Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,945,079 |
A→G |
S171S (AGT→AGC) |
yifDA ← |
transcription regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,945,079 | 0 | A | G | 99.6%
| 970.7
/ NA
| 282 | S171S (AGT→AGC) | yifDA | transcription regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (141/139); minor base C (0/1); total (141/141) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 292 total aligned reads displayed.
AGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCACTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAAG > NC_000913/3944989‑3945168
|
aGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCt > 2:712385/1‑93 (MQ=255)
aGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCt < 1:4065619/93‑1 (MQ=255)
aGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCt > 1:4295426/1‑93 (MQ=255)
gCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTg > 2:1235452/1‑93 (MQ=255)
gCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTg < 2:19072/93‑1 (MQ=255)
gCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTg > 1:5432709/1‑93 (MQ=255)
cACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTgg < 2:2233029/93‑1 (MQ=255)
aCCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGt > 1:1783190/1‑93 (MQ=255)
aCCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGt > 2:4473704/1‑93 (MQ=255)
aCCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGt > 1:6153120/1‑93 (MQ=255)
ccGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGta > 2:605638/1‑93 (MQ=255)
ccGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGta > 2:1561580/1‑93 (MQ=255)
ccGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGta > 2:2088748/1‑93 (MQ=255)
cGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGtat < 2:1735738/93‑1 (MQ=255)
cGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGtat < 2:5580552/93‑1 (MQ=255)
cGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGtat > 2:6297836/1‑93 (MQ=255)
gATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGtata > 2:271248/1‑93 (MQ=255)
tCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATaaa < 1:1195197/93‑1 (MQ=255)
aaCCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAgcg > 2:2577459/1‑93 (MQ=255)
ccTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCt > 1:810786/1‑93 (MQ=255)
cTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTa > 1:5718168/1‑93 (MQ=255)
cTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTa < 2:451529/93‑1 (MQ=255)
cTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTa > 2:2161978/1‑93 (MQ=255)
gCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTaaa < 1:3621501/93‑1 (MQ=255)
gCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTaaa > 2:5212584/1‑93 (MQ=255)
cTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGt > 2:4631033/1‑93 (MQ=255)
tCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTg > 2:5306184/1‑93 (MQ=255)
cATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGa < 2:1097151/93‑1 (MQ=255)
cATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGa < 2:4418043/93‑1 (MQ=255)
aTGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGaa > 1:3805270/1‑93 (MQ=255)
gCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAat < 2:573926/93‑1 (MQ=255)
cTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAata < 2:3890979/93‑1 (MQ=255)
cTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAata > 2:4248268/1‑93 (MQ=255)
cTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAata > 1:4556188/1‑93 (MQ=255)
tGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAatat > 2:1971807/1‑93 (MQ=255)
tGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAatat < 1:2557879/93‑1 (MQ=255)
tGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAatat > 2:829979/1‑93 (MQ=255)
gTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATc < 1:3101626/93‑1 (MQ=255)
ttGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATcc < 2:4742707/93‑1 (MQ=255)
tGAAACTCTGACCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAGGGGGCGCTGGTATAAAGCTCTAAAGTGAAATATccc < 2:6221713/93‑1 (MQ=255)
tGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATccc < 2:2050666/93‑1 (MQ=255)
tGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATccc < 1:2174311/93‑1 (MQ=255)
tGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATccc < 1:56868/93‑1 (MQ=255)
aaaaTCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAg < 2:4001998/93‑1 (MQ=255)
aaTCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCa > 2:5798505/1‑93 (MQ=255)
tCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAAc < 2:1654447/93‑1 (MQ=255)
tCTGCCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAAc < 2:5606302/93‑1 (MQ=255)
tGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTg > 2:5511398/1‑93 (MQ=255)
tGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTg < 2:3688480/93‑1 (MQ=255)
ggCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGa < 2:3655313/93‑1 (MQ=255)
gCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGac > 1:736915/1‑93 (MQ=255)
ccccACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGacta < 2:755192/93‑1 (MQ=255)
ccACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGactact < 2:1338213/93‑1 (MQ=255)
ccACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGactact < 1:4977915/93‑1 (MQ=255)
ccACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGactact > 2:4768427/1‑93 (MQ=255)
ccACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGactact > 1:3246220/1‑93 (MQ=255)
tCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAAt > 2:4898186/1‑93 (MQ=255)
tCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAAt < 2:3210232/93‑1 (MQ=255)
cAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAAtt < 2:5959677/93‑1 (MQ=255)
cAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAAtt > 2:4165408/1‑93 (MQ=255)
cAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAAtt > 2:3392971/1‑93 (MQ=255)
tCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTc < 1:5234142/93‑1 (MQ=255)
tCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTc > 1:210915/1‑93 (MQ=255)
cGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTcc > 1:1984664/1‑93 (MQ=255)
cAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAt > 2:3534332/1‑93 (MQ=255)
cAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAt > 1:5531653/1‑93 (MQ=255)
cAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAt > 2:2287848/1‑93 (MQ=255)
aGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAtt > 2:2510449/1‑93 (MQ=255)
gATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAttt < 2:3472173/93‑1 (MQ=255)
gATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAttt < 1:1533145/93‑1 (MQ=255)
aTAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAtttt < 1:1689255/93‑1 (MQ=255)
aTAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAtttt < 1:6251284/93‑1 (MQ=255)
tAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTg > 1:271155/1‑93 (MQ=255)
aaTTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTgg < 1:3007292/93‑1 (MQ=255)
ttAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGgc < 1:5879839/93‑1 (MQ=255)
aaGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGgcgc < 1:245447/93‑1 (MQ=255)
aGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCt < 2:5086918/93‑1 (MQ=255)
aTCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTc < 2:5998081/93‑1 (MQ=255)
aTCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTc < 1:5052516/93‑1 (MQ=255)
aTCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTc > 2:2953366/1‑93 (MQ=255)
aTCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTc > 1:2664361/1‑93 (MQ=255)
tctcCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCa > 2:3807085/1‑93 (MQ=255)
tctcCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCa > 2:50007/1‑93 (MQ=255)
tcCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGt > 1:4845194/1‑93 (MQ=255)
ccTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTgg > 2:106699/1‑93 (MQ=255)
cTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGt > 2:6161760/1‑93 (MQ=255)
tttAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGta > 1:723040/1‑93 (MQ=255)
tttAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGta > 2:6431632/1‑93 (MQ=255)
tAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGtaat < 2:1477850/93‑1 (MQ=255)
tAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGtaat < 2:666189/93‑1 (MQ=255)
aGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGAGCTTCAGTGGtaata > 1:6423324/1‑93 (MQ=255)
tttGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAATTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATaaga < 2:4140447/93‑1 (MQ=255)
tttGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATaaga < 1:4715083/93‑1 (MQ=255)
tttGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATaaga < 1:1446531/93‑1 (MQ=255)
ttGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATaagaa < 2:3307232/93‑1 (MQ=255)
aaGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGAt > 2:3360507/1‑93 (MQ=255)
aaGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGAt < 1:4979618/93‑1 (MQ=255)
ggggCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCa < 1:3153702/93‑1 (MQ=255)
gggCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCaa < 1:2754426/93‑1 (MQ=255)
gggCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCaa > 1:1266238/1‑93 (MQ=255)
|
AGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCACTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAAG > NC_000913/3944989‑3945168
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTCAGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCACTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAAGCTG > NC_000913/3944986‑3945171
|
GTCAGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCG < SRR4302537.27935/94‑1 (MQ=60)
GTCAGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCG < SRR4302537.5535091/94‑1 (MQ=60)
CAGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCT < SRR4302537.36827/94‑1 (MQ=60)
CAGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCT > SRR4302537.4325288/1‑94 (MQ=60)
AGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTG < SRR4302537.4094027/94‑1 (MQ=60)
AGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTG > SRR4302537.5469761/1‑94 (MQ=60)
GCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGG < SRR4302537.2534662/94‑1 (MQ=60)
CACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGT > SRR4302537.1795625/1‑94 (MQ=60)
CACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGT > SRR4302537.2177589/1‑94 (MQ=60)
CACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGT > SRR4302537.6195448/1‑94 (MQ=60)
CACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCACCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGT < SRR4302537.6085856/94‑1 (MQ=60)
CGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATA > SRR4302537.5424720/1‑94 (MQ=60)
ATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAA > SRR4302537.5482296/1‑94 (MQ=60)
ATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAA > SRR4302537.3105892/1‑94 (MQ=60)
TCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAG < SRR4302537.1508403/94‑1 (MQ=60)
TCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAG < SRR4302537.1203497/94‑1 (MQ=60)
TCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAG < SRR4302537.2102193/94‑1 (MQ=60)
CAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGC < SRR4302537.5581528/94‑1 (MQ=60)
AAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCG < SRR4302537.5214588/94‑1 (MQ=60)
AACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGC > SRR4302537.3355027/1‑94 (MQ=60)
ACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCT < SRR4302537.1512842/94‑1 (MQ=60)
ACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCT > SRR4302537.816343/1‑94 (MQ=60)
ACCTGCCTCATGCTGTTGAAAATCTGGCCACCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGATGGTATAAAGCGCT < SRR4302537.2700574/94‑1 (MQ=60)
CCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTA > SRR4302537.5757304/1‑94 (MQ=60)
GCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAG < SRR4302537.3647022/94‑1 (MQ=60)
GCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAG > SRR4302537.2444189/1‑94 (MQ=60)
GCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAG < SRR4302537.988942/94‑1 (MQ=60)
CCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGT > SRR4302537.4127345/1‑94 (MQ=60)
TCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGA < SRR4302537.1994230/94‑1 (MQ=60)
TCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGA > SRR4302537.480682/1‑94 (MQ=60)
CATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAA > SRR4302537.3831953/1‑94 (MQ=60)
ATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAA < SRR4302537.6207345/94‑1 (MQ=60)
TGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAAT > SRR4302537.667916/1‑94 (MQ=60)
GCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAATTGAAATA < SRR4302537.2819527/94‑1 (MQ=60)
GCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATA > SRR4302537.4587734/1‑94 (MQ=60)
GCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATA < SRR4302537.2719659/94‑1 (MQ=60)
TGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATC < SRR4302537.2575808/94‑1 (MQ=60)
TGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATC < SRR4302537.775449/94‑1 (MQ=60)
GTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATACAGCGCTAAAGTGAAATATCC > SRR4302537.2586613/1‑94 (MQ=60)
GTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCC < SRR4302537.3123277/94‑1 (MQ=60)
TGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCA < SRR4302537.57288/94‑1 (MQ=60)
TGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCA < SRR4302537.2189641/94‑1 (MQ=60)
TGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCA > SRR4302537.3227652/1‑94 (MQ=60)
aaatcctgcccccccctaaagtcgaagtaaattaaaaccCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCA < SRR4302537.665810/55‑1 (MQ=60)
CTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTG > SRR4302537.574929/1‑94 (MQ=60)
CTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTG < SRR4302537.1594908/94‑1 (MQ=60)
CTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTG > SRR4302537.1793426/1‑94 (MQ=60)
GGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGAC > SRR4302537.741940/1‑94 (MQ=60)
GGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGAC > SRR4302537.3387799/1‑94 (MQ=60)
CCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTA < SRR4302537.1228121/94‑1 (MQ=60)
CCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTAC > SRR4302537.1612460/1‑94 (MQ=60)
CCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAGATATCCCAGCAACTCACTAGT > SRR4302537.4651449/1‑94 (MQ=60)
CCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACT > SRR4302537.3269094/1‑94 (MQ=60)
CCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTA < SRR4302537.5012227/94‑1 (MQ=60)
CCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTA > SRR4302537.4880725/1‑94 (MQ=60)
CACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAA > SRR4302537.4842738/1‑94 (MQ=60)
CACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAA < SRR4302537.580777/94‑1 (MQ=60)
CACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAA > SRR4302537.136598/1‑94 (MQ=60)
CACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAA > SRR4302537.4524434/1‑94 (MQ=60)
ACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAA > SRR4302537.1406542/1‑94 (MQ=60)
CAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTC > SRR4302537.6033964/1‑94 (MQ=60)
AAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCG < SRR4302537.5710872/94‑1 (MQ=60)
GTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTC > SRR4302537.212425/1‑94 (MQ=60)
TCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCC > SRR4302537.812314/1‑94 (MQ=60)
TCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCC < SRR4302537.5270150/94‑1 (MQ=60)
TCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCC < SRR4302537.1757654/94‑1 (MQ=60)
TCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCC > SRR4302537.1998456/1‑94 (MQ=60)
CGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCA < SRR4302537.4734680/94‑1 (MQ=60)
CGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCA > SRR4302537.5306496/1‑94 (MQ=60)
GCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAT > SRR4302537.3711762/1‑94 (MQ=60)
GCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAT > SRR4302537.5569414/1‑94 (MQ=60)
GCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCAT > SRR4302537.5477434/1‑94 (MQ=60)
CAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATT > SRR4302537.6287763/1‑94 (MQ=60)
CAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATT > SRR4302537.2765331/1‑94 (MQ=60)
GATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTT > SRR4302537.4053974/1‑94 (MQ=60)
GATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTT < SRR4302537.1543858/94‑1 (MQ=60)
ATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTG < SRR4302537.6294229/94‑1 (MQ=60)
ATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTG > SRR4302537.273063/1‑94 (MQ=60)
ATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTG < SRR4302537.1701081/94‑1 (MQ=60)
TAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGG > SRR4302537.4063474/1‑94 (MQ=60)
TAATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGG > SRR4302537.870288/1‑94 (MQ=60)
AATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGG > SRR4302537.588305/1‑94 (MQ=60)
AATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGG < SRR4302537.3028230/94‑1 (MQ=60)
ATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGC < SRR4302537.2486388/94‑1 (MQ=60)
ATTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGC < SRR4302537.3251918/94‑1 (MQ=60)
TTAAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCG < SRR4302537.5920180/94‑1 (MQ=60)
AAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCT < SRR4302537.5031050/94‑1 (MQ=60)
AAGATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCT < SRR4302537.247188/94‑1 (MQ=60)
AGATCTCCCTTTAGTTTTGAAGGGACCCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTT < SRR4302537.2037494/94‑1 (MQ=60)
GATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTC > SRR4302537.2682972/1‑94 (MQ=60)
ATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCA < SRR4302537.5087301/94‑1 (MQ=60)
ATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCA < SRR4302537.1845352/94‑1 (MQ=60)
ATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCA < SRR4302537.3127824/94‑1 (MQ=60)
ATCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCA < SRR4302537.3773466/94‑1 (MQ=60)
TCTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAG < SRR4302537.3039320/94‑1 (MQ=60)
CTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGT > SRR4302537.3149102/1‑94 (MQ=60)
CTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGT > SRR4302537.6306062/1‑94 (MQ=60)
CTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGT > SRR4302537.6319825/1‑94 (MQ=60)
CTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGT > SRR4302537.4878633/1‑94 (MQ=60)
CTCCCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGT < SRR4302537.2639902/94‑1 (MQ=60)
CCTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGT > SRR4302537.4195792/1‑94 (MQ=60)
CTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTA > SRR4302537.5734020/1‑94 (MQ=60)
CTTTAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTA > SRR4302537.727977/1‑94 (MQ=60)
TAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATA < SRR4302537.4562046/94‑1 (MQ=60)
TAGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGAGCTTCAGTGGTAATA > SRR4302537.6466978/1‑94 (MQ=60)
AGTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAA < SRR4302537.2161393/94‑1 (MQ=60)
GTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAG > SRR4302537.2375299/1‑94 (MQ=60)
GTTTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAG > SRR4302537.735798/1‑94 (MQ=60)
TTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAA < SRR4302537.4747694/94‑1 (MQ=60)
TTTGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAA < SRR4302537.1456610/94‑1 (MQ=60)
TTGAAGGGGCGCTGTTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAG < SRR4302537.2838218/94‑1 (MQ=60)
TGAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGA < SRR4302537.4978512/94‑1 (MQ=60)
GAAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGAT < SRR4302537.717207/94‑1 (MQ=60)
AAGGGTCGCTAGTATAAAGCGCGAAAGTGAAATCTCCCAGTAACTGACTACTAAATTTGTCCATTTTAGGGGCTTCAGTGGTAATAAGAAGATC < SRR4302537.5013779/94‑1 (MQ=60)
AAGGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATC < SRR4302537.5013938/94‑1 (MQ=60)
GGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAA < SRR4302537.3175846/94‑1 (MQ=60)
GGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAA < SRR4302537.5047691/94‑1 (MQ=60)
GGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAA > SRR4302537.1275044/1‑94 (MQ=60)
GGGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAA > SRR4302537.5198478/1‑94 (MQ=60)
GGGCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAAG < SRR4302537.2773657/94‑1 (MQ=60)
GCGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAAGCT < SRR4302537.533101/94‑1 (MQ=60)
CGCTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAAGCTG < SRR4302537.6231963/94‑1 (MQ=60)
|
GTCAGCACCGATCAAACCTGCCTCATGCTGTTGAAAATCTGGCCCCCACTCAAGTCGCAGATAATTAAGATCTCCCTTTAGTTTTGAAGGGGCACTGGTATAAAGCGCTAAAGTGAAATATCCCAGCAACTGACTACTAAATTCGTCCATTTTGGGCGCTTCAGTGGTAATAAGAAGATCAAGCTG > NC_000913/3944986‑3945171
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
