAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATA                                                                        <  SRR4302537.1732380/94‑1 (MQ=60)

                        AAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATAT                                                                       >  SRR4302537.2413766/1‑94 (MQ=60)

                        AAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATAT                                                                       >  SRR4302537.3045747/1‑94 (MQ=60)

                        AAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATAT                                                                       >  SRR4302537.3277287/1‑94 (MQ=60)

                         AGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATT                                                                      <  SRR4302537.3251442/94‑1 (MQ=60)

                           CTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTC                                                                    >  SRR4302537.3288922/1‑94 (MQ=60)

                           CTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTC                                                                    >  SRR4302537.558032/1‑94 (MQ=60)

                            TTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCC                                                                   >  SRR4302537.2280627/1‑94 (MQ=60)

                            TTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCC                                                                   >  SRR4302537.2908364/1‑94 (MQ=60)

                            TTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCC                                                                   <  SRR4302537.2633407/94‑1 (MQ=60)

                               CTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCT                                                                >  SRR4302537.5636230/1‑94 (MQ=60)

                               CTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCT                                                                >  SRR4302537.2931049/1‑94 (MQ=60)

                               CTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCT                                                                <  SRR4302537.2979024/94‑1 (MQ=60)

                                TTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTC                                                               >  SRR4302537.1533246/1‑94 (MQ=60)

                                TTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTC                                                               >  SRR4302537.5515462/1‑94 (MQ=60)

                                 TCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCA                                                              <  SRR4302537.3465703/94‑1 (MQ=60)

                                  CCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCAT                                                             <  SRR4302537.6408485/94‑1 (MQ=60)

                                   CTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGC‑ACATCCTCCATATTTCCGCTCATTT                                                           >  SRR4302537.5964943/1‑94 (MQ=60)

                                   CTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATT                                                            <  SRR4302537.705237/94‑1 (MQ=60)

                                   CTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATT                                                            >  SRR4302537.4455890/1‑94 (MQ=60)

                                    TGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTT                                                           <  SRR4302537.2342261/94‑1 (MQ=60)

                                    TGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTT                                                           >  SRR4302537.1574830/1‑94 (MQ=60)

                                     GGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTG                                                          <  SRR4302537.1973967/94‑1 (MQ=60)

                                     GGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTG                                                          >  SRR4302537.739434/1‑94 (MQ=60)

                                      GTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGG                                                         <  SRR4302537.54532/94‑1 (MQ=60)

                                      GTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGG                                                         <  SRR4302537.2409669/94‑1 (MQ=60)

                                      GTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGG                                                         <  SRR4302537.6206399/94‑1 (MQ=60)

                                       TAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGG                                                        >  SRR4302537.4546125/1‑94 (MQ=60)

                                       TAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGG                                                        >  SRR4302537.1560057/1‑94 (MQ=60)

                                       TAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGG                                                        >  SRR4302537.5688446/1‑94 (MQ=60)

                                        AATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGC                                                       >  SRR4302537.381445/1‑94 (MQ=60)

                                         ATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCA                                                      <  SRR4302537.3697149/94‑1 (MQ=60)

                                          TTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCAC                                                     <  SRR4302537.2286365/94‑1 (MQ=60)

                                           TAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACT                                                    >  SRR4302537.4790224/1‑94 (MQ=60)

                                            AAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTG                                                   >  SRR4302537.222452/1‑94 (MQ=60)

                                            AAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTG                                                   >  SRR4302537.3156045/1‑94 (MQ=60)

                                            AAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTG                                                   <  SRR4302537.6006146/94‑1 (MQ=60)

                                            AAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTG                                                   >  SRR4302537.580340/1‑94 (MQ=60)

                                              GGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGAC                                                 >  SRR4302537.2643940/1‑94 (MQ=60)

                                               GCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACC                                                >  SRR4302537.4935889/1‑94 (MQ=60)

                                                CTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGTGCACTGACCA                                               >  SRR4302537.3073357/1‑94 (MQ=60)

                                                CTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCA                                               >  SRR4302537.3074824/1‑94 (MQ=60)

                                                CTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCA                                               <  SRR4302537.5060413/94‑1 (MQ=60)

                                                  GAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGA                                             >  SRR4302537.3183005/1‑94 (MQ=60)

                                                   AACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGAT                                            <  SRR4302537.4033837/94‑1 (MQ=60)

                                                   AACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGAT                                            <  SRR4302537.3419264/94‑1 (MQ=60)

                                                   AACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGAT                                            <  SRR4302537.4358615/94‑1 (MQ=60)

                                                   AACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGAT                                            >  SRR4302537.5821928/1‑94 (MQ=60)

                                                   AACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGAT                                            <  SRR4302537.2482451/94‑1 (MQ=60)

                                                    ACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATG                                           >  SRR4302537.2755159/1‑94 (MQ=60)

                                                    ACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATG                                           >  SRR4302537.1893299/1‑94 (MQ=60)

                                                     CTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGC                                          >  SRR4302537.5208922/1‑94 (MQ=60)

                                                      TGAAGTTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCA                                         >  SRR4302537.2597944/1‑94 (MQ=60)

                                                      TGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCA                                         <  SRR4302537.4979546/94‑1 (MQ=60)

                                                      TGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCA                                         >  SRR4302537.2901043/1‑94 (MQ=60)

                                                      TGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCA                                         >  SRR4302537.4991231/1‑94 (MQ=60)

                                                       GAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCAT                                        >  SRR4302537.5779644/1‑94 (MQ=60)

                                                       GAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCAT                                        >  SRR4302537.1354142/1‑94 (MQ=60)

                                                       GAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCAT                                        >  SRR4302537.3998066/1‑94 (MQ=60)

                                                        AAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATG                                       <  SRR4302537.3529395/94‑1 (MQ=60)

                                                         AATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGG                                      >  SRR4302537.3205934/1‑94 (MQ=60)

                                                         AATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGG                                      <  SRR4302537.490970/94‑1 (MQ=60)

                                                         AATTTTATTAATTGCAGCATGTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGG                                      <  SRR4302537.2976589/94‑1 (MQ=60)

                                                          ATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGC                                     >  SRR4302537.1450062/1‑94 (MQ=60)

                                                          ATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGC                                     >  SRR4302537.5097484/1‑94 (MQ=60)

                                                          ATTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGC                                     >  SRR4302537.4412700/1‑94 (MQ=60)

                                                           TTTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCA                                    >  SRR4302537.1480140/1‑94 (MQ=60)

                                                            TTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAA                                   >  SRR4302537.1566675/1‑94 (MQ=60)

                                                            TTTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAA                                   <  SRR4302537.5255950/94‑1 (MQ=60)

                                                             TTATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAAT                                  >  SRR4302537.974837/1‑94 (MQ=60)

                                                              TATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATA                                 <  SRR4302537.4776818/94‑1 (MQ=60)

                                                              TATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATA                                 <  SRR4302537.3643371/94‑1 (MQ=60)

                                                               ATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAA                                >  SRR4302537.522899/1‑94 (MQ=60)

                                                               ATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAA                                >  SRR4302537.164721/1‑94 (MQ=60)

                                                               ATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAA                                >  SRR4302537.2770289/1‑94 (MQ=60)

                                                               ATTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAA                                >  SRR4302537.4290734/1‑94 (MQ=60)

                                                                TTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAA                               >  SRR4302537.3957436/1‑94 (MQ=60)

                                                                TTAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAA                               <  SRR4302537.4185260/94‑1 (MQ=60)

                                                                 TAATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAG                              >  SRR4302537.4175451/1‑94 (MQ=60)

                                                                  AATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGC                             >  SRR4302537.44918/1‑94 (MQ=60)

                                                                  AATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGC                             >  SRR4302537.4833395/1‑94 (MQ=60)

                                                                   ATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCC                            >  SRR4302537.5006830/1‑94 (MQ=60)

                                                                   ATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCC                            >  SRR4302537.5001076/1‑94 (MQ=60)

                                                                   ATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCC                            >  SRR4302537.2425764/1‑94 (MQ=60)

                                                                   ATTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCC                            >  SRR4302537.122803/1‑94 (MQ=60)

                                                                    TTGCAGCATTTCGCGCATTAACTGCATGACCCCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCC                           <  SRR4302537.5299990/94‑1 (MQ=60)

                                                                    TTGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCC                           <  SRR4302537.5246179/94‑1 (MQ=60)

                                                                     TGCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCA                          >  SRR4302537.3993902/1‑94 (MQ=60)

                                                                      GCAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCAC                         <  SRR4302537.5945507/94‑1 (MQ=60)

                                                                       CAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACT                        >  SRR4302537.3228162/1‑94 (MQ=60)

                                                                       CAGCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACT                        >  SRR4302537.5488614/1‑94 (MQ=60)

                                                                         GCATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTC                      >  SRR4302537.864928/1‑94 (MQ=60)

                                                                          CATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCA                     >  SRR4302537.4282474/1‑94 (MQ=60)

                                                                          CATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCA                     >  SRR4302537.2893685/1‑94 (MQ=60)

                                                                          CATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCA                     <  SRR4302537.6363911/94‑1 (MQ=60)

                                                                          CATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCA                     <  SRR4302537.1264029/94‑1 (MQ=60)

                                                                          CATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCA                     >  SRR4302537.3533426/1‑94 (MQ=60)

                                                                           ATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCAT                    <  SRR4302537.379368/94‑1 (MQ=60)

                                                                           ATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCAT                    <  SRR4302537.5582178/94‑1 (MQ=60)

                                                                           ATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCAT                    >  SRR4302537.423596/1‑94 (MQ=60)

                                                                           ATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCAT                    >  SRR4302537.2152941/1‑94 (MQ=60)

                                                                           ATTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCAT                    >  SRR4302537.2587188/1‑94 (MQ=60)

                                                                            TTTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATC                   >  SRR4302537.3782661/1‑94 (MQ=60)

                                                                             TTCGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCT                  <  SRR4302537.1280855/94‑1 (MQ=60)

                                                                               TGCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTT                <  SRR4302537.2007939/94‑1 (MQ=60)

                                                                                GCGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTAATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTC               <  SRR4302537.990514/94‑1 (MQ=60)

                                                                                 CGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCG              >  SRR4302537.667617/1‑94 (MQ=60)

                                                                                 CGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCG              >  SRR4302537.1880147/1‑94 (MQ=60)

                                                                                 CGCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCG              <  SRR4302537.2834747/94‑1 (MQ=60)

                                                                                  GCATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGG             >  SRR4302537.4836666/1‑94 (MQ=60)

                                                                                   CATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGT            >  SRR4302537.492940/1‑94 (MQ=60)

                                                                                   CATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGT            <  SRR4302537.1796055/94‑1 (MQ=60)

                                                                                    ATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTA           >  SRR4302537.26804/1‑94 (MQ=60)

                                                                                    ATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTA           >  SRR4302537.5490003/1‑94 (MQ=60)

                                                                                    ATTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTA           >  SRR4302537.3404685/1‑94 (MQ=60)

                                                                                     TTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAA          <  SRR4302537.5540143/94‑1 (MQ=60)

                                                                                     TTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAA          <  SRR4302537.4376026/94‑1 (MQ=60)

                                                                                     TTAACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAA          >  SRR4302537.3922361/1‑94 (MQ=60)

                                                                                       AACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACT        >  SRR4302537.2685256/1‑94 (MQ=60)

                                                                                       AACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACT        >  SRR4302537.3080079/1‑94 (MQ=60)

                                                                                        ACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTG       >  SRR4302537.2883472/1‑94 (MQ=60)

                                                                                        ACTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTG       >  SRR4302537.761971/1‑94 (MQ=60)

                                                                                         CTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGC      <  SRR4302537.6158871/94‑1 (MQ=60)

                                                                                         CTGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGC      >  SRR4302537.1666202/1‑94 (MQ=60)

                                                                                          TGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCA     <  SRR4302537.1087600/94‑1 (MQ=60)

                                                                                          TGCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCA     <  SRR4302537.5957439/94‑1 (MQ=60)

                                                                                           GCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCAC    <  SRR4302537.6522366/94‑1 (MQ=60)

                                                                                           GCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCAC    <  SRR4302537.1651459/94‑1 (MQ=60)

                                                                                           GCATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCAC    <  SRR4302537.5257278/94‑1 (MQ=60)

                                                                                            CATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACG   <  SRR4302537.2297431/94‑1 (MQ=60)

                                                                                             ATGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGC  >  SRR4302537.3840426/1‑94 (MQ=60)

TGTGTAACCAGTCGCTGATAACTCAAGCTTTCTTCCTGGTAATTAAGGCTGAACTGAAATTTTATTAATTGCAGCATTTCGCGCATTAACTGCGTGACACCTGCAACATCCTCCATATTTCCGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGC  >  NC_000913/3903573‑3903759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`