Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,923,716	A→G	I123T (ATC→ACC)	mioC ←	MioC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,923,716	0	A	G	99.6%	935.7 / NA	265	I123T (ATC→ACC)	mioC	MioC
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (140/124); minor base T (0/1); total (140/125)
Fisher's exact test for biased strand distribution p-value = 4.72e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 270 total aligned reads displayed.

CACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGATCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCA  >  NC_000913/3923626‑3923805

 aCGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCt                                                                                        <  2:1300677/93‑1 (MQ=255)

  cGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCtt                                                                                       >  1:3487623/1‑93 (MQ=255)

  cGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCtt                                                                                       >  1:2137072/1‑93 (MQ=255)

  cGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCtt                                                                                       <  1:6199273/93‑1 (MQ=255)

   gATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTc                                                                                      <  2:6260945/93‑1 (MQ=255)

   gATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTc                                                                                      <  2:5524635/93‑1 (MQ=255)

   gATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTc                                                                                      <  1:976950/93‑1 (MQ=255)

    aTCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCa                                                                                     <  2:5299384/93‑1 (MQ=255)

     tCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAg                                                                                    <  1:2257322/93‑1 (MQ=255)

       tGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAgtg                                                                                  >  1:5751632/1‑93 (MQ=255)

       tGTATACTTA‑TTGAGTAAATTAACCCACGATCCCAGCCACCCCTCCCCCCGATCTTCCGGAATGTCGTGAACAAGAATGTTGGGCTTCAgtgt                                                                                 >  2:3613712/1‑93 (MQ=255)

        gTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAgtgt                                                                                 <  1:1644528/93‑1 (MQ=255)

        gTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAgtgt                                                                                 >  1:3530311/1‑93 (MQ=255)

        gTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAgtgt                                                                                 <  1:642872/93‑1 (MQ=255)

          ataCTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGttt                                                                               <  1:4042268/93‑1 (MQ=255)

          ataCTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGttt                                                                               >  1:4425377/1‑93 (MQ=255)

          ataCTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGttt                                                                               >  2:1676822/1‑93 (MQ=255)

          ataCTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGttt                                                                               >  2:2692840/1‑93 (MQ=255)

          ataCTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGttt                                                                               >  2:4206566/1‑93 (MQ=255)

           taCTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTc                                                                              <  1:1836707/93‑1 (MQ=255)

             cTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGc                                                                            >  2:2120291/1‑93 (MQ=255)

              ttATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGcc                                                                           >  2:4139557/1‑93 (MQ=255)

              ttATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGcc                                                                           >  2:496018/1‑93 (MQ=255)

              ttATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGcc                                                                           >  2:852315/1‑93 (MQ=255)

                   tGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCctgtct                                                                      <  2:1989522/93‑1 (MQ=255)

                    gAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCctgtctg                                                                     <  2:6170768/93‑1 (MQ=255)

                    gAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCctgtctg                                                                     >  1:5784860/1‑93 (MQ=255)

                     aGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCctgtctgt                                                                    >  1:2425300/1‑93 (MQ=255)

                      gTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGtt                                                                   <  2:3402175/93‑1 (MQ=255)

                      gTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGtt                                                                   <  2:5078417/93‑1 (MQ=255)

                       tAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGttt                                                                  <  2:4463732/93‑1 (MQ=255)

                       tAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGttt                                                                  >  1:3632401/1‑93 (MQ=255)

                        aaaTTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGtttt                                                                 <  2:1845129/93‑1 (MQ=255)

                         aaTTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTg                                                                <  2:449861/93‑1 (MQ=255)

                           ttAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCa                                                              >  1:4099955/1‑93 (MQ=255)

                            tAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCAc                                                             <  2:3764172/93‑1 (MQ=255)

                              aCCCACGCTCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCg                                                           >  2:2884662/1‑93 (MQ=255)

                              aCCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCg                                                           <  2:6470893/93‑1 (MQ=255)

                               cccACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCgg                                                          >  2:669871/1‑93 (MQ=255)

                               cccACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCgg                                                          >  1:5248924/1‑93 (MQ=255)

                                ccACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGa                                                         >  1:5945145/1‑93 (MQ=255)

                                ccACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGa                                                         >  1:2717844/1‑93 (MQ=255)

                                 cACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGaa                                                        <  2:5756853/93‑1 (MQ=255)

                                   cGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAAtt                                                      >  1:4925085/1‑93 (MQ=255)

                                     aTCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAAtttt                                                    >  2:224088/1‑93 (MQ=255)

                                        ccAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGa                                                 >  2:4414715/1‑93 (MQ=255)

                                        ccAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGa                                                 >  2:4852452/1‑93 (MQ=255)

                                        ccAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGa                                                 >  2:1196140/1‑93 (MQ=255)

                                         cAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAg                                                >  1:1177639/1‑93 (MQ=255)

                                          aGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGt                                               >  2:2979296/1‑93 (MQ=255)

                                          aGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGt                                               >  1:5627084/1‑93 (MQ=255)

                                           gCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGtt                                              >  2:5590716/1‑93 (MQ=255)

                                           gCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGtt                                              >  1:1360848/1‑93 (MQ=255)

                                           gCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGtt                                              <  1:1976378/93‑1 (MQ=255)

                                           gCCATTCTTCTGCCGGATCTTCCGGAACGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGtt                                              <  1:5969660/93‑1 (MQ=255)

                                            ccATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTc                                             <  1:5680033/93‑1 (MQ=255)

                                             cATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCt                                            <  1:2818045/93‑1 (MQ=255)

                                             cATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCt                                            >  1:881943/1‑93 (MQ=255)

                                             cATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCt                                            >  1:5503338/1‑93 (MQ=255)

                                               ttcttcttcCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGc                                          >  2:5738090/1‑93 (MQ=255)

                                               ttcttcTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGc                                          >  1:5437967/1‑93 (MQ=255)

                                                 cttctGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCt                                        <  2:4671051/93‑1 (MQ=255)

                                                      gCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGt                                   >  1:4782773/1‑93 (MQ=255)

                                                        cGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGttt                                 >  2:6064460/1‑93 (MQ=255)

                                                         ggATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTa                                <  2:6218453/93‑1 (MQ=255)

                                                         ggATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTa                                <  1:3927892/93‑1 (MQ=255)

                                                         ggATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTa                                <  1:3106727/93‑1 (MQ=255)

                                                         ggATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTa                                <  2:2941489/93‑1 (MQ=255)

                                                          gATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTAt                               >  1:1069839/1‑93 (MQ=255)

                                                          gATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTAt                               <  2:2141588/93‑1 (MQ=255)

                                                          gATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTAt                               >  2:2839153/1‑93 (MQ=255)

                                                           aTCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATc                              <  2:5471098/93‑1 (MQ=255)

                                                           aTCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATc                              <  2:3272932/93‑1 (MQ=255)

                                                            tCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCg                             >  2:5101973/1‑93 (MQ=255)

                                                              ttCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGAt                           <  1:1663505/93‑1 (MQ=255)

                                                              ttCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGAt                           >  1:1681922/1‑93 (MQ=255)

                                                               tCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATa                          <  2:147714/93‑1 (MQ=255)

                                                               tCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATa                          >  2:243740/1‑93 (MQ=255)

                                                               tCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATa                          <  2:3948180/93‑1 (MQ=255)

                                                                   gAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGccc                      >  2:159773/1‑93 (MQ=255)

                                                                    aaTGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGcccc                     >  1:5598854/1‑93 (MQ=255)

                                                                    aaTGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGcccc                     <  2:5194337/93‑1 (MQ=255)

                                                                      tGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCcac                   >  1:187574/1‑93 (MQ=255)

                                                                      tGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCcac                   <  1:3382195/93‑1 (MQ=255)

                                                                      tGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCcac                   >  1:2498821/1‑93 (MQ=255)

                                                                         cGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACaaa                <  2:3161486/93‑1 (MQ=255)

                                                                            gATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAgg             >  2:3995485/1‑93 (MQ=255)

                                                                            gATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAgg             >  2:4786833/1‑93 (MQ=255)

                                                                            gATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAgg             <  1:6374188/93‑1 (MQ=255)

                                                                              tCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGgtg           >  2:3504268/1‑93 (MQ=255)

                                                                              tCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGgtg           >  2:2489097/1‑93 (MQ=255)

                                                                              tCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGgtg           >  2:5914052/1‑93 (MQ=255)

                                                                                 aGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCa        >  1:5111528/1‑93 (MQ=255)

                                                                                 aGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCa        >  2:2773493/1‑93 (MQ=255)

                                                                                 aGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCa        <  1:3285437/93‑1 (MQ=255)

                                                                                 aGAATGTTGGCCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCa        >  2:3861560/1‑93 (MQ=255)

                                                                                     tGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATAtt    <  2:1523315/93‑1 (MQ=255)

                                                                                      gTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTc   >  1:5435137/1‑93 (MQ=255)

                                                                                      gTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTc   <  2:78088/93‑1 (MQ=255)

                                                                                       ttGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCa  <  1:3225504/93‑1 (MQ=255)

CACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGATCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCA  >  NC_000913/3923626‑3923805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGCACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGATCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGAC  >  NC_000913/3923623‑3923809

TCGCACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGG                                                                                               <  SRR4302537.2938550/94‑1 (MQ=60)

 CGCACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGT                                                                                              >  SRR4302537.892180/1‑94 (MQ=60)

 CGCACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGT                                                                                              <  SRR4302537.2184347/94‑1 (MQ=60)

 CGCACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGT                                                                                              <  SRR4302537.4726302/94‑1 (MQ=60)

 CGCACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGT                                                                                              <  SRR4302537.4733618/94‑1 (MQ=60)

  cggcgatcagttTACTTATTTGAGTAAATTAACCCAGGATCCCATCCATGCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTC                                                                                             <  SRR4302537.2144345/82‑1 (MQ=60)

   CACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCT                                                                                            >  SRR4302537.2513865/1‑94 (MQ=60)

   CACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCT                                                                                            <  SRR4302537.5628365/94‑1 (MQ=60)

   CACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCT                                                                                            >  SRR4302537.1676269/1‑94 (MQ=60)

    ACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTT                                                                                           >  SRR4302537.3512288/1‑94 (MQ=60)

    ACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTT                                                                                           >  SRR4302537.2152118/1‑94 (MQ=60)

     CGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTC                                                                                          >  SRR4302537.2820723/1‑94 (MQ=60)

     CGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTC                                                                                          <  SRR4302537.6241994/94‑1 (MQ=60)

      GATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCA                                                                                         <  SRR4302537.983690/94‑1 (MQ=60)

      GATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCA                                                                                         >  SRR4302537.3531246/1‑94 (MQ=60)

       ATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAG                                                                                        >  SRR4302537.5204609/1‑94 (MQ=60)

        TCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGT                                                                                       <  SRR4302537.2273253/94‑1 (MQ=60)

         CTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTG                                                                                      >  SRR4302537.5791032/1‑94 (MQ=60)

         CTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTG                                                                                      >  SRR4302537.6288369/1‑94 (MQ=60)

          TGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGT                                                                                     >  SRR4302537.1869900/1‑94 (MQ=60)

          TGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGT                                                                                     >  SRR4302537.3555271/1‑94 (MQ=60)

           GTATGCTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTT                                                                                    <  SRR4302537.3137357/94‑1 (MQ=60)

           GTATACTTATTTGAGTAAATTAGCCCGCGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTT                                                                                    <  SRR4302537.857637/94‑1 (MQ=60)

           GTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTT                                                                                    <  SRR4302537.647251/94‑1 (MQ=60)

           GTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTT                                                                                    <  SRR4302537.1656051/94‑1 (MQ=60)

            TATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTT                                                                                   >  SRR4302537.4455942/1‑94 (MQ=60)

            TATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTT                                                                                   >  SRR4302537.20889/1‑94 (MQ=60)

             ATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTC                                                                                  >  SRR4302537.5509039/1‑94 (MQ=60)

             ATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTC                                                                                  >  SRR4302537.2708596/1‑94 (MQ=60)

             ATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTC                                                                                  >  SRR4302537.2239351/1‑94 (MQ=60)

             ATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTC                                                                                  >  SRR4302537.1976984/1‑94 (MQ=60)

             ATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTC                                                                                  <  SRR4302537.4070537/94‑1 (MQ=60)

             ATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTC                                                                                  <  SRR4302537.5175622/94‑1 (MQ=60)

              TACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCG                                                                                 <  SRR4302537.4060629/94‑1 (MQ=60)

              TACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCG                                                                                 <  SRR4302537.447276/94‑1 (MQ=60)

              TACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCG                                                                                 <  SRR4302537.1849490/94‑1 (MQ=60)

                 TTATTTGAGTAAATTAACCCACGATCCCAGCCGTTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCT                                                                              >  SRR4302537.1669335/1‑94 (MQ=60)

                     TTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCT                                                                          <  SRR4302537.5756657/94‑1 (MQ=60)

                      TGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTG                                                                         >  SRR4302537.5824520/1‑94 (MQ=60)

                       GAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGT                                                                        >  SRR4302537.2442392/1‑94 (MQ=60)

                        AGTAAATTACCCCCCCATCCCAGCCATTCTTCTGCCGGATCTTCCGTAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTT                                                                       <  SRR4302537.2261664/94‑1 (MQ=60)

                        AGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTT                                                                       <  SRR4302537.5677875/94‑1 (MQ=60)

                         GTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTT                                                                      >  SRR4302537.3657995/1‑94 (MQ=60)

                         GTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCCTCAGTGTTTCGCCTGTCTGTTT                                                                      >  SRR4302537.3827032/1‑94 (MQ=60)

                            AATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGC                                                                   <  SRR4302537.5741784/94‑1 (MQ=60)

                             ATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCA                                                                  <  SRR4302537.2699090/94‑1 (MQ=60)

                             ATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCA                                                                  >  SRR4302537.4128578/1‑94 (MQ=60)

                              TTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCAC                                                                 <  SRR4302537.6003765/94‑1 (MQ=60)

                              TTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCAC                                                                 <  SRR4302537.5297513/94‑1 (MQ=60)

                              TTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCAC                                                                 <  SRR4302537.4336518/94‑1 (MQ=60)

                                AACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCG                                                               <  SRR4302537.5021919/94‑1 (MQ=60)

                                 ACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGG                                                              >  SRR4302537.5285046/1‑94 (MQ=60)

                                  CCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGA                                                             >  SRR4302537.5985951/1‑94 (MQ=60)

                                  CCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGA                                                             >  SRR4302537.2736824/1‑94 (MQ=60)

                                   CCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAA                                                            >  SRR4302537.2058677/1‑94 (MQ=60)

                                     ACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATT                                                          >  SRR4302537.4959041/1‑94 (MQ=60)

                                     ACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATT                                                          <  SRR4302537.4417846/94‑1 (MQ=60)

                                        ATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTT                                                       <  SRR4302537.3754231/94‑1 (MQ=60)

                                        ATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTT                                                       >  SRR4302537.5558968/1‑94 (MQ=60)

                                          CCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAATAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGAACCGGAATTTTTGC                                                     >  SRR4302537.3491196/1‑94 (MQ=60)

                                          CCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGA                                                     >  SRR4302537.6145866/1‑94 (MQ=60)

                                           CCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAG                                                    >  SRR4302537.1185828/1‑94 (MQ=60)

                                            CAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGT                                                   >  SRR4302537.5665580/1‑94 (MQ=60)

                                            CAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGT                                                   <  SRR4302537.4001047/94‑1 (MQ=60)

                                             AGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGCATGTTGGTCTTCAGGGTTTCGCCTGACTGTTTTGCACCGGAATTTTTGAGGT                                                  >  SRR4302537.112059/1‑94 (MQ=60)

                                             AGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTT                                                  >  SRR4302537.5474501/1‑94 (MQ=60)

                                             AGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTT                                                  >  SRR4302537.1370329/1‑94 (MQ=60)

                                              GCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTC                                                 <  SRR4302537.1990112/94‑1 (MQ=60)

                                              GCCATTCTTCTGCCGGATCTTCCGGAACGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTC                                                 <  SRR4302537.6010634/94‑1 (MQ=60)

                                               CCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCT                                                <  SRR4302537.794221/94‑1 (MQ=60)

                                               CCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCT                                                >  SRR4302537.5540917/1‑94 (MQ=60)

                                               CCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCT                                                <  SRR4302537.5860742/94‑1 (MQ=60)

                                               CCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCT                                                >  SRR4302537.888009/1‑94 (MQ=60)

                                               CCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCT                                                <  SRR4302537.5718888/94‑1 (MQ=60)

                                                CATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTG                                               <  SRR4302537.2837749/94‑1 (MQ=60)

                                                CATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTG                                               <  SRR4302537.3009426/94‑1 (MQ=60)

                                                 ATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGC                                              >  SRR4302537.5475065/1‑94 (MQ=60)

                                                  TTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCC                                             >  SRR4302537.1445111/1‑94 (MQ=60)

                                                   TCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCT                                            <  SRR4302537.931403/94‑1 (MQ=60)

                                                   TCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCT                                            <  SRR4302537.3566496/94‑1 (MQ=60)

                                                    CTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTC                                           <  SRR4302537.353466/94‑1 (MQ=60)

                                                    CTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTC                                           >  SRR4302537.5060116/1‑94 (MQ=60)

                                                    CTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTC                                           >  SRR4302537.233034/1‑94 (MQ=60)

                                                       CTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAG                                        >  SRR4302537.2892241/1‑94 (MQ=60)

                                                        TGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGT                                       <  SRR4302537.1838482/94‑1 (MQ=60)

                                                        TGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGT                                       >  SRR4302537.4815789/1‑94 (MQ=60)

                                                        TGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGT                                       >  SRR4302537.5952386/1‑94 (MQ=60)

                                                          CCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTT                                     <  SRR4302537.1254347/94‑1 (MQ=60)

                                                           CGGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTA                                    <  SRR4302537.3308103/94‑1 (MQ=60)

                                                            GGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTAT                                   >  SRR4302537.3202917/1‑94 (MQ=60)

                                                            GGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTAT                                   >  SRR4302537.1077218/1‑94 (MQ=60)

                                                            GGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTAT                                   >  SRR4302537.1909107/1‑94 (MQ=60)

                                                            GGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTAT                                   <  SRR4302537.3128425/94‑1 (MQ=60)

                                                            GGATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTAT                                   <  SRR4302537.3955337/94‑1 (MQ=60)

                                                             GATCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATC                                  <  SRR4302537.3455586/94‑1 (MQ=60)

                                                               TCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCTCCGGAATTTTTGACTTCTGCCTCGACTTTATCGA                                <  SRR4302537.2172826/94‑1 (MQ=60)

                                                               TCTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGA                                <  SRR4302537.167953/94‑1 (MQ=60)

                                                                CTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGAT                               >  SRR4302537.1693692/1‑94 (MQ=60)

                                                                CTTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGAT                               <  SRR4302537.1791337/94‑1 (MQ=60)

                                                                 TTCCGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATA                              <  SRR4302537.1675162/94‑1 (MQ=60)

                                                                    CGGAATGTCGTGATCAAGAATGTTGTTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCC                           <  SRR4302537.2448000/94‑1 (MQ=60)

                                                                    CGGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCC                           >  SRR4302537.4510427/1‑94 (MQ=60)

                                                                     GGAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCC                          <  SRR4302537.6471034/94‑1 (MQ=60)

                                                                      GAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCC                         >  SRR4302537.1237656/1‑94 (MQ=60)

                                                                      GAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCC                         >  SRR4302537.5637132/1‑94 (MQ=60)

                                                                      GAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCC                         <  SRR4302537.4089716/94‑1 (MQ=60)

                                                                      GAATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCC                         <  SRR4302537.4898590/94‑1 (MQ=60)

                                                                        ATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCAC                       >  SRR4302537.2516404/1‑94 (MQ=60)

                                                                        ATGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCAC                       >  SRR4302537.188905/1‑94 (MQ=60)

                                                                         TGTCGTGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACA                      <  SRR4302537.3406155/94‑1 (MQ=60)

                                                                         TGTCGGGATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACA                      <  SRR4302537.1499585/94‑1 (MQ=60)

                                                                               GATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGT                <  SRR4302537.6417662/94‑1 (MQ=60)

                                                                               GATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGT                <  SRR4302537.3406096/94‑1 (MQ=60)

                                                                                ATCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTG               >  SRR4302537.5813097/1‑94 (MQ=60)

                                                                                 TCAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGT              >  SRR4302537.5644541/1‑94 (MQ=60)

                                                                                  CAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTC             >  SRR4302537.6039732/1‑94 (MQ=60)

                                                                                  CAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTC             >  SRR4302537.5540792/1‑94 (MQ=60)

                                                                                  CAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTC             <  SRR4302537.5988481/94‑1 (MQ=60)

                                                                                  CAAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTC             <  SRR4302537.5708784/94‑1 (MQ=60)

                                                                                   AAGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCA            >  SRR4302537.5146758/1‑94 (MQ=60)

                                                                                    AGAATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCAT           <  SRR4302537.3308644/94‑1 (MQ=60)

                                                                                      AATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATAT         <  SRR4302537.3339905/94‑1 (MQ=60)

                                                                                      AATGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATAT         <  SRR4302537.6448669/94‑1 (MQ=60)

                                                                                        TGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTC       >  SRR4302537.5472212/1‑94 (MQ=60)

                                                                                        TGTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTC       >  SRR4302537.5323123/1‑94 (MQ=60)

                                                                                         GTTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCA      >  SRR4302537.6508164/1‑94 (MQ=60)

                                                                                          TTGGTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCAC     <  SRR4302537.3248201/94‑1 (MQ=60)

                                                                                             GTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGAC  <  SRR4302537.6091297/94‑1 (MQ=60)

                                                                                             GTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGAC  >  SRR4302537.4840751/1‑94 (MQ=60)

                                                                                             GTCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGAC  >  SRR4302537.4656726/1‑94 (MQ=60)

TCGCACGATCTGTATACTTATTTGAGTAAATTAACCCACGATCCCAGCCATTCTTCTGCCGGATCTTCCGGAATGTCGTGATCAAGAATGTTGATCTTCAGTGTTTCGCCTGTCTGTTTTGCACCGGAATTTTTGAGTTCTGCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGAC  >  NC_000913/3923623‑3923809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`