Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,925,285 |
T→C |
V168A (GTA→GCA) |
asnA → |
asparagine synthetase A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,925,285 | 0 | T | C | 97.2%
| 693.4
/ 6.7
| 214 | V168A (GTA→GCA) | asnA | asparagine synthetase A |
| Reads supporting (aligned to +/- strand): ref base T (4/2); new base C (104/104); total (108/106) |
| Fisher's exact test for biased strand distribution p-value = 6.83e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.07e-01 |
Only 100 of 219 total aligned reads displayed.
GGCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGTACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTATTCCTT > NC_000913/3925196‑3925376
|
ggCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGcaca < 2:5967580/93‑1 (MQ=255)
gCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCacac > 2:3341576/1‑93 (MQ=255)
gCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCacac > 2:6061747/1‑93 (MQ=255)
cGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGcacaca > 2:3420071/1‑93 (MQ=255)
cGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGcacaca < 1:2170577/93‑1 (MQ=255)
aTCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGc < 1:704800/93‑1 (MQ=255)
aTCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGc > 2:5010431/1‑93 (MQ=255)
tCTGGGCGGGAATTAGAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGcc < 1:2600931/93‑1 (MQ=255)
tCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGcc > 1:5369209/1‑93 (MQ=255)
tCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGcc < 2:20924/93‑1 (MQ=255)
tCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGcc > 2:6424497/1‑93 (MQ=255)
cTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCa < 2:6029982/93‑1 (MQ=255)
gCGGTAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCTTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAg < 2:3969793/93‑1 (MQ=255)
cGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGt > 2:3203698/1‑93 (MQ=255)
cGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGt < 1:5097310/93‑1 (MQ=255)
cGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGt < 2:3352038/93‑1 (MQ=255)
gggAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGtt < 2:4018329/93‑1 (MQ=255)
gggAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGtt > 1:4538542/1‑93 (MQ=255)
gggAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGtt > 1:4226468/1‑93 (MQ=255)
ggAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTa > 1:5810499/1‑93 (MQ=255)
aaTTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACt < 2:2718396/93‑1 (MQ=255)
aaTTAAAGCAACCGAAGCAGCGGTTAGCGTTGAATAAAGCCTGGCACCGTACATGCCGGATCAGATCCACTACGCGCACAGCCAGGAGTTACt < 2:6466541/93‑1 (MQ=255)
aTTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTg > 1:5645125/1‑93 (MQ=255)
aTTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTg < 1:3260625/93‑1 (MQ=255)
aTTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGGTACTg > 2:2552792/1‑93 (MQ=255)
ttAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGt < 2:452455/93‑1 (MQ=255)
gCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGt < 2:4672246/93‑1 (MQ=255)
aaCCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTa > 2:621937/1‑93 (MQ=255)
aaCCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTa > 2:5874990/1‑93 (MQ=255)
ccGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATc > 1:4952283/1‑93 (MQ=255)
ccGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATc < 2:3902743/93‑1 (MQ=255)
aGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGa < 1:3709830/93‑1 (MQ=255)
tGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCt > 1:2938798/1‑93 (MQ=255)
gCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCtt < 1:4749627/93‑1 (MQ=255)
cGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTg < 2:1905332/93‑1 (MQ=255)
cGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTg < 2:3699690/93‑1 (MQ=255)
ggTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACGTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGa > 2:6381665/1‑93 (MQ=255)
ttAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATg < 1:4718407/93‑1 (MQ=255)
aGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGcc < 2:5590803/93‑1 (MQ=255)
aGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGcc < 1:4069060/93‑1 (MQ=255)
gCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCa > 1:6454496/1‑93 (MQ=255)
gAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCaaa < 2:1463923/93‑1 (MQ=255)
gAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCaaa > 2:1815947/1‑93 (MQ=255)
gAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCaaa > 1:6026831/1‑93 (MQ=255)
aaGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAg > 1:5723832/1‑93 (MQ=255)
aaGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAg > 1:4176482/1‑93 (MQ=255)
aaGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAg < 2:5647789/93‑1 (MQ=255)
agagTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAgg < 1:2396660/93‑1 (MQ=255)
agagTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAgg < 1:2733136/93‑1 (MQ=255)
gagTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGTACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAACggg > 2:2962083/1‑93 (MQ=255)
gagTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAggg < 1:3444201/93‑1 (MQ=255)
gagTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAggg > 2:1154984/1‑93 (MQ=255)
gTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCg > 1:3127173/1‑93 (MQ=255)
tGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGa < 1:1974074/93‑1 (MQ=255)
ggNCTGNNACCGTTCCTGCCGNNTCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAg < 1:6259919/93‑1 (MQ=255)
ggCCTGGCACCGTGCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAg < 1:76130/93‑1 (MQ=255)
gCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGc < 2:6309072/93‑1 (MQ=255)
gCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGc < 2:46899/93‑1 (MQ=255)
gCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGc < 1:3341576/93‑1 (MQ=255)
ccTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCg < 1:1589612/93‑1 (MQ=255)
ccTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCg < 2:2266724/93‑1 (MQ=255)
cTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCgg < 2:3122259/93‑1 (MQ=255)
cTGGAACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGGCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCgg < 1:3770455/93‑1 (MQ=255)
ggCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGc > 2:1124806/1‑93 (MQ=255)
aCCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGAt < 2:581045/93‑1 (MQ=255)
ccGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATa < 1:5862158/93‑1 (MQ=255)
cGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAg < 1:1274563/93‑1 (MQ=255)
gTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGc > 2:1250742/1‑93 (MQ=255)
gTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGc < 2:2037365/93‑1 (MQ=255)
gTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGc < 1:592163/93‑1 (MQ=255)
gTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGc > 1:2237684/1‑93 (MQ=255)
ttCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCg > 2:728496/1‑93 (MQ=255)
ttCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCg > 1:2791440/1‑93 (MQ=255)
ttCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGACCTTGATGCCAAAGGGCGGGAGGGGGCGTTAggg > 2:1328311/1‑91 (MQ=255)
tCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGa > 1:6245327/1‑93 (MQ=255)
cTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGaaa < 2:4912419/93‑1 (MQ=255)
cTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGaaa < 2:1289314/93‑1 (MQ=255)
cTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGaaa < 1:2695346/93‑1 (MQ=255)
tGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAg > 1:3382083/1‑93 (MQ=255)
gCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGa < 1:2522593/93‑1 (MQ=255)
gCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGa < 2:3251541/93‑1 (MQ=255)
gCCGCATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTATCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGa < 1:5127101/93‑1 (MQ=255)
cGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATc < 1:5271522/93‑1 (MQ=255)
ggATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCt < 2:6264076/93‑1 (MQ=255)
ggATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCt < 2:6440813/93‑1 (MQ=255)
ggATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCt > 1:5104537/1‑93 (MQ=255)
gATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCtt > 2:1699036/1‑93 (MQ=255)
tCAGATCCACTTCGTACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTgg > 1:5758292/1‑93 (MQ=255)
tCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTgg > 2:2496587/1‑93 (MQ=255)
tCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTgg > 1:6066237/1‑93 (MQ=255)
cAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTTGGCGGGCGATAGGGAAAGATCTTggg > 2:2135924/1‑92 (MQ=255)
cAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGgc > 2:5092900/1‑93 (MQ=255)
aGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGgcg < 1:1439099/93‑1 (MQ=255)
gATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGgcgc > 2:4445068/1‑93 (MQ=255)
gATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGgcgc > 2:1605687/1‑93 (MQ=255)
gATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGgcgc > 1:1031641/1‑93 (MQ=255)
ccACTTCGTACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGt < 1:3502040/93‑1 (MQ=255)
ccACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGt > 1:3632962/1‑93 (MQ=255)
cACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTa < 1:4370354/93‑1 (MQ=255)
ttCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTATTc > 1:1214492/1‑93 (MQ=255)
|
GGCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGTACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTATTCCTT > NC_000913/3925196‑3925376
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAGAGGCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGTACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTATTCCTTGT > NC_000913/3925192‑3925378
|
TAGAGGCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGC < SRR4302537.5421890/94‑1 (MQ=60)
AGAGGCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCA > SRR4302537.2560626/1‑94 (MQ=60)
AGAGGCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCA < SRR4302537.2511444/94‑1 (MQ=60)
GAGGCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCAC < SRR4302537.1008920/94‑1 (MQ=60)
GAGGCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCAC < SRR4302537.5311240/94‑1 (MQ=60)
CGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAG < SRR4302537.2185873/94‑1 (MQ=60)
ATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCC < SRR4302537.709621/94‑1 (MQ=60)
ATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCC > SRR4302537.3840582/1‑94 (MQ=60)
ATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCC > SRR4302537.5405943/1‑94 (MQ=60)
TCTGGGCGGGAATTAGAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCA < SRR4302537.2619118/94‑1 (MQ=60)
CGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTT > SRR4302537.4569961/1‑94 (MQ=60)
CGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTT > SRR4302537.4255903/1‑94 (MQ=60)
CGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTT < SRR4302537.4653901/94‑1 (MQ=60)
CGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTT < SRR4302537.5132411/94‑1 (MQ=60)
GGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGTACACAGCCAGGAGTTA > SRR4302537.651149/1‑94 (MQ=60)
GGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTA > SRR4302537.1183004/1‑94 (MQ=60)
GGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTA > SRR4302537.5850335/1‑94 (MQ=60)
GAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACT < SRR4302537.5778034/94‑1 (MQ=60)
GAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGGTACT > SRR4302537.6291977/1‑94 (MQ=60)
AATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTG > SRR4302537.5683762/1‑94 (MQ=60)
ATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGT < SRR4302537.5133744/94‑1 (MQ=60)
ATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGT < SRR4302537.3283621/94‑1 (MQ=60)
TTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTC > SRR4302537.6090554/1‑94 (MQ=60)
TAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCT < SRR4302537.3163780/94‑1 (MQ=60)
AAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCG < SRR4302537.5831534/94‑1 (MQ=60)
AGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGT > SRR4302537.6046351/1‑94 (MQ=60)
ACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATC < SRR4302537.3374861/94‑1 (MQ=60)
ACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATC > SRR4302537.25544/1‑94 (MQ=60)
ACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATC > SRR4302537.4986437/1‑94 (MQ=60)
ACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATC < SRR4302537.5762247/94‑1 (MQ=60)
CGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCG > SRR4302537.1467570/1‑94 (MQ=60)
AAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGA < SRR4302537.2648315/94‑1 (MQ=60)
AGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGAT > SRR4302537.2474134/1‑94 (MQ=60)
AGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGAT < SRR4302537.3735910/94‑1 (MQ=60)
CTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCT < SRR4302537.2112467/94‑1 (MQ=60)
CTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCT > SRR4302537.2959429/1‑94 (MQ=60)
TGCGGTTAGCGAAGAGTTTGGCCTGGTACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTT > SRR4302537.3722071/1‑94 (MQ=60)
GCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTG < SRR4302537.4782436/94‑1 (MQ=60)
CGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGA < SRR4302537.2021377/94‑1 (MQ=60)
GGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGAT < SRR4302537.6324894/94‑1 (MQ=60)
GTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATG < SRR4302537.3692232/94‑1 (MQ=60)
TTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGC < SRR4302537.4751032/94‑1 (MQ=60)
TTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGC < SRR4302537.2247799/94‑1 (MQ=60)
TTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGC < SRR4302537.4197828/94‑1 (MQ=60)
AGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCA < SRR4302537.4097483/94‑1 (MQ=60)
AGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCA > SRR4302537.6498251/1‑94 (MQ=60)
AGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCA > SRR4302537.126645/1‑94 (MQ=60)
CGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAA > SRR4302537.6068243/1‑94 (MQ=60)
GAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAG > SRR4302537.4205638/1‑94 (MQ=60)
GAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAG > SRR4302537.5763014/1‑94 (MQ=60)
AAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGCGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGG > SRR4302537.2779909/1‑94 (MQ=60)
AGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGG < SRR4302537.2752213/94‑1 (MQ=60)
AGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGG < SRR4302537.2413534/94‑1 (MQ=60)
AGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGG < SRR4302537.6185354/94‑1 (MQ=60)
AGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGACAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAACGGG > SRR4302537.376655/1‑94 (MQ=60)
GAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGC < SRR4302537.3468567/94‑1 (MQ=60)
AGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCG > SRR4302537.4758498/1‑94 (MQ=60)
AGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCG > SRR4302537.3149091/1‑94 (MQ=60)
TTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGA > SRR4302537.5122347/1‑94 (MQ=60)
TGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAG < SRR4302537.1987796/94‑1 (MQ=60)
TGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAG < SRR4302537.3459941/94‑1 (MQ=60)
GGNCTGNNACCGTTCCTGCCGNNTCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGC < SRR4302537.6302901/94‑1 (MQ=60)
GGCCTGGCACCGTGCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGC < SRR4302537.76691/94‑1 (MQ=60)
GCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCG < SRR4302537.3365232/94‑1 (MQ=60)
CCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGG < SRR4302537.5904241/94‑1 (MQ=60)
CCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGG < SRR4302537.1600725/94‑1 (MQ=60)
CTGGCACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGG > SRR4302537.2391866/1‑94 (MQ=60)
CTGGAACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGGCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGG < SRR4302537.3796924/94‑1 (MQ=60)
CACCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGAT > SRR4302537.5863002/1‑94 (MQ=60)
CCGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAG < SRR4302537.5902357/94‑1 (MQ=60)
CGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGC > SRR4302537.3013432/1‑94 (MQ=60)
CGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGC > SRR4302537.2253464/1‑94 (MQ=60)
CGTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGC < SRR4302537.1283425/94‑1 (MQ=60)
GTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCG < SRR4302537.596213/94‑1 (MQ=60)
GTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCG > SRR4302537.5600755/1‑94 (MQ=60)
GTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCG > SRR4302537.2810951/1‑94 (MQ=60)
GTTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCG > SRR4302537.2714202/1‑94 (MQ=60)
TTCCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGA > SRR4302537.6288243/1‑94 (MQ=60)
CCTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAA > SRR4302537.4235630/1‑94 (MQ=60)
CTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGTGAAAG > SRR4302537.6036961/1‑94 (MQ=60)
CTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAG < SRR4302537.2714179/94‑1 (MQ=60)
CTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAG < SRR4302537.733469/94‑1 (MQ=60)
CTGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAG > SRR4302537.3406043/1‑94 (MQ=60)
TGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCTAAGGGCGTGAGCGGGCGACAGCGCAAGA > SRR4302537.5580124/1‑94 (MQ=60)
TGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGA < SRR4302537.317553/94‑1 (MQ=60)
TGCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGA < SRR4302537.6521520/94‑1 (MQ=60)
GCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGAT < SRR4302537.5160370/94‑1 (MQ=60)
GCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGAT > SRR4302537.1887260/1‑94 (MQ=60)
GCCGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGAT < SRR4302537.2540304/94‑1 (MQ=60)
GCCGCATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTATCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGAT < SRR4302537.5162434/94‑1 (MQ=60)
CGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCTAAAGATCT < SRR4302537.428457/94‑1 (MQ=60)
CGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCT > SRR4302537.3508105/1‑94 (MQ=60)
CGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCT < SRR4302537.5307804/94‑1 (MQ=60)
CGGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCT > SRR4302537.5139718/1‑94 (MQ=60)
GGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTT < SRR4302537.1361274/94‑1 (MQ=60)
GGATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTT < SRR4302537.5003403/94‑1 (MQ=60)
GATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTG > SRR4302537.2947795/1‑94 (MQ=60)
ATCAGATCCACTTCGTACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGG > SRR4302537.5797735/1‑94 (MQ=60)
ATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGG > SRR4302537.6107909/1‑94 (MQ=60)
ATCAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGG < SRR4302537.3626265/94‑1 (MQ=60)
CAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCG > SRR4302537.5330172/1‑94 (MQ=60)
CAGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCG < SRR4302537.4549618/94‑1 (MQ=60)
AGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGC < SRR4302537.1449130/94‑1 (MQ=60)
AGATCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGC > SRR4302537.1038749/1‑94 (MQ=60)
TCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGT > SRR4302537.3658559/1‑94 (MQ=60)
TCCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGT > SRR4302537.4317539/1‑94 (MQ=60)
CCACTTCGTACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTA < SRR4302537.3526816/94‑1 (MQ=60)
CCACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTA > SRR4302537.2621117/1‑94 (MQ=60)
CACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTAT < SRR4302537.5225251/94‑1 (MQ=60)
CACTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTAT < SRR4302537.4400556/94‑1 (MQ=60)
CTTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTATTC > SRR4302537.1222942/1‑94 (MQ=60)
TTCGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTATTCC < SRR4302537.4814521/94‑1 (MQ=60)
CGCACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTATTCCTT < SRR4302537.1568539/94‑1 (MQ=60)
GTACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTATTCCTTG < SRR4302537.3297871/94‑1 (MQ=60)
CACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTATTCCTTGT > SRR4302537.1473577/1‑94 (MQ=60)
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TAGAGGCGATCTGGGCGGGAATTAAAGCAACCGAAGCTGCGGTTAGCGAAGAGTTTGGCCTGGCACCGTTCCTGCCGGATCAGATCCACTTCGTACACAGCCAGGAGTTACTGTCTCGTTATCCGGATCTTGATGCCAAAGGGCGTGAGCGGGCGATAGCGAAAGATCTTGGCGCGGTATTCCTTGT > NC_000913/3925192‑3925378
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
