Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,907,130 G→A F299F (TTC→TTT)  pstC ← PstC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,907,1300GA95.9% 847.6 / 12.1 244F299F (TTC→TTT) pstCPstC
Reads supporting (aligned to +/- strand):  ref base G (7/3);  new base A (126/108);  total (133/111)
Fisher's exact test for biased strand distribution p-value = 3.54e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.77e-01

Only 100 of 254 total aligned reads displayed.

CAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCAG  >  NC_000913/3907040‑3907221
                                                                                          |                                                                                           
cAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATaaa                                                                                           <  2:5774279/93‑1 (MQ=255)
cAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATaaa                                                                                           <  2:5558005/93‑1 (MQ=255)
cAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATaaa                                                                                           <  1:4663673/93‑1 (MQ=255)
  gTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAgg                                                                                         >  1:4538338/1‑93 (MQ=255)
  gTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATCAAgg                                                                                         >  1:5970028/1‑93 (MQ=255)
  gTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAgg                                                                                         >  1:5380968/1‑93 (MQ=255)
   tGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGt                                                                                        <  2:6444954/93‑1 (MQ=255)
    ggTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTa                                                                                       >  1:33368/1‑93 (MQ=255)
     gTTTTCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTaa                                                                                      <  1:3625593/93‑1 (MQ=255)
     gTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTaa                                                                                      >  1:3705389/1‑93 (MQ=255)
     gTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTaa                                                                                      >  2:6359038/1‑93 (MQ=255)
       ttGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATc                                                                                    >  1:1061116/1‑93 (MQ=255)
       ttGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATc                                                                                    <  1:4504621/93‑1 (MQ=255)
       ttGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATc                                                                                    <  1:176490/93‑1 (MQ=255)
        tGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATca                                                                                   >  2:6057286/1‑93 (MQ=255)
          cATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATcaca                                                                                 >  2:4015939/1‑93 (MQ=255)
           aTTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACaa                                                                                >  2:4060242/1‑93 (MQ=255)
            tttCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACaaa                                                                               >  1:5082911/1‑93 (MQ=255)
            tttCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACaaa                                                                               >  2:4611186/1‑93 (MQ=255)
             ttCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAAc                                                                              <  2:3201872/93‑1 (MQ=255)
             ttCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAAc                                                                              >  2:3831460/1‑93 (MQ=255)
              tCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACa                                                                             <  1:4084261/93‑1 (MQ=255)
              tCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACa                                                                             <  1:3471232/93‑1 (MQ=255)
               cAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAg                                                                            <  2:3237636/93‑1 (MQ=255)
                 aCCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGa                                                                          >  2:504589/1‑93 (MQ=255)
                 aCCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGa                                                                          >  2:1017698/1‑93 (MQ=255)
                  ccATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGAt                                                                         >  2:3716492/1‑93 (MQ=255)
                   cATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATc                                                                        <  2:2508727/93‑1 (MQ=255)
                    aTAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCa                                                                       <  1:3936077/93‑1 (MQ=255)
                    aTAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCa                                                                       <  2:4352814/93‑1 (MQ=255)
                    aTAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCa                                                                       <  2:5081678/93‑1 (MQ=255)
                    aTAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCa                                                                       <  2:3483656/93‑1 (MQ=255)
                     tAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAGGTAATCACAAACAGGATCAg                                                                      >  2:2749800/1‑93 (MQ=255)
                        ccATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAACGTAATCACAAACAGGCTCAGGcc                                                                   >  2:5611893/1‑93 (MQ=255)
                         cATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGccc                                                                  >  1:3049572/1‑93 (MQ=255)
                          aTTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCa                                                                 >  1:2608953/1‑93 (MQ=255)
                          aTTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCa                                                                 <  2:2935546/93‑1 (MQ=255)
                           ttAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAg                                                                >  1:5141524/1‑93 (MQ=255)
                               cGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTcc                                                            <  2:2641288/93‑1 (MQ=255)
                                  gCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATc                                                         <  2:2867615/93‑1 (MQ=255)
                                  gCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATc                                                         <  1:4137284/93‑1 (MQ=255)
                                     cccTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGt                                                      <  2:1457379/93‑1 (MQ=255)
                                     cccTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGt                                                      >  1:4792540/1‑93 (MQ=255)
                                       cTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCCTCAGTGc                                                    >  1:421106/1‑93 (MQ=255)
                                       cTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGc                                                    <  2:5306847/93‑1 (MQ=255)
                                         cATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCgg                                                  <  2:5787800/93‑1 (MQ=255)
                                           ttCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCa                                                >  2:339583/1‑93 (MQ=255)
                                            tCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCaa                                               <  2:297163/93‑1 (MQ=255)
                                              ttAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACg                                             >  1:2117231/1‑93 (MQ=255)
                                              ttAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACg                                             >  1:6099392/1‑93 (MQ=255)
                                              ttAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACg                                             >  1:321007/1‑93 (MQ=255)
                                              ttAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACg                                             <  1:2417858/93‑1 (MQ=255)
                                              ttAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACg                                             >  2:4497726/1‑93 (MQ=255)
                                              ttAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACg                                             >  2:3765779/1‑93 (MQ=255)
                                               tAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGt                                            >  2:2567977/1‑93 (MQ=255)
                                                  ccAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCa                                         <  1:6431346/93‑1 (MQ=255)
                                                  ccAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCa                                         <  2:3546965/93‑1 (MQ=255)
                                                   cAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAg                                        >  2:4946776/1‑93 (MQ=255)
                                                     ggCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGAc                                      >  2:9878/1‑93 (MQ=255)
                                                     ggCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGAc                                      <  1:3243741/93‑1 (MQ=255)
                                                     ggCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGAc                                      <  2:1784278/93‑1 (MQ=255)
                                                      gcgcATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGAcc                                     >  2:4714199/1‑93 (MQ=255)
                                                      gcgcATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGAcc                                     >  2:3024704/1‑93 (MQ=255)
                                                       cgcATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCATGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCg                                    <  2:2088511/93‑1 (MQ=255)
                                                        gcATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCgg                                   >  1:4707907/1‑93 (MQ=255)
                                                         cATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGa                                  <  2:5234487/93‑1 (MQ=255)
                                                          aTAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCACTGCGGCAACGTGCAGAGCGGAt                                 >  2:6259089/1‑93 (MQ=255)
                                                            aaTCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttc                               >  2:1189601/1‑93 (MQ=255)
                                                            aaTCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttc                               <  2:1573517/93‑1 (MQ=255)
                                                             aTCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTACAGACCGGAttcc                              >  1:52690/1‑93 (MQ=255)
                                                              tCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccg                             <  2:6143843/93‑1 (MQ=255)
                                                               cATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgc                            <  1:1872872/93‑1 (MQ=255)
                                                               cATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgc                            <  1:2919153/93‑1 (MQ=255)
                                                               cATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgc                            <  1:3913921/93‑1 (MQ=255)
                                                                aTAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgct                           >  1:2067635/1‑93 (MQ=255)
                                                                aTAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgct                           >  1:3076400/1‑93 (MQ=255)
                                                                  aaaCTTCGAGGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgcttc                         <  1:1315364/93‑1 (MQ=255)
                                                                   aaCTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgcttcc                        >  2:239893/1‑93 (MQ=255)
                                                                    aCTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgcttccg                       >  1:1017388/1‑93 (MQ=255)
                                                                    aCTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgcttccg                       >  1:2785483/1‑93 (MQ=255)
                                                                     cTTCGATGCGGCGAGGACGATGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgcttccgc                      >  1:4935081/1‑93 (MQ=255)
                                                                     cTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAttccgcttccgc                      <  1:941940/93‑1 (MQ=255)
                                                                       tCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCaa                    >  1:1235183/1‑93 (MQ=255)
                                                                        cGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCaaa                   <  2:3632677/93‑1 (MQ=255)
                                                                        cGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCaaa                   <  2:1404077/93‑1 (MQ=255)
                                                                         gATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAt                  >  1:4373886/1‑93 (MQ=255)
                                                                         gATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAt                  >  2:845515/1‑93 (MQ=255)
                                                                         gATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAt                  >  1:1667654/1‑93 (MQ=255)
                                                                          aTGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAtt                 >  1:5624244/1‑93 (MQ=255)
                                                                           tGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAttc                >  1:238392/1‑93 (MQ=255)
                                                                              ggcgAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAttcgtt             <  1:5774123/93‑1 (MQ=255)
                                                                               gcgAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAttcgttc            >  1:845395/1‑93 (MQ=255)
                                                                               gcgAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAttcgttc            >  2:2124796/1‑93 (MQ=255)
                                                                                cgAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAttcgttcg           <  1:2567977/93‑1 (MQ=255)
                                                                                cgAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAttcgttcg           <  1:4940862/93‑1 (MQ=255)
                                                                                   ggACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCa        <  1:1878768/93‑1 (MQ=255)
                                                                                      cGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAgcg     >  1:1216243/1‑93 (MQ=255)
                                                                                       gATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAgcgc    >  1:2257413/1‑93 (MQ=255)
                                                                                       gATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAgcgc    >  1:3388547/1‑93 (MQ=255)
                                                                                         tGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCag  >  1:1446675/1‑93 (MQ=255)
                                                                                          |                                                                                           
CAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCAG  >  NC_000913/3907040‑3907221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCAGAG  >  NC_000913/3907037‑3907223
                                                                                             |                                                                                             
CCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATA                                                                                               >  SRR4302537.44146/1‑94 (MQ=60)
 CGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAA                                                                                              >  SRR4302537.1934195/1‑94 (MQ=60)
 CGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTAATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAA                                                                                              >  SRR4302537.4592256/1‑94 (MQ=60)
  GCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAA                                                                                             <  SRR4302537.5263022/94‑1 (MQ=60)
   CAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAG                                                                                            <  SRR4302537.4695905/94‑1 (MQ=60)
   CAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAG                                                                                            <  SRR4302537.4115468/94‑1 (MQ=60)
    AGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAGG                                                                                           >  SRR4302537.4569757/1‑94 (MQ=60)
    AGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATCAAGG                                                                                           >  SRR4302537.6011006/1‑94 (MQ=60)
    AGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGG                                                                                           >  SRR4302537.5417766/1‑94 (MQ=60)
      TGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTA                                                                                         <  SRR4302537.4795880/94‑1 (MQ=60)
      TGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTA                                                                                         <  SRR4302537.5296021/94‑1 (MQ=60)
      TGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTA                                                                                         >  SRR4302537.33633/1‑94 (MQ=60)
       GGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAA                                                                                        >  SRR4302537.4233961/1‑94 (MQ=60)
       GGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAA                                                                                        >  SRR4302537.3731448/1‑94 (MQ=60)
        GTTTTCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAAT                                                                                       <  SRR4302537.3651148/94‑1 (MQ=60)
        GTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAAT                                                                                       >  SRR4302537.477390/1‑94 (MQ=60)
        GTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAAT                                                                                       >  SRR4302537.6120963/1‑94 (MQ=60)
         TTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATC                                                                                      <  SRR4302537.3436869/94‑1 (MQ=60)
         TTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATC                                                                                      >  SRR4302537.1068437/1‑94 (MQ=60)
         TTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGCAATC                                                                                      >  SRR4302537.6156334/1‑94 (MQ=60)
          TTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAGGTAATCA                                                                                     <  SRR4302537.5010541/94‑1 (MQ=60)
          TTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCA                                                                                     <  SRR4302537.177741/94‑1 (MQ=60)
          TTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCA                                                                                     <  SRR4302537.4535772/94‑1 (MQ=60)
          TTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCA                                                                                     >  SRR4302537.3308284/1‑94 (MQ=60)
             CATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAA                                                                                  >  SRR4302537.4554564/1‑94 (MQ=60)
              ATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAA                                                                                 >  SRR4302537.5117896/1‑94 (MQ=60)
                TTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACA                                                                               >  SRR4302537.3506121/1‑94 (MQ=60)
                 TCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAG                                                                              >  SRR4302537.5587336/1‑94 (MQ=60)
                 TCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAG                                                                              <  SRR4302537.4112774/94‑1 (MQ=60)
                 TCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAG                                                                              <  SRR4302537.3495792/94‑1 (MQ=60)
                  CAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGG                                                                             >  SRR4302537.5199498/1‑94 (MQ=60)
                    ACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGAT                                                                           <  SRR4302537.2359731/94‑1 (MQ=60)
                    ACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGAT                                                                           <  SRR4302537.3522990/94‑1 (MQ=60)
                    ACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGAT                                                                           >  SRR4302537.3405751/1‑94 (MQ=60)
                    ACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGAT                                                                           >  SRR4302537.6265922/1‑94 (MQ=60)
                    ACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGAT                                                                           <  SRR4302537.1696095/94‑1 (MQ=60)
                     CCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATA                                                                          >  SRR4302537.1634030/1‑94 (MQ=60)
                      CATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCA                                                                         <  SRR4302537.3219856/94‑1 (MQ=60)
                      CATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCA                                                                         <  SRR4302537.5637561/94‑1 (MQ=60)
                       ATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAG                                                                        <  SRR4302537.3963588/94‑1 (MQ=60)
                           CCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCC                                                                    >  SRR4302537.3070822/1‑94 (MQ=60)
                            CATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGGCCA                                                                   >  SRR4302537.2739502/1‑94 (MQ=60)
                            CATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCA                                                                   >  SRR4302537.2627199/1‑94 (MQ=60)
                             ATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAG                                                                  >  SRR4302537.5176949/1‑94 (MQ=60)
                               TAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTT                                                                <  SRR4302537.3992867/94‑1 (MQ=60)
                               TAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTT                                                                <  SRR4302537.4021426/94‑1 (MQ=60)
                                AGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTC                                                               >  SRR4302537.1982864/1‑94 (MQ=60)
                                  CGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCA                                                             >  SRR4302537.6007010/1‑94 (MQ=60)
                                   GTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCAT                                                            <  SRR4302537.2490585/94‑1 (MQ=60)
                                     GCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCA                                                          <  SRR4302537.3658973/94‑1 (MQ=60)
                                     GCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCA                                                          <  SRR4302537.4166145/94‑1 (MQ=60)
                                     GCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCA                                                          <  SRR4302537.5994653/94‑1 (MQ=60)
                                      CCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAG                                                         >  SRR4302537.230127/1‑94 (MQ=60)
                                       CCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGT                                                        <  SRR4302537.5057520/94‑1 (MQ=60)
                                       CCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGT                                                        >  SRR4302537.1279998/1‑94 (MQ=60)
                                       CCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGT                                                        >  SRR4302537.4825617/1‑94 (MQ=60)
                                        CCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTG                                                       >  SRR4302537.1877329/1‑94 (MQ=60)
                                         CCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCCTCAGTGC                                                      >  SRR4302537.424024/1‑94 (MQ=60)
                                          CTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCG                                                     <  SRR4302537.4522526/94‑1 (MQ=60)
                                             ATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCA                                                  >  SRR4302537.4525531/1‑94 (MQ=60)
                                             ATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCAAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCA                                                  <  SRR4302537.1816318/94‑1 (MQ=60)
                                              TTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAA                                                 >  SRR4302537.1131331/1‑94 (MQ=60)
                                              TTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAA                                                 >  SRR4302537.4729874/1‑94 (MQ=60)
                                               TCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAAC                                                >  SRR4302537.828453/1‑94 (MQ=60)
                                                CTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACG                                               >  SRR4302537.2132145/1‑94 (MQ=60)
                                                CTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACG                                               >  SRR4302537.6141304/1‑94 (MQ=60)
                                                CTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACG                                               >  SRR4302537.323230/1‑94 (MQ=60)
                                                CTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGCAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACG                                               >  SRR4302537.463689/1‑94 (MQ=60)
                                                 TTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGT                                              <  SRR4302537.216863/94‑1 (MQ=60)
                                                 TTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGT                                              <  SRR4302537.2434897/94‑1 (MQ=60)
                                                  TAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTG                                             >  SRR4302537.4304942/1‑94 (MQ=60)
                                                  TAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTG                                             >  SRR4302537.3433283/1‑94 (MQ=60)
                                                  TAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTG                                             <  SRR4302537.2115831/94‑1 (MQ=60)
                                                   AGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGC                                            <  SRR4302537.2461835/94‑1 (MQ=60)
                                                    GCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCA                                           <  SRR4302537.460527/94‑1 (MQ=60)
                                                    GCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCA                                           <  SRR4302537.1001974/94‑1 (MQ=60)
                                                     CCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAG                                          <  SRR4302537.6475031/94‑1 (MQ=60)
                                                        GGCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACC                                       <  SRR4302537.3266603/94‑1 (MQ=60)
                                                         GCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCG                                      <  SRR4302537.3871220/94‑1 (MQ=60)
                                                         GCGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCG                                      <  SRR4302537.2988653/94‑1 (MQ=60)
                                                          CGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGG                                     >  SRR4302537.4740480/1‑94 (MQ=60)
                                                          CGCATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGG                                     >  SRR4302537.3238736/1‑94 (MQ=60)
                                                            CATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAT                                   <  SRR4302537.1233980/94‑1 (MQ=60)
                                                            CATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGAT                                   <  SRR4302537.5157394/94‑1 (MQ=60)
                                                             ATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATT                                  >  SRR4302537.2627097/1‑94 (MQ=60)
                                                             ATAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATT                                  <  SRR4302537.2950017/94‑1 (MQ=60)
                                                              TAATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTC                                 >  SRR4302537.5737863/1‑94 (MQ=60)
                                                               AATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCC                                >  SRR4302537.2014698/1‑94 (MQ=60)
                                                               AATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCC                                >  SRR4302537.3772901/1‑94 (MQ=60)
                                                               AATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTACAGACCGGATTCC                                >  SRR4302537.53078/1‑94 (MQ=60)
                                                                ATCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCG                               >  SRR4302537.3134694/1‑94 (MQ=60)
                                                                 TCATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGC                              >  SRR4302537.3089827/1‑94 (MQ=60)
                                                                  CATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCT                             <  SRR4302537.3941281/94‑1 (MQ=60)
                                                                  CATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCT                             >  SRR4302537.2082161/1‑94 (MQ=60)
                                                                  CATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCT                             >  SRR4302537.3097829/1‑94 (MQ=60)
                                                                  CATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCT                             >  SRR4302537.1042885/1‑94 (MQ=60)
                                                                  CATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCT                             <  SRR4302537.3947581/94‑1 (MQ=60)
                                                                  CATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCT                             <  SRR4302537.1885904/94‑1 (MQ=60)
                                                                  CATAAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCT                             <  SRR4302537.2939668/94‑1 (MQ=60)
                                                                     AAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCC                          <  SRR4302537.1579880/94‑1 (MQ=60)
                                                                     AAACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCC                          >  SRR4302537.701817/1‑94 (MQ=60)
                                                                     AAACTTCGAGGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCC                          <  SRR4302537.1324526/94‑1 (MQ=60)
                                                                      AACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCG                         <  SRR4302537.855893/94‑1 (MQ=60)
                                                                      AACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCG                         >  SRR4302537.1024391/1‑94 (MQ=60)
                                                                      AACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCG                         >  SRR4302537.3308219/1‑94 (MQ=60)
                                                                      AACTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCG                         >  SRR4302537.2804956/1‑94 (MQ=60)
                                                                       ACTTCGATGCGGCGAGGACGATGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGC                        >  SRR4302537.4969119/1‑94 (MQ=60)
                                                                        CTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCA                       >  SRR4302537.970229/1‑94 (MQ=60)
                                                                        CTTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCA                       <  SRR4302537.948437/94‑1 (MQ=60)
                                                                         TTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAA                      >  SRR4302537.494457/1‑94 (MQ=60)
                                                                         TTCGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAA                      >  SRR4302537.1243771/1‑94 (MQ=60)
                                                                           CGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAT                    >  SRR4302537.1679334/1‑94 (MQ=60)
                                                                           CGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAT                    >  SRR4302537.2870440/1‑94 (MQ=60)
                                                                           CGATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAAT                    >  SRR4302537.4404100/1‑94 (MQ=60)
                                                                            GATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATT                   <  SRR4302537.1888/94‑1 (MQ=60)
                                                                            GATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATT                   >  SRR4302537.5662705/1‑94 (MQ=60)
                                                                            GATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATT                   <  SRR4302537.2767957/94‑1 (MQ=60)
                                                                             GTGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTC                  <  SRR4302537.4214847/94‑1 (MQ=60)
                                                                             ATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTC                  >  SRR4302537.240080/1‑94 (MQ=60)
                                                                             ATGCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTC                  <  SRR4302537.1243787/94‑1 (MQ=60)
                                                                               GCGGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGT                <  SRR4302537.4969874/94‑1 (MQ=60)
                                                                                 GGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTC              >  SRR4302537.851188/1‑94 (MQ=60)
                                                                                 GGCGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTC              <  SRR4302537.5813699/94‑1 (MQ=60)
                                                                                   CGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGC            <  SRR4302537.2585968/94‑1 (MQ=60)
                                                                                   CGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGC            <  SRR4302537.4974935/94‑1 (MQ=60)
                                                                                   CGAGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGC            >  SRR4302537.1381730/1‑94 (MQ=60)
                                                                                     AGGACGATCAAGGCAATCAGAAACACGATCAGGCCCAGTTCCATCAGTGCGGCAACGggccgatcggcttacgcttccgcgaatttgtttctcg          >  SRR4302537.5040891/1‑57 (MQ=45)
                                                                                     AGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCA          >  SRR4302537.4943737/1‑94 (MQ=60)
                                                                                     AGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCA          <  SRR4302537.2418966/94‑1 (MQ=60)
                                                                                     AGGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATT‑CGCTTCCGCAAATTCGTTCGCCAG         >  SRR4302537.5329813/1‑94 (MQ=60)
                                                                                      GGACTATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAG         <  SRR4302537.1094185/94‑1 (MQ=60)
                                                                                      GGACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAG         <  SRR4302537.1891835/94‑1 (MQ=60)
                                                                                        ACGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCG       >  SRR4302537.1224701/1‑94 (MQ=60)
                                                                                         CGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGC      >  SRR4302537.2230113/1‑94 (MQ=60)
                                                                                         CGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGC      >  SRR4302537.2273344/1‑94 (MQ=60)
                                                                                         CGATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGC      >  SRR4302537.3412547/1‑94 (MQ=60)
                                                                                           ATGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCAG    >  SRR4302537.1456755/1‑94 (MQ=60)
                                                                                           ATAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCAG    >  SRR4302537.2731985/1‑94 (MQ=60)
                                                                                            TAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCAGA   <  SRR4302537.6061524/94‑1 (MQ=60)
                                                                                            TAAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCAGA   >  SRR4302537.382506/1‑94 (MQ=60)
                                                                                             AAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCAGAG  <  SRR4302537.3639059/94‑1 (MQ=60)
                                                                                             AAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCAGAG  >  SRR4302537.1798305/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCCTCATTCTTAGCCAGGCGCATAATCATAAACTTCGATGCGGCGAGGACGATGAAGGTAATCACAAACAGGATCAGGCCCAGTTCCATCAGTGCGGCAACGTGCAGACCGGATTCCGCTTCCGCAAATTCGTTCGCCAGCGCAGAG  >  NC_000913/3907037‑3907223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑