Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,926,344	G→A	H240H (CAC→CAT)	yieM ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,926,344	0	G	A	100.0%	921.1 / NA	260	H240H (CAC→CAT)	yieM	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (141/119); total (141/119)

Only 100 of 271 total aligned reads displayed.

ACACAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCGTGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGG  >  NC_000913/3926255‑3926433

acacaGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGc                                                                                        <  2:2744994/93‑1 (MQ=255)

acacaGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGc                                                                                        <  2:4801949/93‑1 (MQ=255)

   caGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAgg                                                                                     <  1:4050704/93‑1 (MQ=255)

    aGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGc                                                                                    <  1:4694809/93‑1 (MQ=255)

      aCAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGa                                                                                  >  2:5985133/1‑93 (MQ=255)

      aCAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGa                                                                                  >  1:1964879/1‑93 (MQ=255)

         aTAACCGGCCCGCCCGTCTGTTCATCATAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAg                                                                               <  2:4665716/93‑1 (MQ=255)

            aaCGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCCCGCCACGACTCACCATGCAGGCGATCGGTg                                                                            >  1:1782059/1‑93 (MQ=255)

             aCGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGa                                                                           >  1:6162948/1‑93 (MQ=255)

             aCGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGa                                                                           <  2:1799803/93‑1 (MQ=255)

              cGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAg                                                                          <  2:6263888/93‑1 (MQ=255)

                gCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCa                                                                        >  1:5741554/1‑93 (MQ=255)

                  ccGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAAc                                                                      <  1:5382266/93‑1 (MQ=255)

                  ccGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAAc                                                                      <  2:5074946/93‑1 (MQ=255)

                   cgcgcgGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACt                                                                     >  1:3705155/1‑93 (MQ=255)

                     cgcgGCTTTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGt                                                                   <  2:5583965/93‑1 (MQ=255)

                     cgcgGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGt                                                                   <  1:5269989/93‑1 (MQ=255)

                       cgGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGttt                                                                 <  1:3214874/93‑1 (MQ=255)

                       cgGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGttt                                                                 >  2:3693030/1‑93 (MQ=255)

                         gCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGttttt                                                               >  2:4352345/1‑93 (MQ=255)

                         gCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGttttt                                                               <  2:2031327/93‑1 (MQ=255)

                         gCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGttttt                                                               >  1:5959855/1‑93 (MQ=255)

                         gCTGTTCATCGTAATCTTTAGGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGttttt                                                               <  1:742441/93‑1 (MQ=255)

                          gtGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTc                                                              <  1:984983/92‑1 (MQ=255)

                          cTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTc                                                              >  1:1138839/1‑93 (MQ=255)

                          cTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTc                                                              >  2:5351676/1‑93 (MQ=255)

                           tGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTcc                                                             >  2:1862296/1‑93 (MQ=255)

                           tGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTcc                                                             <  1:3728936/93‑1 (MQ=255)

                            gTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTcca                                                            >  1:2682447/1‑93 (MQ=255)

                            gTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTcca                                                            >  2:5226009/1‑93 (MQ=255)

                            gTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTcca                                                            >  1:6266862/1‑93 (MQ=255)

                            gTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTcca                                                            >  1:1045433/1‑93 (MQ=255)

                             ttCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTccac                                                           <  1:3808485/93‑1 (MQ=255)

                              tCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTccacc                                                          <  1:4341437/93‑1 (MQ=255)

                              tCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTccacc                                                          >  1:1376562/1‑93 (MQ=255)

                              tCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTccacc                                                          >  1:1589704/1‑93 (MQ=255)

                               cATCGTAATCTTTATGTACCGCCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTccacca                                                         <  2:4392085/93‑1 (MQ=255)

                               cATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTccacca                                                         <  1:4143188/93‑1 (MQ=255)

                                aTCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAg                                                        >  1:5257783/1‑93 (MQ=255)

                                aTCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAg                                                        >  2:2138597/1‑93 (MQ=255)

                                aTCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAg                                                        >  1:4075952/1‑93 (MQ=255)

                                 tCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGc                                                       >  2:2333491/1‑93 (MQ=255)

                                 tCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGc                                                       >  2:3443198/1‑93 (MQ=255)

                                 ccGTAATCCTTATGTACCCCCGGACGTCCGATCTCTTTTTCACGCCACGACTCACCAGGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGc                                                       <  2:4076864/92‑1 (MQ=255)

                                   gTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCg                                                     >  1:3035300/1‑93 (MQ=255)

                                   gTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGACACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCg                                                     <  2:1563696/93‑1 (MQ=255)

                                    tAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGa                                                    >  1:1094654/1‑93 (MQ=255)

                                     aaTCTTTATGTACCACGGGACGTTCGACCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGAc                                                   <  1:227152/93‑1 (MQ=255)

                                     aaTCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGAc                                                   <  2:4176238/93‑1 (MQ=255)

                                     aaTCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGAc                                                   <  1:3293090/93‑1 (MQ=255)

                                     aaTCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGAc                                                   >  2:1095701/1‑93 (MQ=255)

                                     aaTCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGAc                                                   >  2:6077653/1‑93 (MQ=255)

                                     aaTCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGAc                                                   <  1:2391992/93‑1 (MQ=255)

                                     aaTCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGCGAGCAACTGTTTTTCCACCAGCCGAc                                                   >  2:1778542/1‑93 (MQ=255)

                                      aTCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACg                                                  <  2:3374197/93‑1 (MQ=255)

                                        cTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGt                                                <  2:578965/93‑1 (MQ=255)

                                         tttATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTa                                               >  1:1343407/1‑93 (MQ=255)

                                           tATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTaaa                                             >  2:167957/1‑93 (MQ=255)

                                           tATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTaaa                                             >  2:2285370/1‑93 (MQ=255)

                                            aTGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTaaaa                                            <  1:4847205/93‑1 (MQ=255)

                                             tGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAAc                                           >  2:4521811/1‑93 (MQ=255)

                                              gTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACt                                          <  2:3129638/93‑1 (MQ=255)

                                                 ccaccGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGGGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCAt                                       >  1:584351/1‑93 (MQ=255)

                                                    ccGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACt                                    <  1:3489758/93‑1 (MQ=255)

                                                    ccGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCAATAGGTGAGCAACTGTTTTTCCACCAGACGCCGGTAACACTCATACt                                    >  2:5520422/1‑93 (MQ=255)

                                                      ggACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTcc                                  >  1:2140735/1‑93 (MQ=255)

                                                       gACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCa                                 >  1:1481965/1‑93 (MQ=255)

                                                        aCGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAg                                <  1:5636571/93‑1 (MQ=255)

                                                         cGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGt                               <  2:6349716/93‑1 (MQ=255)

                                                          gTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGtt                              >  2:3300184/1‑93 (MQ=255)

                                                           ttCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTc                             >  2:5709889/1‑93 (MQ=255)

                                                           ttCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTc                             >  2:3458159/1‑93 (MQ=255)

                                                              gATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGt                          >  1:2774217/1‑93 (MQ=255)

                                                               aTCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGtt                         >  2:2654157/1‑93 (MQ=255)

                                                                tCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTa                        >  1:5128546/1‑93 (MQ=255)

                                                                 cACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTAt                       >  1:4480951/1‑93 (MQ=255)

                                                                   cTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATcc                     <  1:5495234/93‑1 (MQ=255)

                                                                   cTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATcc                     <  2:4046108/93‑1 (MQ=255)

                                                                    tttttCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATccc                    >  1:2930806/1‑93 (MQ=255)

                                                                    tttttCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATccc                    >  1:3098332/1‑93 (MQ=255)

                                                                      tttCACGCCACGCCTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCGCCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTa                  <  2:335453/93‑1 (MQ=255)

                                                                      tttCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTa                  <  1:5616291/93‑1 (MQ=255)

                                                                       ttCACGCCACGACTCTCCATGCAGGCAATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAg                 <  1:4925317/93‑1 (MQ=255)

                                                                       ttCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTGTCCACCAGCCGACGGGAAAACTCATACGCCAGTTCCGTTATCCCTAg                 >  1:6470226/1‑93 (MQ=255)

                                                                        tCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAgt                <  2:2464772/93‑1 (MQ=255)

                                                                          aCGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAgtgt              <  1:2817421/93‑1 (MQ=255)

                                                                           cGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTc             <  2:1205286/93‑1 (MQ=255)

                                                                            gCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCg            <  2:2381592/93‑1 (MQ=255)

                                                                             ccACGACTCACCATGCAGGCTATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGc           <  2:4855978/93‑1 (MQ=255)

                                                                               aCGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCa         >  2:3068068/1‑93 (MQ=255)

                                                                               aCGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCa         >  2:1415852/1‑93 (MQ=255)

                                                                               aCGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCa         <  1:665832/93‑1 (MQ=255)

                                                                                cGACTCACCATGCAGGCGATAGGTGAGCAGCTGTTTTTCCACCAGCCGACGGTAAATCTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAg        <  1:2731086/93‑1 (MQ=255)

                                                                                 gACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGt       >  2:1981481/1‑93 (MQ=255)

                                                                                  aCTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGtt      <  2:728888/93‑1 (MQ=255)

                                                                                     cACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTg   <  1:4217703/93‑1 (MQ=255)

                                                                                     cACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTg   >  2:2551295/1‑93 (MQ=255)

                                                                                      aCCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTgg  <  2:3852940/93‑1 (MQ=255)

                                                                                      aCCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTgg  >  1:1624529/1‑93 (MQ=255)

                                                                                      aCCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTgg  >  1:4760015/1‑93 (MQ=255)

ACACAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCGTGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGG  >  NC_000913/3926255‑3926433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCACACAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCGTGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGC  >  NC_000913/3926253‑3926437

CCACACAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATG                                                                                             <  SRR4302537.2360954/94‑1 (MQ=60)

CCACACAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATG                                                                                             <  SRR4302537.5060706/94‑1 (MQ=60)

  ACACAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCA                                                                                           <  SRR4302537.3096287/94‑1 (MQ=60)

   CACAGACAATAAACGGCCCGCGCTGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAG                                                                                          <  SRR4302537.2917237/94‑1 (MQ=60)

    ACAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGG                                                                                         <  SRR4302537.886321/94‑1 (MQ=60)

    ACAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGG                                                                                         <  SRR4302537.3741316/94‑1 (MQ=60)

    ACAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGG                                                                                         >  SRR4302537.3902757/1‑94 (MQ=60)

     CAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGC                                                                                        >  SRR4302537.2326558/1‑94 (MQ=60)

     CAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGC                                                                                        >  SRR4302537.5272923/1‑94 (MQ=60)

     CAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGC                                                                                        <  SRR4302537.4079028/94‑1 (MQ=60)

     CAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTATTTCACGCCACGCCTCACCATGCACGC                                                                                        >  SRR4302537.3537847/1‑94 (MQ=60)

      AGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCG                                                                                       <  SRR4302537.4727284/94‑1 (MQ=60)

       GACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGA                                                                                      >  SRR4302537.1978541/1‑94 (MQ=60)

        ACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGAT                                                                                     <  SRR4302537.3118943/94‑1 (MQ=60)

        ACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGAT                                                                                     <  SRR4302537.4220776/94‑1 (MQ=60)

          AATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCCCTTTTTCACGCCACGACTCACCATGCAGGCGATAG                                                                                   <  SRR4302537.3799481/94‑1 (MQ=60)

          AATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAG                                                                                   <  SRR4302537.1135358/94‑1 (MQ=60)

           ATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGCCTCACCATGCAGGCGATAGG                                                                                  <  SRR4302537.6485058/94‑1 (MQ=60)

            TAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGT                                                                                 <  SRR4302537.446333/94‑1 (MQ=60)

             AAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCCCGCCACGACTCACCATGCAGGCGATCGGTG                                                                                >  SRR4302537.1794478/1‑94 (MQ=60)

             AAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTG                                                                                >  SRR4302537.1459746/1‑94 (MQ=60)

              AACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGA                                                                               >  SRR4302537.6205365/1‑94 (MQ=60)

              AACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGA                                                                               <  SRR4302537.5682628/94‑1 (MQ=60)

                CGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGC                                                                             >  SRR4302537.3225419/1‑94 (MQ=60)

                 GGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGGTAGGTGAGCA                                                                            >  SRR4302537.4353706/1‑94 (MQ=60)

                 GGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCA                                                                            >  SRR4302537.3640851/1‑94 (MQ=60)

                 GGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCA                                                                            >  SRR4302537.5780867/1‑94 (MQ=60)

                    CCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACT                                                                         >  SRR4302537.3731214/1‑94 (MQ=60)

                    CCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACT                                                                         <  SRR4302537.5419071/94‑1 (MQ=60)

                       CGCGGCTGTTCATCGTAATCTTTATGTCCCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTT                                                                      <  SRR4302537.1804044/94‑1 (MQ=60)

                       CGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTT                                                                      >  SRR4302537.177730/1‑94 (MQ=60)

                       CGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTT                                                                      >  SRR4302537.3301926/1‑94 (MQ=60)

                       CGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTT                                                                      <  SRR4302537.5306256/94‑1 (MQ=60)

                       CGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTT                                                                      <  SRR4302537.4874658/94‑1 (MQ=60)

                       CGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTT                                                                      >  SRR4302537.4743649/1‑94 (MQ=60)

                        GCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTT                                                                     <  SRR4302537.1164917/94‑1 (MQ=60)

                         CGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTT                                                                    >  SRR4302537.2263003/1‑94 (MQ=60)

                         CGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTT                                                                    <  SRR4302537.3237498/94‑1 (MQ=60)

                         CGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTT                                                                    <  SRR4302537.1174526/94‑1 (MQ=60)

                          GGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTT                                                                   <  SRR4302537.244331/94‑1 (MQ=60)

                          GGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTT                                                                   >  SRR4302537.6000761/1‑94 (MQ=60)

                           GCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTC                                                                  >  SRR4302537.1146751/1‑94 (MQ=60)

                           GCTGTTCATCGTAATCTTTAGGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTC                                                                  <  SRR4302537.747506/94‑1 (MQ=60)

                            GTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCC                                                                 <  SRR4302537.991785/94‑1 (MQ=60)

                            CTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCC                                                                 >  SRR4302537.2127693/1‑94 (MQ=60)

                             TGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCGGGCGATAGGTGAGCAACTGTTTTTCCA                                                                >  SRR4302537.2772747/1‑94 (MQ=60)

                             TGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCA                                                                <  SRR4302537.3755131/94‑1 (MQ=60)

                             TGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCA                                                                >  SRR4302537.1052649/1‑94 (MQ=60)

                             TGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCA                                                                >  SRR4302537.6309871/1‑94 (MQ=60)

                             TGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCA                                                                >  SRR4302537.2701175/1‑94 (MQ=60)

                             TGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCA                                                                >  SRR4302537.2736897/1‑94 (MQ=60)

                              GTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCAC                                                               >  SRR4302537.435503/1‑94 (MQ=60)

                               TTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACC                                                              <  SRR4302537.3835188/94‑1 (MQ=60)

                               TTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACC                                                              >  SRR4302537.1600819/1‑94 (MQ=60)

                               TTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACC                                                              >  SRR4302537.2574734/1‑94 (MQ=60)

                               TTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACC                                                              >  SRR4302537.1386172/1‑94 (MQ=60)

                                TCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCA                                                             <  SRR4302537.4371554/94‑1 (MQ=60)

                                TCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCA                                                             <  SRR4302537.1366569/94‑1 (MQ=60)

                                 CATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAG                                                            >  SRR4302537.2780795/1‑94 (MQ=60)

                                 CATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAG                                                            <  SRR4302537.4172087/94‑1 (MQ=60)

                                 CATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAG                                                            >  SRR4302537.4104410/1‑94 (MQ=60)

                                 CATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAG                                                            >  SRR4302537.5293966/1‑94 (MQ=60)

                                  ATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGC                                                           >  SRR4302537.1429316/1‑94 (MQ=60)

                                   TCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCC                                                          <  SRR4302537.4381188/94‑1 (MQ=60)

                                    CGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCG                                                         >  SRR4302537.3056459/1‑94 (MQ=60)

                                    CGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCG                                                         <  SRR4302537.652671/94‑1 (MQ=60)

                                    CGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCG                                                         >  SRR4302537.3682973/1‑94 (MQ=60)

                                     GTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGA                                                        >  SRR4302537.1102215/1‑94 (MQ=60)

                                      TAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGAC                                                       >  SRR4302537.946573/1‑94 (MQ=60)

                                      TAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGAC                                                       <  SRR4302537.2879033/94‑1 (MQ=60)

                                       AATCTTTATGTACCACGGGACGTTCGACCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACG                                                      <  SRR4302537.228762/94‑1 (MQ=60)

                                       AATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACG                                                      <  SRR4302537.2408842/94‑1 (MQ=60)

                                       AATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACG                                                      <  SRR4302537.3316362/94‑1 (MQ=60)

                                        ATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGG                                                     <  SRR4302537.4918423/94‑1 (MQ=60)

                                         TCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGT                                                    <  SRR4302537.1969104/94‑1 (MQ=60)

                                          CTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTA                                                   >  SRR4302537.1352765/1‑94 (MQ=60)

                                            TTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAA                                                 <  SRR4302537.3025458/94‑1 (MQ=60)

                                             TATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAA                                                >  SRR4302537.3186560/1‑94 (MQ=60)

                                              ATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAAC                                               <  SRR4302537.4880654/94‑1 (MQ=60)

                                              ATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAAC                                               >  SRR4302537.6067345/1‑94 (MQ=60)

                                               TGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACT                                              >  SRR4302537.699882/1‑94 (MQ=60)

                                                GTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTC                                             >  SRR4302537.475328/1‑94 (MQ=60)

                                                 TACCCCCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCA                                            <  SRR4302537.3398416/94‑1 (MQ=60)

                                                  ACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGGGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCAT                                           >  SRR4302537.588341/1‑94 (MQ=60)

                                                  ACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCAT                                           >  SRR4302537.374548/1‑94 (MQ=60)

                                                    CACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATAC                                         <  SRR4302537.2408121/94‑1 (MQ=60)

                                                     CCCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACT                                        <  SRR4302537.4995270/94‑1 (MQ=60)

                                                      CCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTC                                       >  SRR4302537.3419564/1‑94 (MQ=60)

                                                      CCGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTC                                       <  SRR4302537.3514442/94‑1 (MQ=60)

                                                       CGGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCC                                      >  SRR4302537.2155804/1‑94 (MQ=60)

                                                        GGACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCA                                     >  SRR4302537.1492274/1‑94 (MQ=60)

                                                          ACGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGT                                   <  SRR4302537.5675145/94‑1 (MQ=60)

                                                           CGTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTT                                  >  SRR4302537.5356445/1‑94 (MQ=60)

                                                           CGTTCGATCACTTTCTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTT                                  <  SRR4302537.1606860/94‑1 (MQ=60)

                                                            GTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTC                                 >  SRR4302537.4091354/1‑94 (MQ=60)

                                                            GTTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTC                                 >  SRR4302537.5858325/1‑94 (MQ=60)

                                                            GTTCGATCACTTCTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCCCCAGCCGACGGTAAAACTCATACTCCAGTTC                                 <  SRR4302537.2796340/94‑1 (MQ=60)

                                                             TTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAACACTCATACTCCAGTTCC                                >  SRR4302537.6014190/1‑94 (MQ=60)

                                                             TTCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCC                                <  SRR4302537.673600/94‑1 (MQ=60)

                                                              TCGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCG                               >  SRR4302537.5194633/1‑94 (MQ=60)

                                                               CGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGT                              >  SRR4302537.2001248/1‑94 (MQ=60)

                                                               CGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGT                              >  SRR4302537.4042622/1‑94 (MQ=60)

                                                               CGATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGT                              >  SRR4302537.2793610/1‑94 (MQ=60)

                                                               CGATCACTTTTTCAAGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGT                              >  SRR4302537.5877812/1‑94 (MQ=60)

                                                                GATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAGCTCTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTT                             <  SRR4302537.680070/94‑1 (MQ=60)

                                                                GATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTT                             <  SRR4302537.2836771/94‑1 (MQ=60)

                                                                 ATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTA                            >  SRR4302537.5163888/1‑94 (MQ=60)

                                                                 ATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTA                            <  SRR4302537.459080/94‑1 (MQ=60)

                                                                 ATCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTA                            <  SRR4302537.4197697/94‑1 (MQ=60)

                                                                  TCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTAT                           >  SRR4302537.4511949/1‑94 (MQ=60)

                                                                  TCACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTAT                           >  SRR4302537.1075988/1‑94 (MQ=60)

                                                                   CACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATC                          <  SRR4302537.416431/94‑1 (MQ=60)

                                                                    ACTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCC                         >  SRR4302537.5659119/1‑94 (MQ=60)

                                                                     CTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCC                        >  SRR4302537.2951387/1‑94 (MQ=60)

                                                                     CTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCC                        >  SRR4302537.3119957/1‑94 (MQ=60)

                                                                     CTTTTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCC                        <  SRR4302537.5532749/94‑1 (MQ=60)

                                                                        TTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAG                     <  SRR4302537.5654693/94‑1 (MQ=60)

                                                                        TTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAG                     <  SRR4302537.156490/94‑1 (MQ=60)

                                                                        TTTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTGTCCACCAGCCGACGGGAAAACTCATACGCCAGTTCCGTTATCCCTAG                     >  SRR4302537.6514091/1‑94 (MQ=60)

                                                                         TTCACGCCACGACTCTCCATGCAGGCAATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGT                    <  SRR4302537.4959274/94‑1 (MQ=60)

                                                                         TTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGT                    >  SRR4302537.6299471/1‑94 (MQ=60)

                                                                         TTCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGT                    >  SRR4302537.1563831/1‑94 (MQ=60)

                                                                         TTCACGCCACGACTCACAATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGCCGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGT                    <  SRR4302537.5642623/94‑1 (MQ=60)

                                                                          TCACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTG                   <  SRR4302537.549888/94‑1 (MQ=60)

                                                                           CACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGT                  >  SRR4302537.5676610/1‑94 (MQ=60)

                                                                            ACGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTC                 <  SRR4302537.2837121/94‑1 (MQ=60)

                                                                             CGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCG                <  SRR4302537.5969670/94‑1 (MQ=60)

                                                                             CGCCACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCG                >  SRR4302537.6355390/1‑94 (MQ=60)

                                                                                CACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCA             >  SRR4302537.5479826/1‑94 (MQ=60)

                                                                                 ACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAG            <  SRR4302537.1110251/94‑1 (MQ=60)

                                                                                 ACGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAG            <  SRR4302537.670371/94‑1 (MQ=60)

                                                                                  CGACTCACCATGCAGGCGATAGGTGAGCAGCTGTTTTTCCACCAGCCGACGGTAAATCTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGT           <  SRR4302537.2750151/94‑1 (MQ=60)

                                                                                  CGACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGT           <  SRR4302537.55392/94‑1 (MQ=60)

                                                                                   GACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTT          >  SRR4302537.5321046/1‑94 (MQ=60)

                                                                                   GACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTT          >  SRR4302537.498138/1‑94 (MQ=60)

                                                                                   GACTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTT          >  SRR4302537.4823090/1‑94 (MQ=60)

                                                                                     CTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCT        <  SRR4302537.5299723/94‑1 (MQ=60)

                                                                                     CTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCT        <  SRR4302537.4100877/94‑1 (MQ=60)

                                                                                     CTCACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCT        <  SRR4302537.171669/94‑1 (MQ=60)

                                                                                      CCACCATGCAGGCGATAGGTGAGCAACTGTTTTCCCGCCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTG       <  SRR4302537.6224005/94‑1 (MQ=60)

                                                                                       CACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGG      >  SRR4302537.4792890/1‑94 (MQ=60)

                                                                                       CACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGG      <  SRR4302537.4247103/94‑1 (MQ=60)

                                                                                       CACCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGG      >  SRR4302537.1635894/1‑94 (MQ=60)

                                                                                         CCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCG    >  SRR4302537.1781760/1‑94 (MQ=60)

                                                                                         CCATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCG    <  SRR4302537.6099417/94‑1 (MQ=60)

                                                                                          CATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGG   <  SRR4302537.442185/94‑1 (MQ=60)

                                                                                           ATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGC  <  SRR4302537.4368908/94‑1 (MQ=60)

                                                                                           ATGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGC  >  SRR4302537.1213772/1‑94 (MQ=60)

CCACACAGACAATAAACGGCCCGCGCGGCTGTTCATCGTAATCTTTATGTACCACCGGACGTTCGATCACTTTTTCACGCCACGACTCACCGTGCAGGCGATAGGTGAGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGC  >  NC_000913/3926253‑3926437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`